Experiment set49S156 for Pseudomonas putida KT2440

Compare to:

LB with Dimethyl Sulfoxide 1 vol%

200 most important genes:

  gene name fitness t score description  
PP_0691 -2.5 -3.3 Glutamate 5-kinase compare
PP_0339 -1.8 -5.9 Pyruvate dehydrogenase E1 component compare
PP_2645 -1.8 -13.6 magnesium transporter, ATP-dependent compare
PP_4723 -1.8 -2.9 Carbamoyl-phosphate synthase large chain compare
PP_4964 -1.5 -2.4 D-erythrose 4-phosphate dehydrogenase compare
PP_1898 -1.5 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PP_4700 -1.5 -2.7 pantothenate synthetase compare
PP_0888 -1.4 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_0164 -1.4 -7.6 conserved protein of unknown function compare
PP_4265 -1.4 -2.9 DNA-binding transcriptional dual regulator compare
PP_4895 -1.4 -2.0 tRNA dimethylallyltransferase compare
PP_4880 -1.4 -8.7 exoribonuclease R compare
PP_4126 -1.4 -2.9 NADH-quinone oxidoreductase subunit I compare
PP_2356 -1.2 -10.2 putative Phytochrome family protein compare
PP_2322 -1.2 -3.7 Major outer membrane lipoprotein compare
PP_1268 -1.1 -3.1 putative HtrA suppressor protein sohA compare
PP_4058 -1.1 -9.0 1,4-alpha-glucan branching enzyme compare
PP_4937 -1.1 -8.4 toluene tolerance protein compare
PP_1734 -1.1 -3.7 Probable septum site-determining protein MinC compare
PP_4724 -1.1 -1.9 Carbamoyl-phosphate synthase small chain compare
PP_4994 -1.1 -1.8 conserved protein of unknown function compare
PP_4902 -1.1 -1.4 Oligoribonuclease compare
PP_4008 -1.1 -3.5 ATP-dependent serine protease compare
PP_4789 -1.1 -6.0 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5322 -1.0 -6.6 putative metal ion transporter compare
PP_0760 -1.0 -5.0 conserved membrane protein of unknown function compare
PP_2402 -1.0 -2.4 putative Sensor histidine kinase compare
PP_0833 -1.0 -1.7 queuine tRNA-ribosyltransferase compare
PP_4726 -1.0 -2.4 Chaperone protein DnaJ compare
PP_5216 -1.0 -2.4 exopolyphosphatase compare
PP_4999 -0.9 -0.6 dihydroorotase-like protein compare
PP_2354 -0.9 -7.2 Sensory box histidine kinase/response regulator compare
PP_5338 -0.9 -3.6 aspartate ammonia-lyase compare
PP_0393 -0.9 -2.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0218 -0.9 -6.8 Sensory box protein compare
PP_5456 -0.9 -1.6 conserved protein of unknown function compare
PP_4804 -0.9 -1.6 RlpA-like lipoprotein compare
PP_3519 -0.9 -2.2 putative Lipoprotein compare
PP_1224 -0.9 -4.9 periplasmic subunit of the TolQRA transport system compare
PP_2302 -0.8 -4.9 DNA-binding, ATP-dependent protease compare
PP_4204 -0.8 -2.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2145 -0.8 -3.3 beta-N-acetylglucosaminidase compare
PP_0293 -0.8 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1493 -0.8 -3.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1319 -0.8 -4.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0856 -0.8 -1.2 conserved lipoprotein of unknown function compare
PP_2378 -0.8 -2.4 Fe/S biogenesis protein NfuA compare
PP_4517 -0.8 -2.5 conserved protein of unknown function compare
PP_4251 -0.8 -3.4 cytochrome c oxidase subunit, cbb3-type compare
PP_1128 -0.8 -2.6 OmpA family protein compare
PP_1702 -0.8 -3.6 Recombination-associated protein RdgC compare
PP_5162 -0.8 -3.3 conserved exported protein of unknown function compare
PP_3411 -0.7 -1.5 conserved protein of unknown function compare
PP_4129 -0.7 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2646 -0.7 -2.0 conserved protein of unknown function compare
PP_3824 -0.7 -1.8 conserved exported protein of unknown function compare
PP_1994 -0.7 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_4131 -0.7 -4.5 NADH-quinone oxidoreductase subunit N compare
PP_4342 -0.7 -2.5 flagellar synthesis regulator, putative ATPase compare
PP_1318 -0.7 -4.0 Cytochrome b compare
PP_0566 -0.7 -1.5 translation-related factor compare
PP_5329 -0.7 -1.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2087 -0.7 -2.3 CmpX protein compare
PP_4379 -0.7 -3.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0872 -0.7 -4.1 Peptide chain release factor 3 compare
PP_5014 -0.7 -1.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_2903 -0.7 -1.6 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4121 -0.7 -3.9 NADH-quinone oxidoreductase subunit C/D compare
