Experiment set4IT003 for Pseudomonas syringae pv. syringae B728a ΔmexB
epiphytic; Lima bean
Group: in plantaMedia: + epiphytic
Culturing: SyringaeB728a_mexBdelta_ML3
By: Tyler Helmann on 4/13/18
Specific Phenotypes
For 5 genes in this experiment
For in planta epiphytic in Pseudomonas syringae pv. syringae B728a ΔmexB
For in planta epiphytic across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Ammonia assimilation | 3 |
| Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis | 2 |
| One-carbon metabolism by tetrahydropterines | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glutamate metabolism
- Nitrogen metabolism
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Glyoxylate and dicarboxylate metabolism
- One carbon pool by folate
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-glutamate biosynthesis I | 2 | 2 | 2 |
| L-glutamate biosynthesis IV | 1 | 1 | 1 |
| L-glutamine degradation II | 1 | 1 | 1 |
| L-glutamate biosynthesis III | 1 | 1 | 1 |
| L-glutamine degradation I | 1 | 1 | 1 |
| ammonia assimilation cycle III | 3 | 3 | 2 |
| L-glutamate and L-glutamine biosynthesis | 7 | 5 | 4 |
| ammonia assimilation cycle I | 2 | 2 | 1 |
| superpathway of ammonia assimilation (plants) | 3 | 2 | 1 |
| L-asparagine biosynthesis III (tRNA-dependent) | 4 | 4 | 1 |
| formaldehyde oxidation VII (THF pathway) | 4 | 4 | 1 |
| glutaminyl-tRNAgln biosynthesis via transamidation | 4 | 3 | 1 |
| L-citrulline biosynthesis | 8 | 7 | 1 |
| superpathway of L-citrulline metabolism | 12 | 9 | 1 |
| folate transformations I | 13 | 9 | 1 |
| purine nucleobases degradation I (anaerobic) | 15 | 6 | 1 |
| purine nucleobases degradation II (anaerobic) | 24 | 16 | 1 |