Experiment set4IT001 for Agrobacterium fabrum C58

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
Atu0346 -2.9 -4.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1687 -2.9 -7.7 anthranilate phosphoribosyltransferase compare
Atu2684 -2.9 -2.3 hypothetical protein compare
Atu1028 -2.3 -3.7 hypothetical protein compare
Atu0399 -2.2 -5.4 dihydroorotase compare
Atu1307 -2.1 -4.6 dihydroorotase compare
Atu0486 -2.0 -5.4 dihydroorotate dehydrogenase compare
Atu0298 -2.0 -6.1 orotidine 5 compare
Atu0723 -1.9 -2.9 FAD dependent oxidoreductase compare
Atu1308 -1.9 -3.5 aspartate carbamoyl transferase catalytic subunit compare
Atu2289 -1.8 -8.8 anthranilate synthase component I and II compare
Atu1688 -1.8 -4.5 indole-3-glycerol-phosphate synthase compare
Atu0400 -1.7 -4.0 orotate phosphoribosyltransferase compare
Atu3009 -1.6 -1.6 exopolysaccharide production protein compare
Atu1685 -1.5 -1.3 hypothetical protein compare
Atu5142 -1.5 -2.3 hypothetical protein compare
Atu2728 -1.4 -4.8 beta (1-->2) glucan export ATP-binding protein compare
Atu0017 -1.4 -1.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2710 -1.4 -7.2 hypothetical protein compare
Atu1686 -1.3 -6.5 peptidyl-prolyl cis-trans isomerse D compare
Atu0189 -1.2 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu0188 -1.2 -4.0 ABC transporter, membrane spanning protein (peptide) compare
Atu8029 -1.2 -1.7 hypothetical protein compare
Atu0103 -1.2 -6.9 penicillin-binding protein compare
Atu0190 -1.1 -4.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1845 -1.1 -4.1 phosphoribosylformylglycinamidine synthase I compare
Atu0361 -1.1 -3.0 transcriptional regulator compare
Atu6036 -1.1 -1.1 entry-exclusion protein compare
Atu0031 -1.1 -1.7 PTS system, IIA component compare
Atu1774 -1.1 -4.9 ABC transporter, substrate binding protein (peptide) compare
Atu1030 -1.0 -1.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1891 -1.0 -3.5 cobalamin biosynthesis protein compare
Atu1844 -1.0 -2.1 Phosphoribosylformylglycinamidine synthetase compare
Atu4773 -1.0 -1.6 two component response regulator compare
Atu0647 -1.0 -4.3 phosphoribosylamine--glycine ligase compare
Atu1359 -1.0 -1.0 dnaK deletion suppressor protein compare
Atu0025 -0.9 -1.4 hypothetical protein compare
Atu0912 -0.9 -1.3 Na+/H+ antiporter compare
Atu0421 -0.9 -1.4 ABC transporter, membrane spanning protein compare
Atu4075 -0.9 -3.6 glycogen synthase compare
Atu3755 -0.9 -2.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1850 -0.9 -2.6 phosphoribosylformylglycinamidine synthetase II compare
Atu3014 -0.9 -2.1 hypothetical protein compare
Atu2692 -0.9 -3.1 intracellular septation protein compare
Atu3754 -0.9 -4.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1163 -0.9 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0535 -0.9 -2.7 hypothetical protein compare
Atu0977 -0.9 -3.0 serine protease DO-like protease compare
Atu8053 -0.9 -2.3 hypothetical protein compare
Atu3634 -0.8 -3.5 penicillin-binding protein dacf precursor compare
Atu0972 -0.8 -3.4 lipA protein compare
Atu2113 -0.8 -1.6 N-acetylmuramoyl-L-alanine amidase compare
Atu1677 -0.8 -2.8 queuine tRNA-ribosyltransferase compare
Atu0185 -0.8 -2.8 methylglyoxal synthase compare
Atu3013 -0.8 -3.7 hypothetical protein compare
Atu1503 -0.8 -0.9 hypothetical protein compare
Atu0040 -0.8 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2040 -0.8 -3.0 phosphoserine phosphatase compare
Atu1542 -0.8 -2.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2207 -0.8 -2.2 two component sensor kinase compare
