Experiment set49S155 for Pseudomonas putida KT2440

Compare to:

LB_noSalt with Sodium Chloride 1100 mM

200 most important genes:

  gene name fitness t score description  
PP_4099 -4.0 -35.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3821 -3.8 -19.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1650 -3.8 -24.1 Sensor protein GacS compare
PP_4943 -3.1 -4.1 putative Glycosyl transferase compare
PP_2645 -2.8 -18.4 magnesium transporter, ATP-dependent compare
PP_4994 -2.8 -1.9 conserved protein of unknown function compare
PP_1898 -2.6 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PP_0123 -2.6 -14.2 DNA polymerase I, 5 compare
PP_1036 -2.6 -16.5 membrane-bound lytic murein transglycosylase F compare
PP_4902 -2.5 -1.7 Oligoribonuclease compare
PP_0833 -2.2 -2.5 queuine tRNA-ribosyltransferase compare
PP_4895 -2.1 -2.1 tRNA dimethylallyltransferase compare
PP_4789 -2.0 -10.1 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0339 -2.0 -6.5 Pyruvate dehydrogenase E1 component compare
PP_4803 -2.0 -8.4 D-alanyl-D-alanine carboxypeptidase compare
PP_0872 -1.9 -8.8 Peptide chain release factor 3 compare
PP_0435 -1.8 -7.9 Peptidase, M23/M37 family compare
PP_1198 -1.8 -2.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0691 -1.8 -3.2 Glutamate 5-kinase compare
PP_5322 -1.8 -10.8 putative metal ion transporter compare
PP_2336 -1.7 -5.4 aconitate hydratase 1 compare
PP_5053 -1.6 -9.6 Protein-export protein SecB compare
PP_0856 -1.6 -1.1 conserved lipoprotein of unknown function compare
PP_1623 -1.6 -8.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_1215 -1.5 -3.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_4804 -1.5 -2.4 RlpA-like lipoprotein compare
PP_5706 -1.5 -2.0 Sec translocation complex - SecG subunit compare
PP_0566 -1.5 -2.6 translation-related factor compare
PP_2322 -1.5 -4.5 Major outer membrane lipoprotein compare
PP_4940 -1.5 -10.1 Putative glycosyltransferase compare
PP_3519 -1.4 -3.0 putative Lipoprotein compare
PP_1224 -1.4 -6.7 periplasmic subunit of the TolQRA transport system compare
PP_2928 -1.4 -9.1 Saccharopine dehydrogenase compare
PP_0888 -1.4 -2.8 Photosynthetic apparatus regulatory protein RegA compare
PP_4880 -1.4 -9.0 exoribonuclease R compare
PP_2646 -1.4 -5.3 conserved protein of unknown function compare
PP_0719 -1.4 -2.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4785 -1.4 -3.7 conserved exported protein of unknown function compare
PP_1598 -1.4 -5.1 regulatory intramembrane protein RIP zinc protease compare
PP_0393 -1.3 -3.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5310 -1.3 -6.7 junction-specific ATP-dependent DNA helicase compare
PP_4723 -1.3 -3.8 Carbamoyl-phosphate synthase large chain compare
PP_0852 -1.3 -5.5 Transcriptional regulator, Cro/CI family compare
PP_4700 -1.2 -2.6 pantothenate synthetase compare
PP_2348 -1.2 -5.6 Sensor histidine kinase compare
PP_1801 -1.2 -8.6 Glycosyl transferase WbpY compare
PP_3649 -1.2 -3.8 Transcriptional regulator, GntR family compare
PP_0938 -1.2 -8.9 conserved protein of unknown function compare
PP_2929 -1.2 -8.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1428 -1.2 -8.6 Sigma factor AlgU negative regulatory protein compare
PP_5045 -1.2 -6.4 tRNA sulfurtransferase compare
PP_1232 -1.2 -4.5 conserved exported protein of unknown function compare
PP_4696 -1.2 -7.7 Nitrogen regulation protein NR(I) compare
PP_4058 -1.1 -8.9 1,4-alpha-glucan branching enzyme compare
PP_1802 -1.1 -9.9 glycosyl transferase compare
PP_2299 -1.1 -3.5 Trigger factor compare
PP_1185 -1.1 -6.1 Outer membrane protein H1 compare
PP_1776 -1.1 -10.1 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4938 -1.1 -7.8 putative Glycosyl transferase compare
PP_1805 -1.1 -10.2 Polysaccharide biosynthesis protein compare
PP_1734 -1.1 -3.8 Probable septum site-determining protein MinC compare
PP_2030 -1.0 -4.4 conserved protein of unknown function compare
PP_1800 -1.0 -7.5 Oxidoreductase Rmd compare
PP_3957 -1.0 -9.0 choline/carnitine/betaine transporter BetTC conserved
PP_4824 -1.0 -6.1 Sensor histidine kinase/response regulator compare
PP_1799 -1.0 -8.0 GDP-mannose 4,6-dehydratase compare
