Experiment set49S149 for Pseudomonas putida KT2440

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Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PP_0164 -5.4 -6.4 conserved protein of unknown function compare
PP_4943 -4.7 -2.4 putative Glycosyl transferase compare
PP_4909 -4.6 -12.1 phosphoserine phosphatase compare
PP_5185 -4.4 -10.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4936 -4.4 -11.4 O-antigen polymerase compare
PP_3484 -4.3 -7.8 Response regulator receiver protein compare
PP_0184 -4.1 -8.8 Argininosuccinate lyase compare
PP_4680 -3.8 -19.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2903 -3.7 -2.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5155 -3.7 -6.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1088 -3.6 -14.3 Argininosuccinate synthase compare
PP_4679 -3.5 -10.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0872 -3.4 -9.2 Peptide chain release factor 3 compare
PP_4058 -3.4 -14.3 1,4-alpha-glucan branching enzyme compare
PP_1224 -3.3 -8.2 periplasmic subunit of the TolQRA transport system compare
PP_1872 -3.2 -12.2 glutamate-pyruvate aminotransferase compare
PP_4938 -3.2 -11.1 putative Glycosyl transferase compare
PP_3649 -3.2 -3.8 Transcriptional regulator, GntR family compare
PP_4940 -3.1 -12.4 Putative glycosyltransferase compare
PP_3821 -3.1 -14.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4122 -3.1 -3.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5098 -3.1 -7.5 methionine biosynthesis protein MetW compare
PP_4766 -3.0 -10.6 ATP-dependent RNA helicase compare
PP_3511 -3.0 -9.4 Branched-chain-amino-acid aminotransferase compare
PP_1912 -2.9 -6.4 Phosphate acyltransferase compare
PP_4342 -2.9 -3.8 flagellar synthesis regulator, putative ATPase compare
PP_4126 -2.9 -2.9 NADH-quinone oxidoreductase subunit I compare
PP_4124 -2.9 -7.4 NADH-quinone oxidoreductase subunit G compare
PP_0339 -2.9 -3.4 Pyruvate dehydrogenase E1 component compare
PP_0393 -2.8 -3.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1237 -2.8 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4379 -2.8 -5.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5289 -2.8 -5.0 Acetylglutamate kinase compare
PP_4517 -2.7 -2.4 conserved protein of unknown function compare
PP_2378 -2.7 -3.9 Fe/S biogenesis protein NfuA compare
PP_0691 -2.7 -1.8 Glutamate 5-kinase compare
PP_2645 -2.6 -10.5 magnesium transporter, ATP-dependent compare
PP_4696 -2.6 -7.8 Nitrogen regulation protein NR(I) compare
PP_4941 -2.5 -4.6 conserved exported protein of unknown function compare
PP_0846 -2.5 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_0082 -2.5 -6.1 tryptophan synthase alpha chain compare
PP_0435 -2.5 -6.0 Peptidase, M23/M37 family compare
PP_4121 -2.5 -6.9 NADH-quinone oxidoreductase subunit C/D compare
PP_4824 -2.4 -8.1 Sensor histidine kinase/response regulator compare
PP_1778 -2.4 -4.9 Lipopolysaccharide ABC export system, permease protein compare
PP_2402 -2.4 -3.0 putative Sensor histidine kinase compare
PP_0083 -2.4 -5.6 tryptophan synthase beta chain compare
PP_4944 -2.4 -4.0 Carbamoyltransferase compare
PP_5097 -2.4 -12.3 homoserine O-acetyltransferase compare
PP_4532 -2.3 -3.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0735 -2.3 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_1988 -2.3 -8.3 3-isopropylmalate dehydrogenase compare
PP_0719 -2.3 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1079 -2.3 -7.5 Ornithine carbamoyltransferase compare
PP_4880 -2.3 -11.2 exoribonuclease R compare
PP_4678 -2.3 -12.9 Ketol-acid reductoisomerase compare
PP_1995 -2.3 -10.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5303 -2.2 -6.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4726 -2.2 -2.2 Chaperone protein DnaJ compare
