Experiment set49S160 for Pseudomonas putida KT2440

Compare to:

LB with 6-methoxy-2(3H)-benzoxazolone 1.2 mM

200 most important genes:

  gene name fitness t score description  
PP_0164 -3.1 -13.1 conserved protein of unknown function compare
PP_4937 -3.0 -18.8 toluene tolerance protein compare
PP_4994 -2.3 -2.2 conserved protein of unknown function compare
PP_4895 -2.3 -2.7 tRNA dimethylallyltransferase compare
PP_0339 -2.2 -6.8 Pyruvate dehydrogenase E1 component compare
PP_1898 -2.1 -2.0 MotA/TolQ/ExbB proton channel family protein compare
PP_4902 -2.1 -2.0 Oligoribonuclease compare
PP_0691 -1.8 -3.1 Glutamate 5-kinase compare
PP_4700 -1.8 -3.1 pantothenate synthetase compare
PP_4131 -1.8 -9.0 NADH-quinone oxidoreductase subunit N compare
PP_2820 -1.8 -4.2 HTH-type transcriptional regulator nfxB compare
PP_1428 -1.7 -10.8 Sigma factor AlgU negative regulatory protein compare
PP_0833 -1.7 -2.4 queuine tRNA-ribosyltransferase compare
PP_2645 -1.7 -12.9 magnesium transporter, ATP-dependent compare
PP_4008 -1.6 -4.9 ATP-dependent serine protease compare
PP_4723 -1.6 -3.9 Carbamoyl-phosphate synthase large chain compare
PP_0346 -1.5 -9.5 putative Heptose kinase WapQ compare
PP_2356 -1.5 -10.3 putative Phytochrome family protein compare
PP_5329 -1.5 -2.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1734 -1.5 -4.7 Probable septum site-determining protein MinC compare
PP_4880 -1.5 -9.5 exoribonuclease R compare
PP_4058 -1.5 -11.0 1,4-alpha-glucan branching enzyme compare
PP_4126 -1.5 -3.9 NADH-quinone oxidoreductase subunit I compare
PP_4342 -1.4 -4.1 flagellar synthesis regulator, putative ATPase compare
PP_4124 -1.4 -6.8 NADH-quinone oxidoreductase subunit G compare
PP_4121 -1.4 -6.5 NADH-quinone oxidoreductase subunit C/D compare
PP_2378 -1.4 -3.9 Fe/S biogenesis protein NfuA compare
PP_4130 -1.3 -5.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2379 -1.3 -5.7 putative cytochrome oxidase biogenesis protein compare
PP_4120 -1.3 -5.5 NADH-quinone oxidoreductase subunit B compare
PP_0345 -1.3 -6.2 putative Heptose kinase WapP compare
PP_2322 -1.3 -4.1 Major outer membrane lipoprotein compare
PP_4804 -1.2 -2.1 RlpA-like lipoprotein compare
PP_0856 -1.2 -1.4 conserved lipoprotein of unknown function compare
PP_4789 -1.2 -4.6 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1317 -1.2 -4.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5216 -1.2 -2.3 exopolyphosphatase compare
PP_4391 -1.2 -7.0 flagellar basal-body rod protein FlgB compare
PP_3903 -1.1 -3.3 conserved protein of unknown function compare
PP_2402 -1.1 -2.9 putative Sensor histidine kinase compare
PP_4341 -1.1 -7.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4356 -1.1 -3.9 Flagellar protein FliO compare
PP_4122 -1.1 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2429 -1.1 -3.2 putative Membrane protein compare
PP_4724 -1.1 -2.1 Carbamoyl-phosphate synthase small chain compare
PP_4376 -1.1 -9.4 flagellar filament capping protein compare
PP_4361 -1.1 -7.0 Flagellar hook-length control protein FliK compare
PP_4375 -1.1 -7.8 flagellar chaperone, inhibits premature FliC assembly compare
PP_2646 -1.1 -4.8 conserved protein of unknown function compare
PP_2354 -1.1 -7.6 Sensory box histidine kinase/response regulator compare
PP_4369 -1.1 -8.7 Flagellar M-ring protein compare
PP_4378 -1.0 -9.4 flagellin, filament structural protein compare
PP_4386 -1.0 -6.0 flagellar basal-body rod protein FlgF compare
PP_4358 -1.0 -7.0 flagellar synthesis, switching and energizing component compare
PP_4380 -1.0 -8.7 Flagellar hook-associated protein FlgL compare
PP_0846 -1.0 -1.9 DnaK-like molecular chaperone specific for IscU compare
PP_4388 -1.0 -8.9 Flagellar hook protein FlgE compare
PP_4381 -1.0 -8.8 Flagellar hook-associated protein FlgK compare
PP_4098 -1.0 -2.7 UvrABC system protein C compare
PP_4385 -1.0 -7.3 flagellar basal-body rod protein FlgG compare
PP_4343 -1.0 -5.2 Flagellar biosynthesis protein FlhF compare
PP_3916 -1.0 -2.4 conserved protein of unknown function compare
PP_4366 -1.0 -8.0 flagellum-specific ATP synthase compare
PP_4344 -1.0 -8.2 flagellar export pore protein compare