PP_5225 -0.7 -1.6 frataxin compare
PP_4988 -0.7 -4.0 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_2214 -0.7 -3.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5090 -0.7 -2.7 putative cell division protein compare
PP_5331 -0.6 -2.2 Long-chain acyl-CoA thioester hydrolase compare
PP_2000 -0.6 -1.4 amidophosphoribosyl transferase compare
PP_5327 -0.6 -2.4 putative phosphate ABC transporter, permease subunit compare
PP_5310 -0.6 -3.7 junction-specific ATP-dependent DNA helicase compare
PP_1317 -0.6 -3.3 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4419 -0.6 -2.3 transposase compare
PP_1912 -0.6 -3.6 Phosphate acyltransferase compare
PP_1733 -0.6 -1.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_t29 -0.6 -1.4 tRNA-Ala compare
PP_4362 -0.6 -2.5 conserved protein of unknown function compare
PP_4944 -0.6 -2.4 Carbamoyltransferase compare
PP_5748 -0.6 -2.0 cytochrome c heme lyase subunit compare
PP_4356 -0.6 -3.6 Flagellar protein FliO compare
PP_2433 -0.6 -1.6 conserved protein of unknown function compare
PP_1187 -0.6 -4.7 sensor protein compare
PP_4004 -0.6 -2.6 DNA translocase FtsK compare
PP_5328 -0.6 -1.0 putative phosphate transport system permease protein compare
PP_4368 -0.6 -4.0 flagellar motor switch protein compare
PP_4261 -0.6 -3.4 cation-transporting P-type ATPase compare
PP_0484 -0.6 -3.7 transporter of an unknown substrate compare
PP_0065 -0.6 -2.3 NAD-binding component of TrK potassium transporter compare
PP_0984 -0.6 -3.4 conserved membrane protein of unknown function compare
PP_5473 -0.6 -2.6 putative transcriptional regulator, LuxR family compare
PP_3819 -0.6 -4.0 glutathione reductase (NADPH) compare
PP_4696 -0.6 -3.9 Nitrogen regulation protein NR(I) compare
PP_4546 -0.6 -2.7 ATP-dependent helicase HrpA compare
PP_0401 -0.6 -1.4 Ribosomal RNA small subunit methyltransferase A compare
PP_2581 -0.6 -1.4 conserved protein of unknown function compare
PP_3505 -0.6 -1.3 conserved protein of unknown function compare
PP_1232 -0.5 -2.2 conserved exported protein of unknown function compare
PP_1428 -0.5 -4.2 Sigma factor AlgU negative regulatory protein compare
PP_1598 -0.5 -3.0 regulatory intramembrane protein RIP zinc protease compare
PP_0119 -0.5 -2.7 putative zinc uptake regulation protein ZUR compare
PP_4961 -0.5 -1.3 putative Lipoprotein compare
PP_0504 -0.5 -3.1 Outer membrane protein OprG compare
PP_4122 -0.5 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0007 -0.5 -1.5 conserved hypothetical protein compare
PP_0319 -0.5 -1.7 conserved protein of unknown function compare
PP_0435 -0.5 -2.4 Peptidase, M23/M37 family compare
PP_4263 -0.5 -2.4 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4352 -0.5 -4.5 flagellin export apparatus, substrate specificity protein compare
PP_4917 -0.5 -2.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4343 -0.5 -3.1 Flagellar biosynthesis protein FlhF compare
PP_4130 -0.5 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1575 -0.5 -1.2 conserved protein of unknown function compare
PP_4124 -0.5 -2.8 NADH-quinone oxidoreductase subunit G compare
PP_4993 -0.5 -2.0 Glutathione synthetase compare
PP_4213 -0.5 -2.0 putative dipeptidase compare
PP_0250 -0.5 -2.1 heat shock protein Hsp15 involved in ribosome recycling compare
PP_1214 -0.5 -1.9 putative transcriptional regulatory protein compare
PP_1055 -0.5 -0.6 Type II secretion pathway protein GspN compare
PP_1589 -0.5 -3.9 uridylyltransferase compare
PP_0949 -0.5 -3.1 putative ATP-binding protein UPF0042 compare
PP_2379 -0.5 -2.4 putative cytochrome oxidase biogenesis protein compare
PP_4835 -0.5 -1.2 conserved exported protein of unknown function compare
PP_4344 -0.5 -4.2 flagellar export pore protein compare
PP_4369 -0.5 -3.8 Flagellar M-ring protein compare
PP_0126 -0.5 -2.1 Cytochrome c4 compare
PP_0887 -0.5 -3.3 Sensor histidine kinase compare
PP_4341 -0.5 -3.5 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0001 -0.5 -0.9 probable chromosome-partitioning protein compare
PP_4320 -0.5 -2.8 cytochrome c-type biogenesis protein compare
PP_3758 -0.5 -2.7 Response regulator/sensor histidine kinase compare
