Experiment set4IT005 for Escherichia coli BL21

Compare to:

Mixed culture, Bdellovibrio bacteriovorus HD100_1

200 most important genes:

  gene name fitness t score description  
ECD_00502 -4.5 -1.7 DLP12 prophage; putative antitermination protein compare
ECD_02618 -4.5 -3.1 putative SDR family oxidoreductase compare
ECD_02456 -4.2 -2.7 putative 4Fe-4S cluster-containing protein compare
ECD_00393 -4.1 -2.8 periplasmic folding chaperone, has an inactive PPIase domain compare
ECD_00124 -4.1 -3.9 hypoxanthine phosphoribosyltransferase compare
ECD_03685 -4.0 -2.7 diaminopimelate epimerase compare
ECD_03257 -4.0 -4.7 response regulator in two-component regulatory system with EnvZ compare
ECD_02820 -3.9 -1.5 hypothetical protein compare
ECD_03897 -3.8 -5.8 glucosephosphate isomerase compare
ECD_00366 -3.6 -3.4 phosphatidylglycerophosphatase A compare
ECD_03752 -3.4 -15.8 coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent compare
ECD_02237 -3.4 -4.6 amidophosphoribosyltransferase compare
ECD_00949 -3.3 -2.2 dihydro-orotate oxidase, FMN-linked compare
ECD_04346 -3.3 -2.8 hypothetical protein compare
ECD_00015 -3.3 -5.4 chaperone Hsp40, DnaK co-chaperone compare
ECD_03590 -3.2 -3.8 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_02111 -3.2 -2.2 uncharacterized protein compare
ECD_02250 -3.2 -1.2 uncharacterized protein compare
ECD_02607 -3.1 -2.4 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_02038 -3.1 -1.2 hypothetical protein compare
ECD_04107 -3.0 -2.1 trehalose-6-P hydrolase compare
ECD_00749 -3.0 -2.6 inactive molybdopterin adenylyltransferase compare
ECD_01223 -3.0 -2.0 cardiolipin synthase 1 compare
ECD_00053 -2.9 -4.4 diadenosine tetraphosphatase compare
ECD_03349 -2.9 -9.3 glutathione oxidoreductase compare
ECD_02393 -2.9 -3.4 polyphosphate kinase, component of RNA degradosome compare
ECD_02280 -2.9 -2.0 hybrid sensory histidine kinase in two-component regulatory system with EvgA compare
ECD_01258 -2.9 -1.9 orotidine-5'-phosphate decarboxylase compare
ECD_00695 -2.8 -1.5 putative inner membrane protein in cydABX-ybgE operon compare
ECD_03591 -2.8 -3.0 tryptophanase leader peptide compare
ECD_04193 -2.8 -2.4 fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor compare
ECD_01898 -2.7 -1.8 nitrogen assimilation regulon transcriptional regulator; autorepressor compare
ECD_01066 -2.7 -3.2 export chaperone for FlgK and FlgL compare
ECD_00228 -2.7 -3.4 mRNA interferase toxin of the YafO-YafN toxin-antitoxin system compare
ECD_00930 -2.7 -2.0 M15A protease-related family periplasmic protein compare
ECD_01726 -2.7 -1.8 molybdopterin synthase sulfurtransferase compare
ECD_01604 -2.7 -1.8 dipeptide and tripeptide permease A compare
ECD_02318 -2.6 -1.4 pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase compare
ECD_01801 -2.6 -3.1 carboxy-terminal protease for penicillin-binding protein 3 compare
ECD_03818 -2.6 -3.8 essential cell division protein compare
ECD_04119 -2.5 -1.3 SopA-central-domain-like hexapeptide repeat protein compare
ECD_00802 -2.5 -1.8 ribosomal protein S12 methylthiotransferase compare
ECD_03238 -2.5 -4.8 D-ribulose-5-phosphate 3-epimerase compare
ECD_04042 -2.5 -4.4 HflB protease modulator specific for phage lambda cII repressor compare
ECD_00974 -2.5 -2.9 Modulator of FtsH protease, inner membrane protein compare
ECD_01849 -2.5 -1.7 proton seal during flagellar secretion compare
ECD_01584 -2.5 -1.7 putative outer membrane porin for beta-glucuronides porin protein compare
ECD_01586 -2.5 -1.6 beta-D-glucuronidase compare