PP_4390 -1.0 -6.3 flagellar basal-body rod protein FlgC compare
PP_0872 -1.0 -5.7 Peptide chain release factor 3 compare
PP_4382 -1.0 -7.7 Peptidoglycan hydrolase FlgJ compare
PP_4365 -1.0 -5.3 Flagellar protein FliJ compare
PP_5084 -1.0 -7.8 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1318 -1.0 -6.4 Cytochrome b compare
PP_4352 -0.9 -8.2 flagellin export apparatus, substrate specificity protein compare
PP_1319 -0.9 -4.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4368 -0.9 -5.7 flagellar motor switch protein compare
PP_1224 -0.9 -5.2 periplasmic subunit of the TolQRA transport system compare
PP_4874 -0.9 -1.1 50S ribosomal protein L9 compare
PP_5328 -0.9 -1.5 putative phosphate transport system permease protein compare
PP_0719 -0.9 -1.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4337 -0.9 -5.5 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4396 -0.9 -4.4 conserved protein of unknown function compare
PP_0484 -0.9 -4.8 transporter of an unknown substrate compare
PP_5146 -0.9 -5.5 RNA pyrophosphohydrolase compare
PP_5322 -0.9 -5.1 putative metal ion transporter compare
PP_4265 -0.9 -2.4 DNA-binding transcriptional dual regulator compare
PP_4129 -0.9 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1384 -0.9 -6.6 Probable efflux pump outer membrane protein TtgC compare
PP_4373 -0.9 -6.6 Transcriptional regulator FleQ compare
PP_4383 -0.9 -5.5 Flagellar P-ring protein compare
PP_2302 -0.9 -4.6 DNA-binding, ATP-dependent protease compare
PP_4904 -0.9 -6.5 Flagellar motor rotation protein compare
PP_4384 -0.8 -7.3 Flagellar L-ring protein compare
PP_2000 -0.8 -1.6 amidophosphoribosyl transferase compare
PP_5748 -0.8 -2.0 cytochrome c heme lyase subunit compare
PP_5350 -0.8 -2.8 Transcriptional regulator, RpiR family compare
PP_4253 -0.8 -3.4 cytochrome c oxidase subunit, cbb3-type compare
PP_5051 -0.8 -1.5 conserved protein of unknown function compare
PP_5327 -0.8 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_t29 -0.8 -1.9 tRNA-Ala compare
PP_0962 -0.8 -3.0 toluene-tolerance protein compare
PP_4892 -0.8 -5.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2144 -0.8 -2.8 Transcriptional regulator, TetR family compare
PP_2336 -0.8 -3.1 aconitate hydratase 1 compare
PP_3899 -0.8 -1.1 conserved protein of unknown function, hicB family compare
PP_4394 -0.8 -5.8 flagella basal body P-ring formation protein compare
PP_4828 -0.8 -1.2 Precorrin-8X methylmutase compare
PP_4824 -0.8 -4.8 Sensor histidine kinase/response regulator compare
PP_5295 -0.8 -1.7 conserved protein of unknown function compare
PP_4379 -0.8 -4.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0065 -0.8 -3.2 NAD-binding component of TrK potassium transporter compare
PP_4333 -0.8 -4.1 CheW domain protein compare
PP_4370 -0.8 -4.6 Flagellar hook-basal body complex protein FliE compare
PP_0377 -0.8 -2.2 coenzyme PQQ synthesis protein D compare
PP_4359 -0.7 -4.6 Flagellar protein FliL compare
PP_4354 -0.7 -3.2 flagellar export apparatus subunit compare
PP_1598 -0.7 -4.4 regulatory intramembrane protein RIP zinc protease compare
PP_4263 -0.7 -3.2 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4355 -0.7 -2.9 flagellar export apparatus subunit compare
PP_4475 -0.7 -5.0 succinylglutamate desuccinylase compare
PP_0435 -0.7 -3.6 Peptidase, M23/M37 family compare
PP_4367 -0.7 -3.5 Flagellar assembly protein FliH compare
PP_2280 -0.7 -2.2 conserved protein of unknown function compare
PP_0293 -0.7 -1.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4993 -0.7 -2.7 Glutathione synthetase compare
PP_2903 -0.7 -2.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4389 -0.7 -4.8 Flagellar basal-body rod modification protein FlgD compare
PP_1142 -0.7 -1.4 conserved protein of unknown function compare
PP_0959 -0.7 -2.1 phospholipid ABC transporter compare
PP_5310 -0.7 -3.9 junction-specific ATP-dependent DNA helicase compare
PP_4353 -0.7 -5.1 Flagellar biosynthetic protein fliR compare
PP_5486 -0.7 -0.9 conserved protein of unknown function compare
PP_4696 -0.7 -4.6 Nitrogen regulation protein NR(I) compare
PP_3519 -0.7 -1.5 putative Lipoprotein compare
PP_4482 -0.7 -3.4 Transcriptional regulator, AraC family compare