PP_1176 -0.5 -1.2 conserved protein of unknown function compare
PP_4824 -0.5 -3.0 Sensor histidine kinase/response regulator compare
PP_5109 -0.5 -3.0 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_2203 -0.5 -1.7 conserved protein of unknown function compare
PP_4366 -0.5 -3.9 flagellum-specific ATP synthase compare
PP_5052 -0.5 -1.8 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_2509 -0.5 -1.6 conserved protein of unknown function compare
PP_4722 -0.5 -2.4 Transcription elongation factor GreA compare
PP_3759 -0.5 -3.0 Methylesterase, CheB-like compare
PP_1215 -0.5 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_0834 -0.5 -1.0 Sec translocation complex subunit YajC compare
PP_4286 -0.5 -2.9 allantoinase compare
PP_1512 -0.5 -1.9 conserved protein of unknown function compare
PP_4380 -0.4 -4.2 Flagellar hook-associated protein FlgL compare
PP_4358 -0.4 -3.8 flagellar synthesis, switching and energizing component compare
PP_4381 -0.4 -4.1 Flagellar hook-associated protein FlgK compare
PP_3876 -0.4 -1.8 conserved protein of unknown function compare
PP_5140 -0.4 -2.4 Transcriptional regulator, MerR family compare
PP_2323 -0.4 -2.3 conserved protein of unknown function compare
PP_4391 -0.4 -3.1 flagellar basal-body rod protein FlgB compare
PP_4909 -0.4 -3.2 phosphoserine phosphatase compare
PP_4361 -0.4 -3.4 Flagellar hook-length control protein FliK compare
PP_4370 -0.4 -3.0 Flagellar hook-basal body complex protein FliE compare
PP_0919 -0.4 -1.7 conserved protein of unknown function compare
PP_2030 -0.4 -2.6 conserved protein of unknown function compare
PP_0673 -0.4 -1.0 conserved protein of unknown function compare
PP_4250 -0.4 -3.5 cytochrome c oxidase subunit I, cbb3-type compare
PP_4693 -0.4 -1.6 RNA polymerase-binding transcription factor DksA compare
PP_3946 -0.4 -0.9 HTH-type transcriptional repressor NicR compare
PP_0957 -0.4 -1.8 D-arabinose 5-phosphate isomerase compare
PP_3829 -0.4 -2.0 Molybdenum transport system permease protein ModB compare
PP_4561 -0.4 -0.9 stress response protein compare
PP_0719 -0.4 -0.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4892 -0.4 -2.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0937 -0.4 -2.2 endoribonuclease G (RNAse G) compare
PP_4482 -0.4 -1.9 Transcriptional regulator, AraC family compare
PP_4378 -0.4 -3.8 flagellin, filament structural protein compare
PP_2597 -0.4 -2.2 conserved protein of unknown function compare
PP_2414 -0.4 -1.3 conserved exported protein of unknown function compare
PP_0434 -0.4 -2.2 Anhydro-N-acetylmuramic acid kinase compare
PP_4682 -0.4 -2.4 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_4253 -0.4 -1.9 cytochrome c oxidase subunit, cbb3-type compare
PP_5008 -0.4 -0.7 Poly granule-associated protein compare
PP_4699 -0.4 -1.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2945 -0.4 -2.7 putative sensor histidine kinase/response regulator compare
PP_4388 -0.4 -3.6 Flagellar hook protein FlgE compare
PP_4375 -0.4 -3.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_0346 -0.4 -2.9 putative Heptose kinase WapQ compare
PP_1062 -0.4 -1.8 MutT/nudix family protein compare
PP_4353 -0.4 -2.9 Flagellar biosynthetic protein fliR compare
PP_5045 -0.4 -2.1 tRNA sulfurtransferase compare
PP_1523 -0.4 -1.6 conserved protein of unknown function compare
PP_0848 -0.4 -1.6 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4475 -0.4 -2.5 succinylglutamate desuccinylase compare
PP_4367 -0.4 -2.6 Flagellar assembly protein FliH compare
PP_0832 -0.4 -1.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4385 -0.4 -2.6 flagellar basal-body rod protein FlgG compare
PP_4376 -0.4 -3.4 flagellar filament capping protein compare
PP_0697 -0.4 -2.5 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_4260 -0.4 -2.4 conserved protein of unknown function compare
PP_3926 -0.4 -1.1 short-chain dehydrogenase compare
PP_4838 -0.4 -3.0 Outer membrane copper receptor OprC compare
PP_3726 -0.4 -1.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_1763 -0.4 -1.9 putative oxidoreductase compare
PP_2456 -0.4 -2.4 D-ribose ABC transporter - permease subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Dimethyl Sulfoxide across organisms