Atu0434 -0.8 -2.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3727 -0.8 -3.4 hypothetical protein compare
Atu3999 -0.8 -1.8 dithiobiotin synthetase compare
Atu4144 -0.7 -1.0 hypothetical protein compare
Atu0340 -0.7 -1.1 SAM dependent methyltransferase compare
Atu0115 -0.7 -0.8 hypothetical protein compare
Atu0354 -0.7 -1.2 ferric uptake regulator compare
Atu1184 -0.7 -2.0 hypothetical protein compare
Atu4223 -0.7 -1.5 sarcosine oxidase delta subunit compare
Atu1667 -0.7 -1.1 hypothetical protein compare
Atu3044 -0.7 -2.3 asparaginase compare
Atu3031 -0.7 -1.1 hypothetical protein compare
Atu8062 -0.7 -4.0 hypothetical protein compare
Atu3469 -0.7 -1.0 phosphoglyceromutase compare
Atu1140 -0.7 -3.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2733 -0.7 -2.6 hypothetical protein compare
Atu0295 -0.7 -1.9 hypothetical protein compare
Atu8183 -0.7 -2.8 hypothetical protein compare
Atu2807 -0.7 -3.0 cob(I)alamin adenosyltransferase compare
Atu2809 -0.7 -3.2 cobalamin biosynthesis protein compare
Atu4873 -0.7 -3.4 TetR family transcriptional regulator compare
Atu3510 -0.7 -1.6 amidohydrolase compare
Atu0769 -0.7 -1.3 protoheme IX farnesyltransferase compare
Atu8023 -0.7 -1.3 hypothetical protein compare
Atu0419 -0.7 -1.9 two component sensor kinase compare
Atu0141 -0.6 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu0464 -0.6 -3.6 hypothetical protein compare
Atu2036 -0.6 -4.9 acetolactate synthase III, large subunit compare
Atu3759 -0.6 -1.1 hypothetical protein compare
Atu1874 -0.6 -1.3 RecA protein compare
Atu0598 -0.6 -3.5 phosphogluconate dehydratase compare
Atu1141 -0.6 -2.2 Phosphoribosylglycinamide synthetase compare
Atu3045 -0.6 -1.9 hypothetical protein compare
Atu4896 -0.6 -1.6 acetyltransferase compare
Atu4418 -0.6 -2.3 glutaryl-CoA dehydrogenase compare
Atu4567 -0.6 -3.0 ROK family transcriptional regulator compare
Atu0690 -0.6 -1.1 hypothetical protein compare
Atu2796 -0.6 -2.7 precorrin-4 C11-methyltransferase compare
Atu6114 -0.6 -1.7 hypothetical protein compare
Atu1077 -0.6 -1.9 DNA repair protein compare
Atu2193 -0.6 -0.8 hypothetical protein compare
Atu1075 -0.6 -2.5 amidophosphoribosyltransferase compare
Atu4137 -0.6 -2.1 hypothetical protein compare
Atu0043 -0.6 -1.1 imidazoleglycerol-phosphate dehydratase compare
Atu0966 -0.6 -1.9 hypothetical protein compare
Atu5427 -0.6 -1.4 hypothetical protein compare
Atu1518 -0.6 -1.4 transcriptional regulator, Fur family compare
Atu0986 -0.6 -1.0 hypothetical protein compare
Atu4853 -0.6 -3.2 hypothetical protein compare
Atu1896 -0.6 -1.7 hypothetical protein compare
Atu2578 -0.6 -2.3 cAMP-dependent protein kinase regulatory subunit compare
Atu2324 -0.6 -1.7 ureidoglycolate hydrolase compare
Atu2803 -0.6 -1.7 Cobalamin biosynthesis associated protein compare
Atu1302 -0.6 -1.5 hypothetical protein compare
Atu5088 -0.6 -1.5 hypothetical protein compare
Atu6133 -0.6 -1.6 conserved hypothetical protein compare
Atu0184 -0.6 -1.0 glucokinase compare
Atu0460 -0.6 -3.2 hypothetical protein compare
Atu3481 -0.6 -1.7 enoyl-CoA hydratase compare
Atu4854 -0.6 -1.6 hypothetical protein compare
Atu1629 -0.6 -1.0 transcriptional regulator, ArsR family compare
Atu3476 -0.6 -2.6 AsnC family transcriptional regulator compare
Atu2804 -0.6 -3.5 cobaltochelatase subunit compare
Atu2793 -0.6 -2.3 cobyrinic acid a,c-diamide synthase compare
Atu4317 -0.6 -1.1 TetR family transcriptional regulator compare
Atu8163 -0.6 -2.7 hypothetical protein compare
Atu5046 -0.6 -2.2 hypothetical protein compare
Atu2802 -0.5 -3.4 precorrin-8X methylmutase compare
Atu0119 -0.5 -0.9 hypothetical protein compare
Atu1588 -0.5 -2.6 homoserine dehydrogenase compare