PP_4988 -0.7 -4.5 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4320 -0.7 -3.1 cytochrome c-type biogenesis protein compare
PP_4905 -0.7 -4.3 Flagellar motor rotation protein compare
PP_1763 -0.7 -2.7 putative oxidoreductase compare
PP_0022 -0.7 -1.1 hypothetical protein compare
PP_1528 -0.6 -1.6 conserved protein of unknown function compare
PP_5090 -0.6 -2.6 putative cell division protein compare
PP_1623 -0.6 -4.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_2345 -0.6 -2.0 conserved exported protein of unknown function compare
PP_0126 -0.6 -3.0 Cytochrome c4 compare
PP_4332 -0.6 -4.0 Chemotaxis protein CheW compare
PP_0960 -0.6 -3.5 phospholipid ABC transporter binding protein compare
PP_4726 -0.6 -1.3 Chaperone protein DnaJ compare
PP_1217 -0.6 -3.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0832 -0.6 -2.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1719 -0.6 -5.2 Tail-specific protease prc compare
PP_4261 -0.6 -3.1 cation-transporting P-type ATPase compare
PP_0125 -0.6 -3.3 putative cytochrome c-type protein compare
PP_2337 -0.6 -1.9 aconitate isomerase compare
PP_1729 -0.6 -1.3 conserved protein of unknown function compare
PP_4340 -0.6 -2.3 response regulator for chemotactic signal transduction compare
PP_4254 -0.6 -2.0 conserved protein of unknown function compare
PP_1214 -0.6 -1.5 putative transcriptional regulatory protein compare
PP_4891 -0.6 -3.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1575 -0.6 -1.1 conserved protein of unknown function compare
PP_2944 -0.6 -5.0 Sensor histidine kinase compare
PP_0984 -0.6 -3.4 conserved membrane protein of unknown function compare
PP_4004 -0.6 -3.0 DNA translocase FtsK compare
PP_1366 -0.6 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_1783 -0.6 -1.7 dTDP-glucose pyrophosphorylase compare
PP_0063 -0.6 -2.5 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3819 -0.6 -3.8 glutathione reductase (NADPH) compare
PP_3625 -0.6 -2.3 Transporter, LysE family compare
PP_5422 -0.6 -2.7 hypothetical protein compare
PP_4944 -0.6 -2.0 Carbamoyltransferase compare
PP_2433 -0.6 -1.3 conserved protein of unknown function compare
PP_4941 -0.6 -2.8 conserved exported protein of unknown function compare
PP_2217 -0.6 -1.8 enoyl-CoA hydratase compare
PP_0593 -0.6 -0.9 putative ribosome-binding factor compare
PP_5338 -0.6 -2.5 aspartate ammonia-lyase compare
PP_1646 -0.6 -2.5 putative Thioredoxin compare
PP_1176 -0.6 -1.7 conserved protein of unknown function compare
PP_4286 -0.6 -3.8 allantoinase compare
PP_0001 -0.5 -1.3 probable chromosome-partitioning protein compare
PP_1994 -0.5 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_4693 -0.5 -2.0 RNA polymerase-binding transcription factor DksA compare
PP_2031 -0.5 -1.6 conserved protein of unknown function compare
PP_4251 -0.5 -2.6 cytochrome c oxidase subunit, cbb3-type compare
PP_5028 -0.5 -2.9 proline iminopeptidase compare
PP_1733 -0.5 -1.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_1187 -0.5 -3.7 sensor protein compare
PP_0949 -0.5 -3.3 putative ATP-binding protein UPF0042 compare
PP_4331 -0.5 -2.8 conserved protein of unknown function compare
PP_2942 -0.5 -4.5 Response regulator compare
PP_4334 -0.5 -4.1 ParA family protein compare
PP_0961 -0.5 -3.4 toluene tolerance protein compare
PP_2945 -0.5 -2.7 putative sensor histidine kinase/response regulator compare
PP_5209 -0.5 -3.3 conserved exported protein of unknown function compare
PP_0111 -0.5 -3.7 Electron transport protein SCO1/SenC compare
PP_4836 -0.5 -2.5 conserved exported protein of unknown function compare
PP_1493 -0.5 -2.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0888 -0.5 -1.2 Photosynthetic apparatus regulatory protein RegA compare
PP_1087 -0.5 -3.6 Outer membrane protein, OmpA family compare
PP_1513 -0.5 -1.9 Ribosomal RNA small subunit methyltransferase J compare
PP_1609 -0.5 -0.9 conserved protein of unknown function compare
PP_4997 -0.5 -1.5 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4066 -0.5 -2.4 methylglutaconyl-CoA hydratase compare
PP_0127 -0.5 -2.1 Thiol:disulfide interchange protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms