Experiment set4IT003 for Agrobacterium fabrum C58

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
Atu0184 -2.8 -3.6 glucokinase compare
Atu0400 -2.8 -5.0 orotate phosphoribosyltransferase compare
Atu5115 -2.8 -2.2 hypothetical protein compare
Atu1688 -2.7 -4.1 indole-3-glycerol-phosphate synthase compare
Atu2439 -2.6 -2.0 hypothetical protein compare
Atu0399 -2.4 -6.7 dihydroorotase compare
Atu1687 -2.2 -6.9 anthranilate phosphoribosyltransferase compare
Atu1307 -2.1 -7.6 dihydroorotase compare
Atu0017 -2.0 -2.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2289 -1.9 -9.2 anthranilate synthase component I and II compare
Atu0115 -1.9 -1.5 hypothetical protein compare
Atu3469 -1.9 -2.5 phosphoglyceromutase compare
Atu3120 -1.8 -1.0 hypothetical protein compare
Atu2728 -1.8 -6.1 beta (1-->2) glucan export ATP-binding protein compare
Atu0346 -1.8 -2.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0486 -1.7 -6.5 dihydroorotate dehydrogenase compare
Atu0298 -1.7 -7.1 orotidine 5 compare
Atu0031 -1.6 -2.1 PTS system, IIA component compare
Atu6165 -1.6 -1.1 hypothetical protein compare
Atu2193 -1.5 -1.4 hypothetical protein compare
Atu0188 -1.5 -3.6 ABC transporter, membrane spanning protein (peptide) compare
Atu2710 -1.5 -7.4 hypothetical protein compare
Atu0039 -1.5 -2.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1308 -1.5 -3.6 aspartate carbamoyl transferase catalytic subunit compare
Atu0723 -1.4 -2.2 FAD dependent oxidoreductase compare
Atu1446 -1.4 -2.4 two component response regulator compare
Atu2684 -1.3 -1.0 hypothetical protein compare
Atu0141 -1.3 -1.4 cytochrome O ubiquinol oxidase subunit I compare
Atu1891 -1.3 -3.4 cobalamin biosynthesis protein compare
Atu0103 -1.3 -6.8 penicillin-binding protein compare
Atu0189 -1.2 -3.7 ABC transporter, membrane spanning protein (peptide) compare
Atu1686 -1.2 -6.6 peptidyl-prolyl cis-trans isomerse D compare
Atu3468 -1.2 -1.1 hypothetical protein compare
Atu3598 -1.2 -1.3 thiol:disulfide interchange protein compare
Atu0647 -1.2 -3.9 phosphoribosylamine--glycine ligase compare
Atu0354 -1.2 -2.5 ferric uptake regulator compare
Atu0434 -1.2 -1.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1845 -1.2 -4.1 phosphoribosylformylglycinamidine synthase I compare
Atu3634 -1.2 -4.6 penicillin-binding protein dacf precursor compare
Atu6189 -1.1 -1.1 protein secretion chaperone compare
Atu2800 -1.1 -2.7 precorrin-3B C17-methyltransferase compare
Atu1028 -1.1 -2.9 hypothetical protein compare
Atu1844 -1.1 -1.7 Phosphoribosylformylglycinamidine synthetase compare
Atu1359 -1.1 -1.1 dnaK deletion suppressor protein compare
Atu0422 -1.1 -1.4 ABC transporter, membrane spanning protein compare
Atu4418 -1.1 -2.5 glutaryl-CoA dehydrogenase compare
Atu4896 -1.0 -2.3 acetyltransferase compare
Atu2662 -1.0 -1.6 acetyltransferase compare
Atu1075 -1.0 -3.3 amidophosphoribosyltransferase compare
Atu0972 -1.0 -4.5 lipA protein compare
Atu0190 -1.0 -5.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3730 -1.0 -1.1 hypothetical protein compare
Atu2484 -1.0 -1.8 hypothetical protein compare
Atu0361 -1.0 -2.2 transcriptional regulator compare
Atu1141 -1.0 -2.1 Phosphoribosylglycinamide synthetase compare
Atu1588 -1.0 -5.0 homoserine dehydrogenase compare
Atu0025 -1.0 -1.5 hypothetical protein compare
Atu0598 -1.0 -5.4 phosphogluconate dehydratase compare
Atu2640 -0.9 -3.3 hypothetical protein compare
Atu2464 -0.9 -2.3 formyltetrahydrofolate deformylase compare
Atu0640 -0.9 -0.9 hypothetical protein compare
Atu0419 -0.9 -1.7 two component sensor kinase compare
Atu0762 -0.9 -2.3 hypothetical protein compare
Atu0777 -0.9 -0.8 hypothetical protein compare
Atu5164 -0.9 -0.8 type IV secretion protein AvhB3 compare
Atu0809 -0.9 -1.5 hypothetical protein compare
Atu0986 -0.9 -1.3 hypothetical protein compare
Atu1850 -0.9 -2.0 phosphoribosylformylglycinamidine synthetase II compare
Atu2692 -0.9 -2.7 intracellular septation protein compare
Atu0886 -0.9 -1.5 hypothetical protein compare
Atu3483 -0.9 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1774 -0.8 -3.6 ABC transporter, substrate binding protein (peptide) compare
Atu2442 -0.8 -1.6 hypothetical protein compare
Atu0883 -0.8 -1.3 hypothetical protein compare
Atu2805 -0.8 -2.7 cobalamin synthesis protein compare
Atu4869 -0.8 -2.7 hypothetical protein compare
Atu2207 -0.8 -2.5 two component sensor kinase compare
Atu0690 -0.8 -1.4 hypothetical protein compare
Atu0093 -0.7 -2.5 Recombination protein compare
Atu0971 -0.7 -2.7 two component sensor kinase compare
Atu0977 -0.7 -2.5 serine protease DO-like protease compare
Atu1110 -0.7 -2.3 cytosol aminopeptidase compare
Atu0401 -0.7 -3.0 fructokinase compare
Atu3754 -0.7 -3.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2057 -0.7 -1.3 DNA helicase II compare
Atu1387 -0.7 -1.9 transcriptional regulator, GntR family compare
Atu0769 -0.7 -1.1 protoheme IX farnesyltransferase compare
Atu3481 -0.7 -2.2 enoyl-CoA hydratase compare
Atu1163 -0.7 -1.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4317 -0.7 -1.6 TetR family transcriptional regulator compare
Atu4075 -0.7 -2.2 glycogen synthase compare
Atu2683 -0.7 -1.2 hypothetical protein compare
Atu2036 -0.7 -4.5 acetolactate synthase III, large subunit compare
Atu1140 -0.7 -2.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2248 -0.7 -1.4 hypothetical protein compare
Atu1628 -0.7 -1.5 hypothetical protein compare
Atu2799 -0.7 -2.2 precorrin-6x reductase compare
Atu1470 -0.7 -0.8 Camphor resistance protein compare
Atu8194 -0.7 -2.5 hypothetical protein compare
Atu2801 -0.7 -2.3 precorrin-2 C20 methyltransferase compare
Atu4825 -0.7 -3.8 dehydrogenase compare
Atu4852 -0.6 -3.1 hypothetical protein compare
Atu1354 -0.6 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0460 -0.6 -2.7 hypothetical protein compare
Atu0331 -0.6 -2.3 sigma-54 modulation protein compare
Atu4857 -0.6 -2.5 mobilization protein C compare
Atu3510 -0.6 -2.1 amidohydrolase compare
Atu0041 -0.6 -0.8 glutamine amidotransferase compare
Atu0463 -0.6 -2.4 hypothetical protein compare
Atu2808 -0.6 -2.6 cobyric acid synthase compare
Atu4217 -0.6 -0.8 TetR family transcriptional regulator compare
Atu3727 -0.6 -2.0 hypothetical protein compare
Atu1853 -0.6 -2.0 hypothetical protein compare
Atu2130 -0.6 -2.5 hypothetical protein compare
Atu0149 -0.6 -1.8 enoyl-(acyl-carrier-protein) reductase compare
Atu0454 -0.6 -2.6 hypothetical protein compare
Atu1475 -0.6 -1.8 hypothetical protein compare
Atu2083 -0.6 -1.3 DNA repair protein RecN compare
Atu2804 -0.6 -3.7 cobaltochelatase subunit compare
Atu4711 -0.6 -2.8 two component sensor kinase compare
Atu8183 -0.6 -2.3 hypothetical protein compare
Atu2807 -0.6 -2.4 cob(I)alamin adenosyltransferase compare
Atu0535 -0.6 -2.6 hypothetical protein compare
Atu5485 -0.6 -1.6 hypothetical protein compare
Atu4840 -0.6 -1.7 hypothetical protein compare
Atu8063 -0.6 -1.4 hypothetical protein compare
Atu1737 -0.6 -1.1 hypothetical protein compare
Atu1062 -0.6 -1.2 phosphatidylserine synthase compare
Atu3014 -0.6 -1.5 hypothetical protein compare
Atu8019 -0.6 -2.0 hypothetical protein compare
Atu3706 -0.6 -2.4 D-3-phosphoglycerate dehydrogenase compare
Atu1620 -0.6 -3.3 triosephosphate isomerase compare
