Experiment set4IT004 for Pseudomonas putida KT2440

Compare to:

LB with limonene 10 vol%

200 most important genes:

  gene name fitness t score description  
PP_0393 -2.9 -3.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0719 -2.2 -2.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1733 -2.1 -3.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_1783 -1.7 -2.3 dTDP-glucose pyrophosphorylase compare
PP_3105 -1.7 -3.5 conserved membrane protein of unknown function compare
PP_0833 -1.6 -2.3 queuine tRNA-ribosyltransferase compare
PP_2000 -1.6 -3.4 amidophosphoribosyl transferase compare
PP_4126 -1.6 -2.0 NADH-quinone oxidoreductase subunit I compare
PP_1994 -1.5 -2.4 tRNA pseudouridine (38-40)synthase compare
PP_3365 -1.5 -1.9 Acetolactate synthase compare
PP_4724 -1.5 -4.7 Carbamoyl-phosphate synthase small chain compare
PP_2402 -1.4 -2.8 putative Sensor histidine kinase compare
PP_4880 -1.4 -6.4 exoribonuclease R compare
PP_5706 -1.4 -2.3 Sec translocation complex - SecG subunit compare
PP_0856 -1.3 -3.3 conserved lipoprotein of unknown function compare
PP_2378 -1.3 -2.4 Fe/S biogenesis protein NfuA compare
PP_1428 -1.3 -2.9 Sigma factor AlgU negative regulatory protein compare
PP_5017 -1.2 -1.8 Sec-independent protein translocase protein TatB compare
PP_5095 -1.2 -1.4 pyrroline-5-carboxylate reductase compare
PP_5090 -1.2 -2.4 putative cell division protein compare
PP_0872 -1.2 -5.1 Peptide chain release factor 3 compare
PP_4964 -1.2 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_4989 -1.2 -3.5 Protein PilJ compare
PP_1468 -1.2 -1.5 Tyrosine recombinase XerD compare
PP_3946 -1.2 -1.5 HTH-type transcriptional repressor NicR compare
PP_0691 -1.2 -2.6 Glutamate 5-kinase compare
PP_4723 -1.2 -6.5 Carbamoyl-phosphate synthase large chain compare
PP_4999 -1.2 -1.6 dihydroorotase-like protein compare
PP_3392 -1.1 -2.3 conserved protein of unknown function compare
PP_4937 -1.1 -2.9 toluene tolerance protein compare
PP_4787 -1.1 -2.2 putative protein with nucleoside triphosphate hydrolase domain compare
PP_3519 -1.1 -1.5 putative Lipoprotein compare
PP_1099 -1.1 -2.2 Cold shock protein CapB compare
PP_4342 -1.1 -2.9 flagellar synthesis regulator, putative ATPase compare
PP_3971 -1.1 -2.1 conserved protein of unknown function compare
PP_4836 -1.1 -2.8 conserved exported protein of unknown function compare
PP_5328 -1.1 -2.6 putative phosphate transport system permease protein compare
PP_1122 -1.0 -1.8 OmpA family protein compare
PP_4722 -1.0 -2.9 Transcription elongation factor GreA compare
PP_5329 -1.0 -3.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5609 -1.0 -3.0 conserved protein of unknown function compare
PP_0435 -1.0 -7.0 Peptidase, M23/M37 family compare
PP_4129 -1.0 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2459 -1.0 -2.3 ribose pyranase compare
PP_4726 -0.9 -2.2 Chaperone protein DnaJ compare
PP_1328 -0.9 -2.4 Protein MraZ compare
PP_5717 -0.9 -2.3 conserved protein of unknown function compare
PP_2337 -0.9 -2.2 aconitate isomerase compare
PP_0962 -0.9 -2.2 toluene-tolerance protein compare
PP_4993 -0.9 -2.6 Glutathione synthetase compare
PP_0001 -0.9 -1.0 probable chromosome-partitioning protein compare
PP_2031 -0.9 -2.1 conserved protein of unknown function compare
PP_1269 -0.9 -1.1 Universal stress protein family compare
PP_4957 -0.9 -3.6 conserved protein of unknown function compare
PP_3541 -0.9 -2.6 Transporter, MgtC family compare
PP_0339 -0.9 -2.9 Pyruvate dehydrogenase E1 component compare
PP_5597 -0.9 -2.4 conserved protein of unknown function compare
PP_5569 -0.8 -2.8 protein of unknown function of phage origin compare
PP_4251 -0.8 -3.3 cytochrome c oxidase subunit, cbb3-type compare
PP_4121 -0.8 -3.2 NADH-quinone oxidoreductase subunit C/D compare
PP_1176 -0.8 -2.0 conserved protein of unknown function compare
PP_1310 -0.8 -2.7 conserved hypothetical protein compare
PP_4707 -0.8 -2.3 OsmY-related protein compare
PP_1568 -0.8 -1.2 conserved protein of unknown function compare
PP_5327 -0.8 -3.4 putative phosphate ABC transporter, permease subunit compare
PP_5571 -0.8 -1.2 conserved protein of unknown function compare
PP_2336 -0.8 -2.7 aconitate hydratase 1 compare
PP_5491 -0.8 -1.2 conserved protein of unknown function with SEC-C motif domain compare
PP_0775 -0.8 -1.8 conserved protein of unknown function compare
PP_1658 -0.8 -2.5 conserved protein of unknown function compare
PP_2302 -0.8 -3.2 DNA-binding, ATP-dependent protease compare
PP_0232 -0.8 -1.2 ATP-binding taurine transporter subunit compare
PP_5594 -0.8 -1.8 conserved protein of unknown function compare
PP_1319 -0.8 -3.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_3649 -0.8 -2.3 Transcriptional regulator, GntR family compare
PP_1987 -0.8 -1.6 Methlytransferase, UbiE/COQ5 family compare
PP_2550 -0.8 -1.8 putative transcriptional regulatory protein compare
PP_1646 -0.8 -2.9 putative Thioredoxin compare
PP_4004 -0.8 -2.0 DNA translocase FtsK compare
PP_1217 -0.7 -2.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5309 -0.7 -3.3 oxidative and nitrosative stress transcriptional dual regulator compare
PP_5583 -0.7 -1.3 conserved protein of unknown function compare
PP_2307 -0.7 -1.4 conserved protein of unknown function compare
PP_t29 -0.7 -1.4 tRNA-Ala compare
PP_1489 -0.7 -2.0 CheW domain protein compare
PP_1265 -0.7 -2.6 conserved protein of unknown function compare
PP_1774 -0.7 -2.1 conserved exported protein of unknown function compare
PP_4253 -0.7 -2.6 cytochrome c oxidase subunit, cbb3-type compare
PP_1268 -0.7 -2.1 putative HtrA suppressor protein sohA compare
PP_4556 -0.7 -2.0 conserved protein of unknown function compare
PP_3110 -0.7 -1.8 protein of unknown function compare
PP_2878 -0.7 -2.0 conserved protein of unknown function compare
PP_0167 -0.7 -5.8 Toxin secretion ATP-binding protein compare
PP_5528 -0.7 -1.4 conserved protein of unknown function compare
PP_2976 -0.7 -1.3 putative transposase compare
PP_4700 -0.7 -0.5 pantothenate synthetase compare
PP_5483 -0.7 -1.7 conserved protein of unknown function compare
PP_1860 -0.7 -3.3 Organic hydroperoxide resistance transcriptional regulator compare
PP_3580 -0.7 -1.3 conserved protein of unknown function compare
PP_3637 -0.7 -1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5525 -0.7 -1.9 conserved exported protein of unknown function compare
PP_1632 -0.7 -1.3 conserved protein of unknown function compare
PP_0025 -0.7 -1.1 hypothetical protein compare
PP_3625 -0.7 -2.9 Transporter, LysE family compare
PP_1153 -0.7 -2.4 putative lipoprotein compare
PP_0126 -0.7 -1.8 Cytochrome c4 compare
PP_2054 -0.7 -2.3 putative DNA-binding transcriptional regulator compare
PP_5453 -0.7 -1.5 conserved protein of unknown function compare
PP_0165 -0.7 -5.6 GGDEF domain protein compare
PP_0959 -0.7 -1.2 phospholipid ABC transporter compare
PP_0960 -0.7 -3.1 phospholipid ABC transporter binding protein compare
PP_5705 -0.7 -1.1 protein of unknown function compare
PP_2379 -0.7 -3.0 putative cytochrome oxidase biogenesis protein compare
PP_4902 -0.7 -1.5 Oligoribonuclease compare
PP_4804 -0.7 -1.9 RlpA-like lipoprotein compare
PP_2356 -0.7 -4.2 putative Phytochrome family protein compare
PP_4835 -0.7 -1.7 conserved exported protein of unknown function compare
PP_2103 -0.7 -1.7 conserved protein of unknown function compare
PP_0111 -0.7 -3.7 Electron transport protein SCO1/SenC compare
PP_3100 -0.6 -2.9 conserved protein of unknown function compare
PP_2160 -0.6 -2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_t64 -0.6 -2.5 tRNA-Gly compare
PP_3891 -0.6 -2.1 conserved protein of unknown function compare
PP_3102 -0.6 -2.3 conserved protein of unknown function compare
PP_5505 -0.6 -2.1 conserved transmembrane protein of unknown function compare
PP_5331 -0.6 -2.8 Long-chain acyl-CoA thioester hydrolase compare
PP_1045 -0.6 -1.4 Type II secretion pathway protein XcpP compare
PP_2429 -0.6 -1.1 putative Membrane protein compare
PP_1068 -0.6 -2.5 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_1736 -0.6 -2.2 conserved protein of unknown function compare
PP_4131 -0.6 -2.7 NADH-quinone oxidoreductase subunit N compare
PP_1764 -0.6 -2.5 Phosphoglycolate phosphatase 2 compare
PP_2593 -0.6 -3.1 Ferric siderophore ABC transporter, permease protein compare
PP_1494 -0.6 -2.9 Response regulator/GGDEF domain protein compare
PP_2625 -0.6 -2.4 conserved exported protein of unknown function compare
