Experiment set4IT005 for Escherichia coli BL21

Compare to:

Mixed culture, Bdellovibrio bacteriovorus HD100_1

200 most detrimental genes:

  gene name fitness t score description  
ECD_01487 +3.3 18.0 phage N15 gp48-like protein compare
ECD_01719 +3.1 2.8 TVP38/TMEM64 family inner membrane protein compare
ECD_02033 +3.0 6.3 hypothetical protein compare
ECD_01681 +3.0 5.5 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_01619 +2.9 9.6 transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated compare
ECD_01810 +2.9 2.5 DUF2511 family protein compare
ECD_01281 +2.9 9.9 regulatory protein for phage-shock-protein operon compare
ECD_01556 +2.9 2.5 putative selenate reductase, periplasmic compare
ECD_01625 +2.8 3.2 murein DD-endopeptidase, space-maker hydrolase compare
ECD_01059 +2.8 3.7 lipoprotein, DUF1439 family compare
ECD_01310 +2.7 3.4 stress-induced protein compare
ECD_01489 +2.6 6.2 transcriptional repressor of multiple antibiotic resistance compare
ECD_t00039 +2.5 6.4 tRNA-Ala compare
ECD_02021 +2.5 10.7 D-tagatose 1,6-bisphosphate aldolase 2, subunit compare
ECD_01084 +2.5 13.7 DUF177 family protein compare
ECD_01897 +2.5 2.6 ssuEADCB/tauABCD operon transcriptional activator compare
ECD_01702 +2.5 4.4 chito-oligosaccharide deacetylase compare
ECD_01245 +2.5 7.2 23S rRNA pseudouridine(2605) synthase compare
ECD_01557 +2.5 3.6 S- and N-oxide reductase, A subunit, periplasmic compare
ECD_01629 +2.4 5.7 transcriptional repressor, hypoxanthine-binding compare
ECD_01276 +2.4 8.9 repressor for the divergent puu operons, putrescine inducible compare
ECD_01459 +2.4 2.1 putative oxidoreductase compare
ECD_01160 +2.4 9.3 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_02024 +2.4 7.1 D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit compare
ECD_03556 +2.3 3.6 ilvB operon leader peptide compare
ECD_01240 +2.3 4.9 PHP domain protein compare
ECD_01713 +2.3 3.0 succinylglutamate desuccinylase compare
ECD_01737 +2.3 1.8 nicotinamidase/pyrazinamidase compare
ECD_01250 +2.2 3.1 DNA topoisomerase I, omega subunit compare
ECD_01081 +2.2 6.7 uncharacterized protein compare
ECD_02179 +2.2 14.8 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent compare
ECD_01063 +2.1 3.7 UPF0502 family protein compare
ECD_01611 +2.1 9.3 outer membrane lipoprotein compare
ECD_02090 +2.1 4.3 nucleoside permease compare
ECD_t00008 +2.0 7.1 tRNA-Gln compare
ECD_02178 +2.0 10.5 putative LPS core heptose(II)-phosphate phosphatase compare
ECD_02097 +2.0 8.5 fructose-1-phosphate kinase compare
ECD_04342 +2.0 14.7 hypothetical protein compare
ECD_01121 +2.0 3.2 spermidine/putrescine ABC transporter periplasmic binding protein compare
ECD_01799 +2.0 1.9 putative transporter compare
ECD_01082 +2.0 8.9 23S rRNA pseudouridine(955,2504,2580) synthase compare
ECD_02018 +2.0 7.9 galactitol-specific enzyme IIC component of PTS compare
ECD_02105 +1.9 15.5 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase compare
ECD_01263 +1.9 4.7 ribonuclease II compare
ECD_01579 +1.9 4.6 inhibitor of replication at Ter, DNA-binding protein compare
ECD_01784 +1.9 6.8 L-serine dehydratase 1 compare
ECD_01770 +1.9 2.3 D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase compare
ECD_01492 +1.9 3.0 cysteine and O-acetyl-L-serine efflux system compare
ECD_02182 +1.8 8.8 undecaprenyl phosphate-alpha-L-ara4FN deformylase compare
ECD_01374 +1.8 3.2 cytochrome b561 compare