PP_2001 -2.2 -9.1 O-succinylhomoserine sulfhydrylase compare
PP_4937 -2.2 -5.8 toluene tolerance protein compare
PP_4120 -2.1 -4.2 NADH-quinone oxidoreductase subunit B compare
PP_0420 -2.1 -11.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1664 -2.1 -4.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_4129 -2.1 -5.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5128 -2.1 -6.8 Dihydroxy-acid dehydratase compare
PP_0292 -2.1 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0293 -2.0 -2.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4004 -2.0 -3.9 DNA translocase FtsK compare
PP_0962 -2.0 -3.9 toluene-tolerance protein compare
PP_0117 -2.0 -6.4 Zn(2+) ABC transporter - permease subunit compare
PP_4364 -2.0 -8.9 putative Anti-sigma F factor antagonist compare
PP_1609 -1.9 -2.6 conserved protein of unknown function compare
PP_1783 -1.9 -2.6 dTDP-glucose pyrophosphorylase compare
PP_1493 -1.9 -3.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1985 -1.9 -6.3 3-isopropylmalate dehydratase large subunit compare
PP_1764 -1.8 -3.2 Phosphoglycolate phosphatase 2 compare
PP_1994 -1.8 -2.4 tRNA pseudouridine (38-40)synthase compare
PP_5350 -1.8 -4.0 Transcriptional regulator, RpiR family compare
PP_1428 -1.8 -6.3 Sigma factor AlgU negative regulatory protein compare
PP_0951 -1.8 -8.5 Ribosome hibernation promoting factor compare
PP_1734 -1.8 -3.8 Probable septum site-determining protein MinC compare
PP_4875 -1.8 -4.9 conserved membrane protein of unknown function compare
PP_0422 -1.7 -4.7 Indole-3-glycerol phosphate synthase compare
PP_0417 -1.7 -12.7 Anthranilate synthase component 1 compare
PP_3519 -1.7 -1.4 putative Lipoprotein compare
PP_1319 -1.7 -6.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0421 -1.7 -7.4 Anthranilate phosphoribosyltransferase compare
PP_2646 -1.7 -3.3 conserved protein of unknown function compare
PP_1198 -1.7 -2.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1328 -1.7 -2.7 Protein MraZ compare
PP_2862 -1.6 -5.2 Undecaprenyl-diphosphatase compare
PP_5216 -1.6 -2.2 exopolyphosphatase compare
PP_4130 -1.6 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1022 -1.6 -5.7 glucose 6-phosphate-1-dehydrogenase compare
PP_4131 -1.6 -5.5 NADH-quinone oxidoreductase subunit N compare
PP_2137 -1.6 -3.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_4700 -1.6 -1.1 pantothenate synthetase compare
PP_5027 -1.6 -2.2 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4337 -1.6 -6.7 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_1346 -1.6 -4.7 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_0401 -1.5 -2.0 Ribosomal RNA small subunit methyltransferase A compare
PP_0120 -1.5 -7.1 putative zinc ABC transporter compare
PP_5338 -1.5 -3.5 aspartate ammonia-lyase compare
PP_0547 -1.5 -4.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0967 -1.5 -6.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0753 -1.5 -4.3 putative Lipoprotein compare
PP_0345 -1.5 -5.2 putative Heptose kinase WapP compare
PP_1589 -1.5 -7.0 uridylyltransferase compare
PP_2336 -1.5 -3.5 aconitate hydratase 1 compare
PP_1216 -1.5 -2.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1362 -1.5 -4.2 pyruvate kinase II compare
PP_0833 -1.5 -1.0 queuine tRNA-ribosyltransferase compare
PP_1317 -1.4 -4.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1099 -1.4 -2.1 Cold shock protein CapB compare
PP_5346 -1.4 -5.5 pyruvate carboxylase subunit B compare
PP_1318 -1.4 -6.1 Cytochrome b compare
PP_0966 -1.4 -8.1 Histidinol dehydrogenase compare
PP_2322 -1.4 -5.2 Major outer membrane lipoprotein compare
PP_5310 -1.4 -4.5 junction-specific ATP-dependent DNA helicase compare
PP_0758 -1.4 -4.9 conserved protein of unknown function compare
PP_4362 -1.4 -2.4 conserved protein of unknown function compare