PP_4249 -0.6 -2.7 conserved protein of unknown function compare
PP_4426 -0.6 -2.3 Amino acid ABC transporter, permease protein compare
PP_2616 -0.6 -2.2 conserved protein of unknown function compare
PP_2475 -0.6 -1.9 Transcriptional regulator, TetR family compare
PP_5701 -0.6 -1.4 conserved protein of unknown function compare
PP_1898 -0.6 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4826 -0.6 -3.1 Precorrin-3B C17-methyltransferase compare
PP_0888 -0.6 -1.2 Photosynthetic apparatus regulatory protein RegA compare
PP_2510 -0.6 -1.4 conserved protein of unknown function compare
PP_5551 -0.6 -2.8 conserved protein of unknown function compare
PP_5217 -0.6 -4.5 Polyphosphate kinase compare
PP_1020 -0.6 -1.4 putative glucose-6-phosphate 1-epimerase compare
PP_4519 -0.6 -4.1 Agglutination protein compare
PP_1673 -0.6 -2.3 cobyrinate a,c-diamide synthase compare
PP_1317 -0.6 -2.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0054 -0.6 -2.8 conserved membrane protein of unknown function compare
PP_1734 -0.6 -1.4 Probable septum site-determining protein MinC compare
PP_4546 -0.6 -1.7 ATP-dependent helicase HrpA compare
PP_4545 -0.6 -2.1 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_2748 -0.6 -1.9 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_1078 -0.6 -3.3 putative ABC transporter, ATP-binding protein compare
PP_4373 -0.6 -3.4 Transcriptional regulator FleQ compare
PP_2547 -0.6 -2.1 Transcriptional regulator, LysR family compare
PP_2932 -0.6 -3.3 Amidase family protein compare
PP_1692 -0.6 -1.2 conserved protein of unknown function compare
PP_0787 -0.6 -1.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5198 -0.6 -1.8 conserved protein of unknown function compare
PP_4311 -0.6 -2.7 putative D-amino acid dehydrogenase 2 small subunit compare
PP_1756 -0.5 -2.7 conserved exported protein of unknown function compare
PP_2360 -0.5 -2.3 putative type 1 pili subunit CsuA/B protein compare
PP_5146 -0.5 -3.3 RNA pyrophosphohydrolase compare
PP_0677 -0.5 -1.9 putative Lipoprotein compare
PP_0672 -0.5 -4.2 Sensory box protein compare
PP_4122 -0.5 -0.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5535 -0.5 -2.4 conserved membrane protein of unknown function compare
PP_3802 -0.5 -2.3 putative Cation ABC transporter, ATP-binding protein compare
PP_1384 -0.5 -3.6 Probable efflux pump outer membrane protein TtgC compare
PP_3614 -0.5 -1.3 conserved membrane protein of unknown function compare
PP_3766 -0.5 -1.2 Lactoylglutathione lyase compare
PP_2511 -0.5 -1.8 conserved protein of unknown function compare
PP_3505 -0.5 -1.0 conserved protein of unknown function compare
PP_0168 -0.5 -4.7 putative surface adhesion protein compare
PP_5612 -0.5 -2.3 protein of unknown function compare
PP_5338 -0.5 -1.3 aspartate ammonia-lyase compare
PP_3506 -0.5 -2.0 Magnesium chelatase, subunit ChII compare
PP_4120 -0.5 -1.1 NADH-quinone oxidoreductase subunit B compare
PP_1571 -0.5 -1.9 conserved protein of unknown function compare
PP_3043 -0.5 -1.1 conserved protein of unknown function compare
PP_0832 -0.5 -1.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5143 -0.5 -1.9 conserved membrane protein of unknown function compare
PP_5028 -0.5 -1.8 proline iminopeptidase compare
PP_2520 -0.5 -1.2 conserved protein of unknown function compare
PP_4838 -0.5 -4.0 Outer membrane copper receptor OprC compare
PP_5279 -0.5 -1.3 conserved protein of unknown function compare
PP_4591 -0.5 -2.0 Ribonuclease D compare
PP_4811 -0.5 -1.4 Gamma-glutamyl phosphate reductase compare
PP_5603 -0.5 -2.0 putative FAD dependent oxidoreductase compare
PP_5337 -0.5 -2.1 LysR family transcriptional regulator compare
PP_3732 -0.5 -2.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_5557 -0.5 -1.4 protein of unknown function compare
PP_2800 -0.5 -2.1 putative Diaminobutyrate-2-oxoglutarate transaminase compare
PP_4917 -0.5 -1.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4961 -0.5 -1.0 putative Lipoprotein compare
PP_4260 -0.5 -2.0 conserved protein of unknown function compare
PP_0166 -0.5 -3.7 HlyD family secretion protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress limonene across organisms