ECD_00970 +1.8 5.9 heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein compare
ECD_02278 +1.8 1.9 multidrug resistance efflux pump membrane fusion protein compare
ECD_01589 +1.8 2.1 transcriptional repressor of Mal regulon compare
ECD_01835 +1.8 1.8 UPF0082 family protein compare
ECD_01381 +1.8 5.1 OPG biosynthetic periplasmic protein compare
ECD_01802 +1.8 8.6 RNA chaperone, putative ProP translation regulator compare
ECD_02098 +1.8 6.6 fused fructose-specific PTS enzymes: IIA component/HPr component compare
ECD_01826 +1.8 4.7 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_01435 +1.7 2.5 putative DNA-binding transcriptional regulator compare
ECD_00998 +1.7 2.6 response regulator in two-component regulatory system with TorS compare
ECD_01844 +1.7 2.0 TMAO reductase III (TorYZ), cytochrome c-type subunit compare
ECD_01703 +1.7 3.1 phospho-chitobiase; general 6-phospho-beta-glucosidase activity compare
ECD_02181 +1.7 13.0 fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase compare
ECD_01828 +1.7 3.9 zinc ABC transporter periplasmic binding protein compare
ECD_00574 +1.7 10.1 alkyl hydroperoxide reductase, C22 subunit compare
ECD_01854 +1.7 3.2 fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA compare
ECD_00509 +1.7 4.8 DLP12 prophage; putative lipoprotein compare
ECD_00781 +1.7 10.3 outer membrane protein X compare
ECD_00901 +1.7 1.8 putative isochorismatase family hydrolase compare
ECD_02180 +1.7 11.8 undecaprenyl phosphate-L-Ara4FN transferase compare
ECD_t00038 +1.7 5.0 tRNA-Arg compare
ECD_01798 +1.7 6.1 KDG regulon transcriptional repressor compare
ECD_02523 +1.7 10.3 tributyltin-inducible repressor of ygaVP compare
ECD_01164 +1.6 3.8 D-amino acid dehydrogenase compare
ECD_01289 +1.6 1.3 putative sugar ABC transporter permease compare
ECD_01875 +1.6 9.8 tyrosine transporter compare
ECD_01836 +1.6 6.3 dihydroneopterin triphosphate pyrophosphatase compare
ECD_01021 +1.6 4.6 deferrrochelatase, periplasmic compare
ECD_00882 +1.6 7.6 DUF535 family protein compare
ECD_00392 +1.6 7.8 HU, DNA-binding transcriptional regulator, beta subunit compare
ECD_01960 +1.5 2.3 putative acyl transferase compare
ECD_01080 +1.5 3.9 endoribonuclease; RNA-binding protein compare
ECD_01930 +1.5 8.2 UDP-glucose 6-dehydrogenase compare
ECD_00961 +1.5 8.8 outer membrane protein A (3a compare
ECD_04293 +1.5 4.0 inhibitor of glucose uptake compare
ECD_01168 +1.5 1.2 lytic murein endotransglycosylase E compare
ECD_01019 +1.5 1.7 putative membrane protein compare
ECD_01912 +1.5 1.7 DNA gyrase inhibitor compare
ECD_01727 +1.5 1.1 CDP-alcohol phosphatidyltransferase family inner membrane protein compare
ECD_01977 +1.5 1.2 ser/thr phosphatase-related protein compare
ECD_01739 +1.5 2.9 putative DNA-binding transcriptional regulator compare
ECD_01562 +1.5 1.1 putative dethiobiotin synthetase compare
ECD_01026 +1.5 2.2 biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1,6-N-acetyl-D-glucosamine export protein compare
ECD_02085 +1.4 10.0 lysine transporter compare
ECD_01391 +1.4 1.2 BenE family inner membrane putative transporter compare
ECD_01803 +1.4 3.6 free methionine-(R)-sulfoxide reductase compare
ECD_00077 +1.4 8.9 leu operon leader peptide compare
ECD_00381 +1.4 7.6 cytochrome o ubiquinol oxidase subunit III compare
ECD_02276 +1.4 7.4 D-serine dehydratase compare
ECD_02289 +1.4 6.8 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase compare