ECD_00185 -2.4 -2.8 putative lyase compare
ECD_03625 -2.3 -6.9 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_02508 -2.3 -1.6 tmRNA-binding trans-translation protein compare
ECD_00322 -2.3 -1.2 putative transcriptional regulator compare
ECD_01230 -2.3 -1.5 outer membrane protein W compare
ECD_00585 -2.3 -1.5 citrate lyase, acyl carrier (gamma) subunit compare
ECD_01370 -2.3 -1.5 aldehyde dehydrogenase A, NAD-linked compare
ECD_00708 -2.2 -3.0 phosphoglyceromutase 1 compare
ECD_01162 -2.2 -1.5 fatty acid metabolism regulon transcriptional regulator compare
ECD_03086 -2.2 -4.2 sialic acid-inducible nan operon repressor compare
ECD_01273 -2.2 -1.4 putrescine importer compare
ECD_02223 -2.2 -3.3 putative inner membrane transporter; C4-dicarboxylate anaerobic carrier family protein compare
ECD_00651 -2.2 -2.2 response regulator in two-component regulatory system with KdpD compare
ECD_01755 -2.2 -1.4 putative diguanylate cyclase compare
ECD_01109 -2.2 -1.5 L,D-transpeptidase linking Lpp to murein compare
ECD_00899 -2.2 -1.7 dimethyl sulfoxide reductase, anaerobic, subunit B compare
ECD_02449 -2.2 -10.4 phosphoribosylformyl-glycineamide synthetase compare
ECD_03816 -2.2 -5.4 molecular chaperone and ATPase component of HslUV protease compare
ECD_03256 -2.2 -8.3 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_00634 -2.1 -2.1 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_02529 -2.1 -3.2 hydrogen donor for NrdEF electron transport system; glutaredoxin-like protein compare
ECD_01443 -2.1 -1.4 D,D-dipeptide ABC transporter permease compare
ECD_03731 -2.1 -5.0 TatABCE protein translocation system subunit compare
ECD_02229 -2.0 -2.8 putative NAD-dependent nucleotide-sugar epimerase compare
ECD_01760 -2.0 -1.9 putative MFS transporter, inner membrane protein compare
ECD_01773 -2.0 -1.3 putative YeaWX dioxygenase beta subunit, reductase component compare
ECD_02910 -2.0 -3.4 ATP-Grasp family ATPase compare
ECD_02220 -2.0 -1.0 UPF0208 family inner membrane protein compare
ECD_02257 -2.0 -3.3 DUF2544 family putative outer membrane protein compare
ECD_04041 -2.0 -3.3 modulator for HflB protease specific for phage lambda cII repressor compare
ECD_00501 -2.0 -2.4 uncharacterized protein, DLP12 prophage compare
ECD_01561 -2.0 -1.3 H(+)/Cl(-) exchange transporter compare
ECD_03920 -2.0 -2.3 uncharacterized protein compare
ECD_04212 -2.0 -2.3 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB compare
ECD_03451 -2.0 -2.5 TPR-like repeat protein compare
ECD_02120 -2.0 -2.2 response regulator in two-component regulatory system with NarQ compare
ECD_00898 -2.0 -2.7 dimethyl sulfoxide reductase, anaerobic, subunit A compare
ECD_03143 -1.9 -4.9 zntA gene transcriptional activator compare
ECD_00753 -1.9 -2.6 putative acetate transporter; BAX Inhibitor-1 family inner membrane protein compare
ECD_01399 -1.9 -1.3 putative ABC transporter permease compare
ECD_00021 -1.9 -2.1 putative usher protein compare
ECD_02889 -1.9 -4.8 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) compare
ECD_00450 -1.9 -1.4 conserved protein, rhs-like protein compare
ECD_00938 -1.9 -1.9 aliphatic sulfonate ABC transporter permease compare
ECD_03121 -1.9 -1.2 putative membrane protein compare
ECD_00464 -1.9 -2.4 glycerate kinase II compare
ECD_01478 -1.9 -1.2 altronate oxidoreductase, NAD-dependent compare
ECD_01043 -1.8 -2.2 stationary phase cardiolipin synthase 3 compare
ECD_01275 -1.8 -2.2 gamma-glutamyl-gamma-aminobutyrate hydrolase compare
ECD_00864 -1.8 -2.5 23S rRNA m(5)U747 methyltransferase, SAM-dependent compare
ECD_01899 -1.8 -2.1 L,D-transpeptidase linking Lpp to murein compare
ECD_00873 -1.8 -2.1 putative NAD(P)H-dependent oxidoreductase compare
ECD_00156 -1.8 -2.9 UPF0126 family inner membrane protein compare
ECD_00354 -1.8 -3.7 tRNA-guanine transglycosylase compare
ECD_01651 -1.8 -1.7 SufBCD Fe-S cluster assembly scaffold protein, ATP-binding protein compare
ECD_02825 -1.8 -1.5 Pyrophosphorylase compare
ECD_00432 -1.8 -1.2 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase compare
ECD_00054 -1.8 -2.5 protein associated with Co2+ and Mg2+ efflux compare
ECD_01774 -1.8 -1.0 ribonuclease D compare
ECD_01014 -1.8 -1.8 ureidoacrylate amidohydrolase compare
ECD_02056 -1.8 -1.7 transcriptional activator of csgD and csgBA compare
ECD_01841 -1.8 -1.7 carboxy-SAM synthase compare
ECD_01931 -1.8 -2.4 6-phosphogluconate dehydrogenase, decarboxylating compare
ECD_01235 -1.7 -1.2 tryptophan synthase, beta subunit compare
ECD_01946 -1.7 -0.9 dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit compare
ECD_02459 -1.7 -1.5 gap repair protein compare
ECD_01706 -1.7 -1.1 N,N'-diacetylchitobiose-specific enzyme IIC component of PTS compare
ECD_02042 -1.7 -0.9 DUF2574 family protein compare
ECD_01064 -1.7 -1.7 putative oxidoreductase compare
ECD_02027 -1.7 -1.3 ADP-ribosylglycohydrolase family protein compare
ECD_02286 -1.7 -0.9 putative lipoprotein involved in colanic acid biosynthesis compare
ECD_01814 -1.7 -1.1 C-N hydrolase family protein compare
ECD_01096 -1.7 -2.0 putative DNase compare
ECD_01800 -1.7 -1.6 putative endopeptidase compare
ECD_01894 -1.7 -1.6 AMP nucleosidase compare
ECD_03488 -1.7 -4.3 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_01040 -1.7 -1.3 curli assembly protein compare
ECD_01864 -1.6 -1.6 universal stress protein compare
ECD_00407 -1.6 -1.2 DUF1428 family protein compare
ECD_02046 -1.6 -4.0 DUF4132 domain-containing protein compare
ECD_03353 -1.6 -1.9 hypothetical protein compare
ECD_00260 -1.6 -2.4 reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide-dependent disulfide oxidoreductase family compare
ECD_03817 -1.6 -3.8 peptidase component of the HslUV protease compare
ECD_00296 -1.6 -2.8 thiogalactoside acetyltransferase compare
ECD_02473 -1.6 -1.5 autonomous glycyl radical cofactor compare
ECD_02398 -1.6 -1.4 nalidixic acid resistance protein, putative periplasmic protein compare
ECD_01954 -1.6 -0.8 phosphomannomutase compare
ECD_00646 -1.6 -3.1 lipoprotein compare
ECD_01220 -1.6 -1.9 oligopeptide ABC transporter ATPase compare
ECD_02174 -1.6 -1.9 putative DNA-binding transcriptional regulator for the rhm operon compare
ECD_02169 -1.6 -2.8 anaerobic sn-glycerol-3-phosphate dehydrogenase, C subunit, 4Fe-4S iron-sulfur cluster compare
ECD_02909 -1.6 -3.3 DUF1190 family protein compare
ECD_00281 -1.5 -2.6 uncharacterized protein compare
ECD_01048 -1.5 -1.3 multicopy suppressor of secY and secA compare
ECD_03314 -1.5 -3.9 16S rRNA m(2)G966 methyltransferase, SAM-dependent compare
ECD_03070 -1.5 -5.6 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase compare
ECD_02108 -1.5 -1.9 microcin C ABC transporter permease compare
ECD_00850 -1.5 -2.0 putative regulator of late gene expression compare
ECD_03097 -1.5 -4.3 l-arginine-responsive arginine metabolism regulon transcriptional regulator compare
ECD_01408 -1.5 -2.0 putative iron outer membrane transporter compare
ECD_01889 -1.5 -0.8 cytochrome b561-like protein compare
ECD_03144 -1.5 -0.9 DUF1992 family protein compare