Atu1542 -0.6 -1.9 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2040 -0.5 -2.3 phosphoserine phosphatase compare
Atu8138 -0.5 -1.0 hypothetical protein compare
Atu6197 -0.5 -1.9 agrocinopine phosphodiesterase compare
Atu2798 -0.5 -1.9 precorrin-6y methyltransferase compare
Atu3040 -0.5 -3.3 hypothetical protein compare
Atu4137 -0.5 -1.7 hypothetical protein compare
Atu5493 -0.5 -1.8 hypothetical protein compare
Atu0038 -0.5 -2.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1638 -0.5 -1.9 hypothetical protein compare
Atu8087 -0.5 -0.4 putative peptidoglycan binding protein compare
Atu4866 -0.5 -3.8 hypothetical protein compare
Atu0026 -0.5 -0.6 hypothetical protein compare
Atu2650 -0.5 -3.4 glycerol-3-phosphate dehydrogenase compare
Atu8035 -0.5 -0.8 hypothetical protein compare
Atu4854 -0.5 -2.3 hypothetical protein compare
Atu0464 -0.5 -3.2 hypothetical protein compare
Atu2146 -0.5 -1.7 hypothetical protein compare
Atu4865 -0.5 -2.9 oxidoreductase compare
Atu3064 -0.5 -2.1 ABC transporter permease compare
Atu8082 -0.5 -1.3 hypothetical protein compare
Atu6039 -0.5 -1.6 conjugal transfer protein compare
Atu1364 -0.5 -2.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3750 -0.5 -1.7 thiamine-phosphate pyrophosphorylase compare
Atu2766 -0.5 -4.2 NAD-glutamate dehydrogenase compare
Atu2073 -0.5 -1.4 membrane protein compare
Atu2733 -0.5 -1.5 hypothetical protein compare
Atu2616 -0.5 -3.4 hypothetical protein compare
Atu3066 -0.5 -2.7 resiniferatoxin-binding, phosphotriesterase-like protein compare
Atu0976 -0.5 -1.3 cycL protein compare
Atu4839 -0.5 -2.7 C factor compare
Atu1851 -0.5 -1.5 BolA/YrbA family protein compare
Atu1782 -0.5 -1.4 hypothetical protein compare
Atu3755 -0.5 -2.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2809 -0.5 -2.5 cobalamin biosynthesis protein compare
Atu3780 -0.5 -2.4 hypothetical protein compare
Atu1468 -0.5 -2.9 hypothetical protein compare
Atu2803 -0.5 -1.6 Cobalamin biosynthesis associated protein compare
Atu3039 -0.5 -3.2 hydantoinase beta subunit-like protein compare
Atu5464 -0.5 -2.6 IclR family transcriptional regulator compare
Atu5061 -0.5 -1.8 glycerophosphoryl diester phosphodiesterase compare
Atu2113 -0.5 -1.7 N-acetylmuramoyl-L-alanine amidase compare
Atu0966 -0.5 -1.5 hypothetical protein compare
Atu4148 -0.5 -1.8 UDP-glucuronic acid epimerase compare
Atu4878 -0.5 -1.6 hypothetical protein compare
Atu4872 -0.5 -2.9 LysR family transcriptional regulator compare
Atu4161 -0.5 -1.0 hypothetical protein compare
Atu0726 -0.5 -3.0 ring hydroxylating dioxygenase, alpha-subunit compare
Atu4835 -0.5 -2.9 glucose-6-phosphate 1-dehydrogenase compare
Atu2495 -0.5 -1.7 flavoprotein oxidoreductase compare
Atu4887 -0.5 -1.7 hypothetical protein compare
Atu0406 -0.5 -2.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu3013 -0.5 -1.8 hypothetical protein compare
Atu1709 -0.5 -2.1 glycosyl hydrolase compare
Atu4889 -0.5 -2.1 hypothetical protein compare
Atu1970 -0.5 -1.6 hypothetical protein compare
Atu2191 -0.5 -1.6 transcriptional regulator, LysR family compare
Atu3045 -0.5 -2.2 hypothetical protein compare
Atu5160 -0.5 -1.3 transcriptional regulator protein compare
Atu4859 -0.5 -2.8 hypothetical protein compare
Atu3593 -0.5 -2.8 hypothetical protein compare
Atu2234 -0.5 -0.9 hypothetical protein compare
Atu2489 -0.5 -2.3 hypothetical protein compare
Atu5107 -0.5 -1.4 hypothetical protein compare
Atu0119 -0.5 -0.7 hypothetical protein compare
Atu0319 -0.5 -0.6 ubiquinone biosynthesis protein compare
Atu3042 -0.5 -2.5 hypothetical protein compare
Atu4108 -0.5 -2.6 ribonuclease D compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in r2a_control experiments