Atu3707 -0.5 -1.7 phosphoserine aminotransferase compare
Atu0469 -0.5 -3.4 hypothetical protein compare
Atu3071 -0.5 -1.3 hypothetical protein compare
Atu1466 -0.5 -1.2 hypothetical protein compare
Atu2504 -0.5 -2.4 transcriptional regulator, GntR family compare
Atu0749 -0.5 -1.7 biotin synthesis BioY protein compare
Atu3472 -0.5 -1.7 2-oxoisovalerate dehydrogenase subunit beta compare
Atu0201 -0.5 -1.2 hypothetical protein compare
Atu0931 -0.5 -3.8 penicillin binding protein compare
Atu4825 -0.5 -2.9 dehydrogenase compare
Atu2640 -0.5 -1.7 hypothetical protein compare
Atu5444 -0.5 -2.0 short-chain dehydrogenase compare
Atu3018 -0.5 -1.9 hypothetical protein compare
Atu1445 -0.5 -2.2 two component sensor kinase compare
Atu0726 -0.5 -3.5 ring hydroxylating dioxygenase, alpha-subunit compare
Atu6186 -0.5 -1.6 virA/G regulated protein compare
Atu0470 -0.5 -1.4 hypothetical protein compare
Atu3032 -0.5 -1.1 hypothetical protein compare
Atu1177 -0.5 -2.2 hypothetical protein compare
Atu1739 -0.5 -2.3 permease compare
Atu1446 -0.5 -0.8 two component response regulator compare
Atu4530 -0.5 -2.0 TetR family transcriptional regulator compare
Atu2554 -0.5 -1.0 lysyl-tRNA synthetase compare
Atu5424 -0.5 -2.8 oxidoreductase compare
Atu4836 -0.5 -2.3 hypothetical protein compare
Atu3798 -0.5 -2.8 TetR family transcriptional regulator compare
Atu4385 -0.5 -2.3 hypothetical protein compare
Atu4029 -0.5 -1.8 gluconolactonase compare
Atu3486 -0.5 -1.5 DeoR family transcriptional regulator compare
Atu0479 -0.5 -2.0 ABC transporter, substrate binding protein (amino acid) compare
Atu4876 -0.5 -3.3 oxidoreductase compare
Atu0925 -0.5 -1.9 hypothetical protein compare
Atu1620 -0.5 -3.4 triosephosphate isomerase compare
Atu2808 -0.5 -2.4 cobyric acid synthase compare
Atu5160 -0.5 -1.6 transcriptional regulator protein compare
Atu2217 -0.5 -1.6 hypothetical protein compare
Atu4884 -0.5 -1.5 hypothetical protein compare
Atu5504 -0.5 -1.5 hypothetical protein compare
Atu0531 -0.5 -2.1 hypothetical protein compare
Atu3126 -0.5 -1.1 hypothetical protein compare
Atu4840 -0.5 -2.0 hypothetical protein compare
Atu8144 -0.5 -0.9 hypothetical protein compare
Atu3578 -0.5 -2.0 glycerol-3-phosphate dehydrogenase compare
Atu4686 -0.5 -0.9 hypothetical protein compare
Atu4767 -0.5 -1.9 hypothetical protein compare
Atu1387 -0.5 -1.2 transcriptional regulator, GntR family compare
Atu0467 -0.5 -1.5 hypothetical protein compare
Atu8133 -0.5 -1.5 hypothetical protein compare
Atu1737 -0.5 -1.6 hypothetical protein compare
Atu5469 -0.5 -2.7 DNA polymerase IV compare
Atu1110 -0.5 -1.0 cytosol aminopeptidase compare
Atu2766 -0.5 -3.9 NAD-glutamate dehydrogenase compare
Atu3030 -0.5 -2.2 hypothetical protein compare
Atu3468 -0.4 -0.5 hypothetical protein compare
Atu4635 -0.4 -2.0 hypothetical protein compare
Atu2799 -0.4 -1.9 precorrin-6x reductase compare
Atu1019 -0.4 -1.4 hypothetical protein compare
Atu3963 -0.4 -2.4 GntR family transcriptional regulator compare
Atu0503 -0.4 -3.5 enoyl-CoA hydratase compare
Atu4614 -0.4 -2.5 glycosyltransferase compare
Atu2657 -0.4 -1.0 hypothetical protein compare
Atu0727 -0.4 -3.1 ferredoxin I compare
Atu2783 -0.4 -1.7 acetyltransferase compare
Atu1570 -0.4 -0.6 hypothetical protein compare
Atu0939 -0.4 -0.9 PemI protein compare
Atu4083 -0.4 -2.2 aldose epimerase compare
Atu0537 -0.4 -2.0 histidinol dehydrogenase compare
Atu3069 -0.4 -3.1 hypothetical protein compare
Atu2650 -0.4 -2.9 glycerol-3-phosphate dehydrogenase compare
Atu4217 -0.4 -0.5 TetR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in r2a_control experiments