ECD_00311 +1.4 4.3 regulator protein that represses frmRAB operon compare
ECD_01020 +1.4 4.3 inactive ferrous ion transporter EfeUOB compare
ECD_00380 +1.4 1.8 cytochrome o ubiquinol oxidase subunit IV compare
ECD_00001 +1.4 3.0 thr operon leader peptide compare
ECD_00382 +1.4 10.5 cytochrome o ubiquinol oxidase subunit I compare
ECD_01795 +1.4 3.5 putative inner membrane protein compare
ECD_01906 +1.4 1.6 hypothetical protein compare
ECD_01671 +1.3 3.3 phosphoenolpyruvate synthase compare
ECD_02404 +1.3 2.1 BamABCDE complex OM biogenesis lipoprotein compare
ECD_02686 +1.3 11.6 diaminopimelate decarboxylase, PLP-binding compare
ECD_00947 +1.3 1.9 putative fimbrial-like adhesin protein compare
ECD_01097 +1.3 3.8 fused glucose-specific PTS enzymes: IIB component/IIC component compare
ECD_00807 +1.3 1.2 deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx compare
ECD_02369 +1.3 6.0 BamABCDE complex OM biogenesis lipoprotein compare
ECD_t00054 +1.3 5.7 tRNA-Gly compare
ECD_04388 +1.3 3.9 putative membrane-bound BasS regulator compare
ECD_02416 +1.3 3.3 Fe(2+) donor and activity modulator for cysteine desulfurase compare
ECD_01302 +1.3 2.0 L-Ala-D/L-Glu epimerase compare
ECD_01624 +1.3 2.2 glutaredoxin-4 compare
ECD_02244 +1.3 4.5 putative semialdehyde dehydrogenase compare
ECD_00383 +1.2 7.3 cytochrome o ubiquinol oxidase subunit II compare
ECD_00863 +1.2 1.7 DUF2593 family inner membrane protein compare
ECD_01601 +1.2 1.1 SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex compare
ECD_02177 +1.2 1.2 nucleoside triphosphatase compare
ECD_00379 +1.2 7.6 protoheme IX farnesyltransferase compare
ECD_00795 +1.2 4.2 Isoaspartyl peptidase compare
ECD_00939 +1.2 1.6 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
ECD_01060 +1.2 1.2 glutaredoxin 2 (Grx2) compare
ECD_00443 +1.2 5.5 DnaK co-chaperone, thioredoxin-like protein compare
ECD_00883 +1.2 3.9 macrolide transporter membrane fusion protein (MFP) component compare
ECD_03118 +1.2 7.5 tRNA-dihydrouridine synthase B compare
ECD_02423 +1.2 5.8 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare
ECD_00112 +1.2 8.1 pyruvate dehydrogenase complex repressor; autorepressor compare
ECD_01824 +1.2 4.0 putative DNA-binding transcriptional regulator compare
ECD_00955 +1.2 1.1 paraquat-inducible, SoxRS-regulated MCE domain protein compare
ECD_00406 +1.2 3.3 excision repair protein, alkyltransferase-like protein ATL compare
ECD_01736 +1.2 1.3 cytoplasmic L-asparaginase 1 compare
ECD_01929 +1.2 6.1 regulator of length of O-antigen component of lipopolysaccharide chains compare
ECD_00758 +1.2 1.4 inner membrane protein compare
ECD_01298 +1.1 2.3 DUF463 family protein, putative P-loop NTPase compare
ECD_01825 +1.1 2.8 pyruvate kinase II compare
ECD_00671 +1.1 4.7 putative allophanate hydrolase, subunit 1 compare
ECD_02063 +1.1 2.4 D-lactate dehydrogenase, FAD-binding, NADH independent compare
ECD_02539 +1.1 9.2 transcriptional repressor of microcin B17 synthesis and multidrug efflux compare
ECD_02371 +1.1 6.3 transcriptional repressor, regulatory protein accessory to GcvA compare
ECD_01751 +1.1 2.4 scaffolding protein for murein synthesizing machinery compare
ECD_00606 +1.1 4.2 ribosomal silencing factor compare
ECD_01148 +1.1 1.5 hypothetical protein compare
ECD_t00085 +1.1 5.0 tRNA-Leu compare
ECD_01957 +1.1 0.9 GDP-mannose mannosyl hydrolase compare
