Experiment set4IT004 for Pseudomonas syringae pv. syringae B728a ΔmexB

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epiphytic; Lima bean

Group: in planta
Media: + epiphytic
Culturing: SyringaeB728a_mexBdelta_ML3
By: Tyler Helmann on 4/13/18

Specific Phenotypes

For 6 genes in this experiment

For in planta epiphytic in Pseudomonas syringae pv. syringae B728a ΔmexB

For in planta epiphytic across organisms

SEED Subsystems

Subsystem #Specific
Ammonia assimilation 2
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis 1
One-carbon metabolism by tetrahydropterines 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-glutamate biosynthesis I 2 2 2
L-glutamine degradation I 1 1 1
L-glutamine degradation II 1 1 1
ammonia assimilation cycle III 3 3 2
L-serine degradation 3 3 1
D-serine degradation 3 3 1
L-cysteine degradation II 3 2 1
L-methionine degradation II 3 2 1
L-tryptophan degradation II (via pyruvate) 3 2 1
L-glutamate and L-glutamine biosynthesis 7 5 2
formaldehyde oxidation VII (THF pathway) 4 4 1
L-asparagine biosynthesis III (tRNA-dependent) 4 4 1
glutaminyl-tRNAgln biosynthesis via transamidation 4 3 1
felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis 5 2 1
L-methionine biosynthesis II 6 5 1
L-threonine degradation I 6 4 1
L-isoleucine biosynthesis I (from threonine) 7 7 1
glycine betaine degradation III 7 7 1
L-citrulline biosynthesis 8 7 1
glycine betaine degradation I 8 6 1
L-mimosine degradation 8 4 1
glutathione-mediated detoxification I 8 3 1
superpathway of L-citrulline metabolism 12 9 1
purine nucleobases degradation II (anaerobic) 24 16 2
superpathway of L-isoleucine biosynthesis I 13 13 1
folate transformations I 13 9 1
hypoglycin biosynthesis 14 4 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 13 1
purine nucleobases degradation I (anaerobic) 15 6 1
superpathway of branched chain amino acid biosynthesis 17 17 1
superpathway of L-threonine metabolism 18 11 1