ECD_00555 -1.5 -2.2 ferrienterobactin ABC transporter ATPase compare
ECD_00867 -1.5 -1.3 arginine ABC transporter permease compare
ECD_02391 -1.5 -2.7 phosphoribosylaminoimidazole synthetase compare
ECD_01255 -1.5 -1.4 phosphatidylglycerophosphatase B compare
ECD_00862 -1.5 -2.0 putrescine ABC transporter permease compare
ECD_02048 -1.4 -1.6 putative hexameric AAA+ MoxR family ATPase compare
ECD_03697 -1.4 -2.7 PRK11371 family inner membrane protein compare
ECD_02319 -1.4 -3.5 uncharacterized protein compare
ECD_01779 -1.4 -0.8 putative reactive intermediate deaminase compare
ECD_03013 -1.4 -3.0 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent compare
ECD_00831 -1.4 -1.3 retron EC86 RNA-directed DNA polymerase-like protein compare
ECD_02138 -1.4 -3.4 microcin J25 efflux ABC transporter permease/ATPase compare
ECD_03106 -1.4 -5.6 ribonuclease G compare
ECD_03883 -1.4 -9.0 IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase compare
ECD_01305 -1.4 -1.4 S9-like protein non-peptidase family protein compare
ECD_01614 -1.4 -1.4 putative membrane fusion protein (MFP) of YdhJK efflux pump compare
ECD_01441 -1.4 -0.9 D,D-dipeptide ABC transporter ATPase compare
ECD_01039 -1.4 -0.7 curlin subunit, amyloid curli fibers, cryptic compare
ECD_04048 -1.4 -2.2 DUF2170 family protein compare
ECD_00442 -1.4 -0.9 iron export ABC transporter permease; peroxide resistance protein compare
ECD_00752 -1.4 -1.1 molybdopterin synthase, large subunit compare
ECD_01200 -1.4 -1.9 sensory histidine kinase in two-component regulatory system with NarL compare
ECD_02335 -1.4 -2.2 N-acetylmuramoyl-l-alanine amidase I compare
ECD_00865 -1.4 -2.1 arginine ABC transporter periplasmic binding protein compare
ECD_01181 -1.4 -1.9 C4-dicarboxylic acid transporter compare
ECD_01693 -1.4 -1.0 uncharacterized protein compare
ECD_00951 -1.4 -2.2 6-N-hydroxylaminopurine detoxification oxidoreductase compare
ECD_01551 -1.4 -0.5 UPF0060 family inner membrane protein compare
ECD_01668 -1.4 -0.7 putative oxidoreductase compare
ECD_01058 -1.4 -0.9 dihydro-orotase compare
ECD_04050 -1.4 -3.2 DUF2491 family protein compare
ECD_00192 -1.4 -3.0 putative lipoprotein compare
ECD_01488 -1.4 -0.7 putative phage protein compare
ECD_04389 -1.4 -1.8 hypothetical protein compare
ECD_01318 -1.4 -1.6 diguanylate cyclase, csgD regulator compare
ECD_03339 -1.4 -4.1 hypothetical protein compare
ECD_02920 -1.4 -2.3 DUF1449 family inner membrane protein compare
ECD_00896 -1.4 -2.0 recombination intermediate processing DNA-dependent ATPase compare
ECD_02400 -1.3 -2.4 IMP dehydrogenase compare
ECD_00274 -1.3 -1.9 ankyrin repeat protein compare
ECD_04185 -1.3 -1.2 periplasmic chaperone compare
ECD_00559 -1.3 -1.6 ferrienterobactin ABC transporter periplasmic binding protein compare
ECD_03885 -1.3 -6.2 homoserine O-transsuccinylase compare
ECD_04049 -1.3 -1.3 PspA/IM30 family protein compare
ECD_01046 -1.3 -2.2 OPG biosynthetic ACP-dependent transmembrane UDP-glucose beta-1,2 glycosyltransferase; nutrient-dependent cell size regulator, FtsZ assembly antagonist compare
ECD_02059 -1.3 -1.6 putative ABC transporter ATPase compare
ECD_02383 -1.3 -5.7 hydrogenase-4 transcriptional activator compare
ECD_00081 -1.3 -3.9 transcriptional repressor-activator for carbon metabolism compare
ECD_01045 -1.3 -1.2 OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase compare
ECD_01851 -1.3 -1.3 flagellin export apparatus, substrate specificity protein compare


Specific Phenotypes

For 2 genes in this experiment