PP_1918 -1.0 -8.7 septation protein compare
PP_4004 -1.0 -4.1 DNA translocase FtsK compare
PP_0246 -1.0 -3.1 two-component system DNA-binding response transcriptional dual regulator compare
PP_4724 -1.0 -1.9 Carbamoyl-phosphate synthase small chain compare
PP_1427 -1.0 -6.6 RNA polymerase sigma E factor compare
PP_2032 -1.0 -6.5 putative ATPase compare
PP_2027 -1.0 -7.2 conserved exported protein of unknown function compare
PP_4892 -1.0 -6.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4008 -1.0 -3.4 ATP-dependent serine protease compare
PP_4695 -1.0 -8.3 Sensory box histidine kinase compare
PP_2031 -0.9 -4.5 conserved protein of unknown function compare
PP_4342 -0.9 -3.3 flagellar synthesis regulator, putative ATPase compare
PP_1804 -0.9 -6.9 Glycosyl transferase WbpL compare
PP_0951 -0.9 -7.7 Ribosome hibernation promoting factor compare
PP_4937 -0.9 -6.1 toluene tolerance protein compare
PP_4897 -0.9 -3.9 N-acetylmuramoyl-L-alanine amidase compare
PP_t29 -0.9 -2.7 tRNA-Ala compare
PP_2581 -0.9 -2.5 conserved protein of unknown function compare
PP_4766 -0.9 -6.3 ATP-dependent RNA helicase compare
PP_5100 -0.9 -2.8 dITP/XTP pyrophosphatase compare
PP_0941 -0.9 -4.6 putative ribosome associated protein compare
PP_4726 -0.9 -2.3 Chaperone protein DnaJ compare
PP_2217 -0.9 -3.5 enoyl-CoA hydratase compare
PP_2337 -0.9 -2.2 aconitate isomerase compare
PP_3329 -0.9 -7.4 conserved membrane protein of unknown function compare
PP_1187 -0.9 -6.1 sensor protein compare
PP_1646 -0.8 -4.3 putative Thioredoxin compare
PP_4891 -0.8 -4.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0832 -0.8 -3.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1237 -0.8 -2.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1663 -0.8 -5.9 conserved exported protein of unknown function compare
PP_1055 -0.8 -2.4 Type II secretion pathway protein GspN compare
PP_4835 -0.8 -2.4 conserved exported protein of unknown function compare
PP_1783 -0.8 -2.0 dTDP-glucose pyrophosphorylase compare
PP_5146 -0.8 -5.6 RNA pyrophosphohydrolase compare
PP_5177 -0.8 -4.5 spermidine/putrescine ABC transporter - permease subunit compare
PP_0063 -0.8 -2.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2340 -0.8 -3.4 conserved protein of unknown function compare
PP_2028 -0.8 -3.9 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2402 -0.8 -2.5 putative Sensor histidine kinase compare
PP_0846 -0.8 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_5309 -0.7 -5.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_5230 -0.7 -3.7 Tyrosine recombinase XerC compare
PP_0957 -0.7 -2.4 D-arabinose 5-phosphate isomerase compare
PP_1780 -0.7 -6.8 putative mannosyltransferase compare
PP_2029 -0.7 -3.7 von Willebrand factor type A domain protein compare
PP_5161 -0.7 -3.4 putative lysophospholipase compare
PP_t49 -0.7 -4.1 tRNA-Met compare
PP_5329 -0.7 -1.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1629 -0.7 -4.3 Protein RecA compare
PP_0111 -0.7 -4.9 Electron transport protein SCO1/SenC compare
PP_1208 -0.7 -2.4 conserved protein of unknown function, SlyX family compare
PP_5502 -0.7 -4.0 ribosome modulation factor compare
PP_4787 -0.7 -2.8 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1268 -0.7 -2.4 putative HtrA suppressor protein sohA compare
PP_2633 -0.7 -1.8 conserved protein of unknown function compare
PP_4917 -0.7 -3.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0949 -0.7 -4.3 putative ATP-binding protein UPF0042 compare
PP_4936 -0.7 -4.8 O-antigen polymerase compare
PP_1999 -0.6 -2.2 membrane protein required for colicin V production compare
PP_1906 -0.6 -3.0 ribosomal large subunit pseudouridine synthase C compare
PP_0125 -0.6 -2.3 putative cytochrome c-type protein compare
PP_1217 -0.6 -3.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5109 -0.6 -4.5 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_3105 -0.6 -2.0 conserved membrane protein of unknown function compare
PP_2433 -0.6 -2.1 conserved protein of unknown function compare
PP_5352 -0.6 -5.5 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_5145 -0.6 -5.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1186 -0.6 -2.0 two component system DNA-binding transcriptional dual regulator compare
