Experiment set4IT005 for Agrobacterium fabrum C58

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
Atu1307 -2.8 -6.2 dihydroorotase compare
Atu0184 -2.5 -3.3 glucokinase compare
Atu1687 -2.5 -7.0 anthranilate phosphoribosyltransferase compare
Atu2289 -2.5 -13.3 anthranilate synthase component I and II compare
Atu0400 -2.4 -6.4 orotate phosphoribosyltransferase compare
Atu1685 -2.0 -1.5 hypothetical protein compare
Atu1688 -2.0 -4.6 indole-3-glycerol-phosphate synthase compare
Atu0298 -2.0 -5.4 orotidine 5 compare
Atu2710 -1.8 -10.2 hypothetical protein compare
Atu0399 -1.8 -6.0 dihydroorotase compare
Atu1223 -1.7 -2.1 hypothetical protein compare
Atu0486 -1.6 -3.9 dihydroorotate dehydrogenase compare
Atu2073 -1.6 -4.6 membrane protein compare
Atu0346 -1.6 -3.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1163 -1.6 -3.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1030 -1.6 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1028 -1.6 -3.6 hypothetical protein compare
Atu1308 -1.6 -6.4 aspartate carbamoyl transferase catalytic subunit compare
Atu1844 -1.5 -2.3 Phosphoribosylformylglycinamidine synthetase compare
Atu0017 -1.5 -2.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0103 -1.5 -8.0 penicillin-binding protein compare
Atu0434 -1.5 -3.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1446 -1.5 -2.8 two component response regulator compare
Atu3469 -1.5 -2.5 phosphoglyceromutase compare
Atu2662 -1.4 -1.9 acetyltransferase compare
Atu0189 -1.4 -5.0 ABC transporter, membrane spanning protein (peptide) compare
Atu0941 -1.4 -1.2 hypothetical protein compare
Atu2799 -1.3 -4.5 precorrin-6x reductase compare
Atu0769 -1.3 -1.7 protoheme IX farnesyltransferase compare
Atu2728 -1.3 -4.2 beta (1-->2) glucan export ATP-binding protein compare
Atu1845 -1.3 -4.1 phosphoribosylformylglycinamidine synthase I compare
Atu1686 -1.3 -8.4 peptidyl-prolyl cis-trans isomerse D compare
Atu4890 -1.2 -1.8 IS426 transposase compare
Atu2805 -1.2 -4.3 cobalamin synthesis protein compare
Atu2800 -1.2 -1.4 precorrin-3B C17-methyltransferase compare
Atu1891 -1.1 -2.9 cobalamin biosynthesis protein compare
Atu3429 -1.1 -1.6 hypothetical protein compare
Atu5540 -1.1 -0.9 hypothetical protein compare
Atu3598 -1.1 -1.0 thiol:disulfide interchange protein compare
Atu0971 -1.1 -3.8 two component sensor kinase compare
Atu5061 -1.0 -3.2 glycerophosphoryl diester phosphodiesterase compare
Atu0598 -1.0 -6.3 phosphogluconate dehydratase compare
Atu0976 -1.0 -1.7 cycL protein compare
Atu0190 -1.0 -5.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0972 -1.0 -3.6 lipA protein compare
Atu2368 -1.0 -1.5 hypothetical protein compare
Atu2439 -1.0 -1.3 hypothetical protein compare
Atu1874 -1.0 -2.0 RecA protein compare
Atu2554 -1.0 -1.8 lysyl-tRNA synthetase compare
Atu4773 -1.0 -1.6 two component response regulator compare
Atu3707 -1.0 -2.6 phosphoserine aminotransferase compare
Atu0647 -1.0 -4.4 phosphoribosylamine--glycine ligase compare
Atu1774 -1.0 -6.1 ABC transporter, substrate binding protein (peptide) compare
Atu6114 -1.0 -0.9 hypothetical protein compare
Atu1850 -1.0 -3.6 phosphoribosylformylglycinamidine synthetase II compare
Atu0031 -1.0 -1.6 PTS system, IIA component compare
Atu2798 -1.0 -3.5 precorrin-6y methyltransferase compare
Atu0086 -1.0 -1.1 ribosome-binding factor A compare
Atu1075 -0.9 -4.1 amidophosphoribosyltransferase compare
Atu2801 -0.9 -2.8 precorrin-2 C20 methyltransferase compare
Atu1140 -0.9 -3.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4418 -0.9 -3.9 glutaryl-CoA dehydrogenase compare
Atu0977 -0.9 -3.0 serine protease DO-like protease compare