ECD_01068 +1.1 1.9 assembly protein for flagellar basal-body periplasmic P ring compare
ECD_01789 +1.1 1.0 mannose-specific enzyme IID component of PTS compare
ECD_00061 +1.1 9.9 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase compare
ECD_00893 +1.1 4.9 leucine-responsive global transcriptional regulator compare
ECD_00375 +1.1 7.6 putative transporter compare
ECD_00911 +1.1 4.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
ECD_02390 +1.1 6.5 uracil phosphoribosyltransferase compare
ECD_00481 +1.1 0.7 putative periplasmic pilus chaperone compare
ECD_01161 +1.0 2.3 sodium:proton antiporter compare
ECD_02324 +1.0 2.5 sulfate/thiosulfate ABC transporter permease compare
ECD_01852 +1.0 0.8 chemotaxis regulator, protein phosphatase for CheY compare
ECD_01860 +1.0 2.2 protein that enables flagellar motor rotation compare
ECD_02152 +1.0 2.4 DUF2135 family protein, putative host defense protein compare
ECD_01105 +1.0 2.5 respiratory NADH dehydrogenase 2/cupric reductase compare
ECD_02096 +1.0 3.1 fused fructose-specific PTS enzymes: IIBcomponent/IIC components compare
ECD_02189 +1.0 1.5 dihydroxynaphthoic acid synthetase compare
ECD_01692 +1.0 1.3 6-phosphofructokinase II compare
ECD_01746 +1.0 2.0 DUF1315 family protein compare
ECD_00456 +1.0 6.9 glyoxylate-inducible transcriptional repressor of all and gcl operons compare
ECD_01959 +1.0 2.8 GDP-D-mannose dehydratase, NAD(P)-binding compare
ECD_01390 +1.0 1.2 IS609 transposase B compare
ECD_00461 +1.0 1.6 putative allantoin transporter compare
ECD_02482 +1.0 7.1 protein disaggregation chaperone compare
ECD_02242 +1.0 3.1 DedA family inner membrane protein compare
ECD_00417 +1.0 3.7 DUF2496 family protein compare
ECD_t00011 +1.0 2.0 tRNA-Gln compare
ECD_00913 +1.0 2.0 putative peptidase-related chaperone compare
ECD_01365 +1.0 0.9 putative esterase compare
ECD_02424 +1.0 4.0 tRNA mC32,mU32 2'-O-methyltransferase, SAM-dependent compare
ECD_00130 +1.0 2.8 aspartate 1-decarboxylase compare
ECD_01717 +1.0 3.0 succinylornithine transaminase, PLP-dependent compare
ECD_02183 +1.0 5.4 4-amino-4-deoxy-L-arabinose transferase compare
ECD_00670 +1.0 2.0 NIF3 family metal-binding protein compare
ECD_01322 +0.9 2.1 Rac prophage; integrase compare
ECD_02484 +0.9 5.9 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_00937 +0.9 2.1 aliphatic sulfonate ABC transporter ATPase compare
ECD_02505 +0.9 7.3 lipoprotein component of BamABCDE OM biogenesis complex compare
ECD_00415 +0.9 5.4 transcriptional repressor compare
ECD_02677 +0.9 8.1 PEP-protein phosphotransferase enzyme I; GAF domain containing protein compare
ECD_01910 +0.9 0.9 UPF0265 family protein compare
ECD_01287 +0.9 1.6 putative ABC sugar transporter periplasmic binding protein compare
ECD_04084 +0.9 2.2 DUF24 family HxlR-type putative transcriptional regulator compare
ECD_02475 +0.9 4.4 putative methyltransferase compare
ECD_01632 +0.9 1.8 cyclopropane fatty acyl phospholipid synthase, SAM-dependent compare
ECD_00744 +0.9 1.8 malonyl-ACP O-methyltransferase, SAM-dependent compare
ECD_01865 +0.9 1.1 trehalose-6-phosphate synthase compare
ECD_01955 +0.9 2.1 mannose-1-phosphate guanyltransferase compare
ECD_00028 +0.9 3.8 uncharacterized protein compare
ECD_00849 +0.9 1.9 putative DNA-invertase compare
ECD_00868 +0.9 2.1 arginine transporter subunit compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in balo experiments