PP_1216 -0.6 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1912 -0.6 -2.9 Phosphate acyltransferase compare
PP_4989 -0.6 -2.1 Protein PilJ compare
PP_2147 -0.6 -3.0 conserved exported protein of unknown function compare
PP_1803 -0.6 -4.9 UDP-sugar epimerase compare
PP_2379 -0.6 -2.9 putative cytochrome oxidase biogenesis protein compare
PP_4204 -0.6 -2.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2378 -0.6 -2.0 Fe/S biogenesis protein NfuA compare
PP_4942 -0.6 -1.5 conserved protein of unknown function compare
PP_1733 -0.6 -1.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_0758 -0.6 -2.8 conserved protein of unknown function compare
PP_2229 -0.6 -2.6 putative K(+)/H(+) antiporter subunit C compare
PP_1293 -0.6 -1.2 molybdopterin synthase small subunit compare
PP_5178 -0.5 -4.5 spermidine/putrescine ABC transporter - inner membrane subunit compare
PP_1128 -0.5 -2.2 OmpA family protein compare
PP_4304 -0.5 -4.4 Cation transporter, VIC family compare
PP_4683 -0.5 -4.7 transglycosylase/transpeptidase compare
PP_0195 -0.5 -1.0 conserved protein of unknown function compare
PP_3924 -0.5 -2.0 conserved protein of unknown function compare
PP_5216 -0.5 -1.5 exopolyphosphatase compare
PP_1034 -0.5 -4.4 multicopper oxidase compare
PP_1384 -0.5 -4.2 Probable efflux pump outer membrane protein TtgC compare
PP_1763 -0.5 -2.6 putative oxidoreductase compare
PP_5179 -0.5 -3.8 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_2230 -0.5 -4.5 putative K(+)/H(+) antiporter subunit A/B compare
PP_0345 -0.5 -3.7 putative Heptose kinase WapP compare
PP_1062 -0.5 -1.8 MutT/nudix family protein compare
PP_0188 -0.5 -3.0 putative Uroporphyrin-III C-methyltransferase compare
PP_4261 -0.5 -3.1 cation-transporting P-type ATPase compare
PP_4836 -0.5 -1.7 conserved exported protein of unknown function compare
PP_0377 -0.5 -1.6 coenzyme PQQ synthesis protein D compare
PP_1778 -0.5 -3.0 Lipopolysaccharide ABC export system, permease protein compare
PP_4131 -0.5 -3.3 NADH-quinone oxidoreductase subunit N compare
PP_1467 -0.5 -4.0 NhaP-type Na+(K+)/H+ antiporter compare
PP_2025 -0.5 -2.0 Exonuclease SbcD compare
PP_2944 -0.5 -4.2 Sensor histidine kinase compare
PP_5350 -0.5 -2.1 Transcriptional regulator, RpiR family compare
PP_2907 -0.5 -1.4 DNA-binding response regulator compare
PP_4964 -0.5 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_5439 -0.5 -3.0 conserved protein of unknown function compare
PP_0266 -0.5 -3.5 Agmatine deiminase compare
PP_3359 -0.5 -1.4 putative Hydroxycinnamic acid degradation regulator compare
PP_2945 -0.5 -3.2 putative sensor histidine kinase/response regulator compare
PP_4386 -0.5 -2.7 flagellar basal-body rod protein FlgF compare
PP_1628 -0.5 -2.7 NMN amidohydrolase compare
PP_0567 -0.5 -4.0 Biosynthetic arginine decarboxylase compare
PP_5328 -0.5 -0.9 putative phosphate transport system permease protein compare
PP_4561 -0.5 -1.0 stress response protein compare
PP_1099 -0.5 -1.8 Cold shock protein CapB compare
PP_1714 -0.5 -2.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_1673 -0.5 -3.0 cobyrinate a,c-diamide synthase compare
PP_2331 -0.5 -3.1 conserved membrane protein of unknown function compare
PP_1385 -0.5 -4.2 Probable efflux pump membrane transporter TtgB compare
PP_2942 -0.5 -4.0 Response regulator compare
PP_0887 -0.5 -3.5 Sensor histidine kinase compare
PP_1656 -0.5 -3.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_5315 -0.5 -1.9 Rubredoxin-1 compare
PP_4475 -0.5 -2.8 succinylglutamate desuccinylase compare
PP_4150 -0.5 -3.0 microcin C transporter - ATP binding subunit compare
PP_4720 -0.4 -1.5 putative RNA binding protein compare
PP_0937 -0.4 -2.2 endoribonuclease G (RNAse G) compare
PP_0760 -0.4 -1.9 conserved membrane protein of unknown function compare
PP_5181 -0.4 -3.9 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_3312 -0.4 -1.5 putative Heat shock protein compare
PP_5139 -0.4 -2.6 cadmium translocating P-type ATPase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium Chloride in Pseudomonas putida KT2440

For stress Sodium Chloride across organisms