Atu2207 -0.9 -2.9 two component sensor kinase compare
Atu1355 -0.9 -4.8 hypothetical protein compare
Atu2067 -0.9 -1.2 hypothetical protein compare
Atu3754 -0.9 -5.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1542 -0.8 -4.5 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0401 -0.8 -4.6 fructokinase compare
Atu4896 -0.8 -2.1 acetyltransferase compare
Atu2640 -0.8 -2.7 hypothetical protein compare
Atu4161 -0.8 -1.7 hypothetical protein compare
Atu0188 -0.8 -2.2 ABC transporter, membrane spanning protein (peptide) compare
Atu3121 -0.8 -0.8 cold shock protein compare
Atu2349 -0.8 -1.5 hypothetical protein compare
Atu5125 -0.8 -2.8 GntR family transcriptional regulator compare
Atu1110 -0.8 -1.4 cytosol aminopeptidase compare
Atu4317 -0.8 -1.7 TetR family transcriptional regulator compare
Atu2796 -0.8 -2.6 precorrin-4 C11-methyltransferase compare
Atu5470 -0.7 -1.6 hypothetical protein compare
Atu3496 -0.7 -1.5 hypothetical protein compare
Atu2808 -0.7 -3.7 cobyric acid synthase compare
Atu1629 -0.7 -1.2 transcriptional regulator, ArsR family compare
Atu2804 -0.7 -4.7 cobaltochelatase subunit compare
Atu2809 -0.7 -4.0 cobalamin biosynthesis protein compare
Atu0322 -0.7 -2.9 enoyl CoA hydratase compare
Atu2036 -0.7 -4.7 acetolactate synthase III, large subunit compare
Atu4075 -0.7 -3.3 glycogen synthase compare
Atu0939 -0.7 -1.9 PemI protein compare
Atu3120 -0.7 -0.9 hypothetical protein compare
Atu2807 -0.7 -3.1 cob(I)alamin adenosyltransferase compare
Atu2733 -0.7 -2.6 hypothetical protein compare
Atu3755 -0.6 -2.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0535 -0.6 -2.6 hypothetical protein compare
Atu2802 -0.6 -3.9 precorrin-8X methylmutase compare
Atu3486 -0.6 -2.1 DeoR family transcriptional regulator compare
Atu0043 -0.6 -1.2 imidazoleglycerol-phosphate dehydratase compare
Atu4306 -0.6 -2.8 two component response regulator compare
Atu1344 -0.6 -1.7 hypothetical protein compare
Atu0690 -0.6 -1.2 hypothetical protein compare
Atu2684 -0.6 -0.8 hypothetical protein compare
Atu1588 -0.6 -3.2 homoserine dehydrogenase compare
Atu2083 -0.6 -2.1 DNA repair protein RecN compare
Atu1515 -0.6 -1.7 hypothetical protein compare
Atu4854 -0.6 -2.2 hypothetical protein compare
Atu2795 -0.6 -3.9 cobalamin biosynthetic protein compare
Atu1739 -0.6 -2.9 permease compare
Atu0469 -0.6 -2.7 hypothetical protein compare
Atu0063 -0.6 -2.4 ABC transporter, substrate binding protein (sugar) compare
Atu2650 -0.6 -3.6 glycerol-3-phosphate dehydrogenase compare
Atu0947 -0.6 -2.7 transcriptional regulator, AsnC family compare
Atu0093 -0.6 -2.3 Recombination protein compare
Atu4711 -0.6 -2.9 two component sensor kinase compare
Atu4753 -0.6 -2.4 amino acid ABC transporter permease compare
Atu5504 -0.6 -2.2 hypothetical protein compare
Atu4200 -0.6 -1.6 hypothetical protein compare
Atu5157 -0.6 -1.0 hypothetical protein compare
Atu8183 -0.6 -3.2 hypothetical protein compare
Atu8194 -0.6 -1.9 hypothetical protein compare
Atu0973 -0.6 -3.1 cycH protein compare
Atu2442 -0.5 -1.7 hypothetical protein compare
Atu1141 -0.5 -3.1 Phosphoribosylglycinamide synthetase compare
Atu1546 -0.5 -2.4 transcriptional regulator, MerR family compare
Atu1056 -0.5 -2.4 hypothetical protein compare
Atu8185 -0.5 -1.8 hypothetical protein compare
Atu2114 -0.5 -3.3 molecular chaperone, DnaJ family compare
Atu0280 -0.5 -0.9 hypothetical protein compare
Atu1518 -0.5 -1.6 transcriptional regulator, Fur family compare
Atu4857 -0.5 -2.7 mobilization protein C compare
Atu3011 -0.5 -1.8 ArsR family transcriptional regulator compare
Atu0460 -0.5 -2.7 hypothetical protein compare
Atu0454 -0.5 -2.9 hypothetical protein compare
Atu4889 -0.5 -2.5 hypothetical protein compare
Atu3578 -0.5 -2.3 glycerol-3-phosphate dehydrogenase compare
Atu5207 -0.5 -2.0 hypothetical protein compare
Atu4882 -0.5 -1.2 hypothetical protein compare
Atu1001 -0.5 -3.1 hypothetical protein compare
Atu4869 -0.5 -1.8 hypothetical protein compare
Atu0230 -0.5 -1.2 hypothetical protein compare
Atu0812 -0.5 -1.4 hypothetical protein compare
Atu3461 -0.5 -0.7 GntR family transcriptional regulator compare
Atu5489 -0.5 -1.3 hypothetical protein compare
Atu4884 -0.5 -1.8 hypothetical protein compare
Atu1892 -0.5 -1.3 hypothetical protein compare
Atu3763 -0.5 -0.9 hypothetical protein compare
Atu0463 -0.5 -1.8 hypothetical protein compare
Atu2790 -0.5 -1.2 3-isopropylmalate dehydratase, small subunit compare
Atu4514 -0.5 -1.3 RpiR family transcriptional regulator compare
Atu5424 -0.5 -3.4 oxidoreductase compare
Atu3834 -0.5 -2.2 hypothetical protein compare
Atu1445 -0.5 -2.5 two component sensor kinase compare
Atu1620 -0.5 -3.3 triosephosphate isomerase compare
Atu3798 -0.5 -2.3 TetR family transcriptional regulator compare
Atu6153 -0.5 -1.5 conserved hypothetical protein compare
Atu3017 -0.5 -0.9 phosphoglyceromutase compare
Atu0173 -0.5 -2.7 ABC transporter, substrate binding protein (phosphonate) compare
Atu5043 -0.5 -1.5 hypothetical protein compare
Atu0467 -0.5 -1.8 hypothetical protein compare
Atu3690 -0.5 -2.2 iron (III ABC transporter permease dicitrate ABC transporter permease compare
Atu8161 -0.5 -0.7 hypothetical protein compare
Atu0727 -0.5 -2.7 ferredoxin I compare
Atu3505 -0.5 -2.3 3-hydroxyisobutyryl-CoA hydrolase compare
Atu1818 -0.5 -0.7 hypothetical protein compare
Atu8128 -0.5 -2.5 putative bacteriophage P2 tail protein compare
Atu4144 -0.5 -0.7 hypothetical protein compare
Atu0038 -0.4 -2.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1851 -0.4 -1.4 BolA/YrbA family protein compare
Atu0295 -0.4 -1.0 hypothetical protein compare
Atu5088 -0.4 -0.9 hypothetical protein compare
Atu3485 -0.4 -2.8 short chain dehydrogenase compare
Atu3392 -0.4 -1.8 methyltransferase compare
Atu3012 -0.4 -0.8 hypothetical protein compare
Atu4567 -0.4 -2.4 ROK family transcriptional regulator compare
Atu5169 -0.4 -1.6 type IV secretion protein AvhB8 compare
Atu2436 -0.4 -1.5 hypothetical protein compare
Atu0185 -0.4 -1.4 methylglyoxal synthase compare
Atu0073 -0.4 -2.1 recF-like protein compare
Atu3033 -0.4 -2.7 hypothetical protein compare
Atu4108 -0.4 -2.1 ribonuclease D compare
Atu0637 -0.4 -3.0 proteinase sohB compare
Atu4866 -0.4 -2.0 hypothetical protein compare
Atu4346 -0.4 -1.7 hypothetical protein compare
Atu2789 -0.4 -1.2 hypothetical protein compare
Atu1242 -0.4 -2.7 cytochrome oxidase assembly factor compare
Atu8126 -0.4 -1.7 putative phage tail protein I compare
Atu1722 -0.4 -1.7 hypothetical protein compare
Atu4072 -0.4 -0.7 nodulation protein N compare
Atu8036 -0.4 -1.7 protein YBGT-like protein compare
Atu2548 -0.4 -3.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3480 -0.4 -2.0 hydroxymethylglutaryl-CoA lyase compare
Atu4873 -0.4 -1.9 TetR family transcriptional regulator compare
Atu0464 -0.4 -2.6 hypothetical protein compare
Atu5464 -0.4 -2.8 IclR family transcriptional regulator compare
Atu6125 -0.4 -1.6 conjugative transfer protein, Dtr system compare
Atu4502 -0.4 -2.3 cobalamin synthesis protein compare
Atu3593 -0.4 -2.3 hypothetical protein compare
Atu5455 -0.4 -1.4 hypothetical protein compare
Atu1364 -0.4 -1.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3365 -0.4 -2.1 hypothetical protein compare
Atu8127 -0.4 -3.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in r2a_control experiments