PP_4890 -1.4 -3.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_0406 -1.4 -2.5 Nucleotidyltransferase family protein compare
PP_4695 -1.4 -8.1 Sensory box histidine kinase compare
PP_1898 -1.3 -0.8 MotA/TolQ/ExbB proton channel family protein compare
PP_4722 -1.3 -4.6 Transcription elongation factor GreA compare
PP_0832 -1.3 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0119 -1.3 -4.4 putative zinc uptake regulation protein ZUR compare
PP_5311 -1.3 -6.4 putative signal transduction protein compare
PP_0789 -1.3 -3.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1381 -1.3 -1.1 4-carboxymuconolactone decarboxylase compare
PP_4338 -1.3 -6.2 Chemotaxis histidine kinase CheA compare
PP_4481 -1.3 -4.3 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5075 -1.3 -8.2 glutamate synthase (NADPH) beta subunit compare
PP_2217 -1.3 -3.6 enoyl-CoA hydratase compare
PP_4917 -1.2 -4.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4942 -1.2 -1.7 conserved protein of unknown function compare
PP_4471 -1.2 -2.2 Magnesium transporter compare
PP_4392 -1.2 -5.7 chemotaxis protein methyltransferase compare
PP_5514 -1.2 -2.7 conserved protein of unknown function compare
PP_4895 -1.2 -0.8 tRNA dimethylallyltransferase compare
PP_4994 -1.2 -0.8 conserved protein of unknown function compare
PP_1025 -1.2 -7.4 2-isopropylmalate synthase compare
PP_5145 -1.2 -7.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4066 -1.2 -2.4 methylglutaconyl-CoA hydratase compare
PP_2302 -1.2 -4.4 DNA-binding, ATP-dependent protease compare
PP_4993 -1.2 -2.8 Glutathione synthetase compare
PP_1629 -1.2 -5.4 Protein RecA compare
PP_5076 -1.2 -9.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_1554 -1.2 -2.8 conserved protein of unknown function compare
PP_0965 -1.2 -6.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4067 -1.2 -5.9 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_4724 -1.2 -0.8 Carbamoyl-phosphate synthase small chain compare
PP_0063 -1.2 -3.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1036 -1.2 -6.2 membrane-bound lytic murein transglycosylase F compare
PP_2327 -1.2 -6.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0948 -1.1 -1.1 Phosphocarrier protein HPr compare
PP_5327 -1.1 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_0848 -1.1 -2.1 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_5217 -1.1 -8.5 Polyphosphate kinase compare
PP_3098 -1.1 -0.9 conserved protein of unknown function compare
PP_3506 -1.1 -3.1 Magnesium chelatase, subunit ChII compare
PP_4477 -1.1 -4.5 N-succinylarginine dihydrolase compare
PP_4804 -1.1 -0.8 RlpA-like lipoprotein compare
PP_2160 -1.1 -4.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4065 -1.1 -6.4 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_4009 -1.1 -2.7 ATP-dependent Clp protease adapter protein ClpS compare
PP_0978 -1.1 -2.3 conserved protein of unknown function compare
PP_1779 -1.1 -2.6 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0504 -1.1 -3.9 Outer membrane protein OprG compare
PP_1906 -1.1 -2.2 ribosomal large subunit pseudouridine synthase C compare
PP_3833 -1.1 -3.3 Response regulator compare
PP_5014 -1.1 -2.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4273 -1.1 -1.3 Transcriptional regulator, MerR family compare
PP_1804 -1.1 -5.2 Glycosyl transferase WbpL compare
PP_4375 -1.1 -5.5 flagellar chaperone, inhibits premature FliC assembly compare
PP_4811 -1.1 -3.1 Gamma-glutamyl phosphate reductase compare
PP_5546 -1.1 -1.7 conserved protein of unknown function compare
PP_1733 -1.1 -2.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_1598 -1.1 -3.8 regulatory intramembrane protein RIP zinc protease compare
PP_2088 -1.1 -2.6 RNA polymerase sigma factor SigX compare
PP_4723 -1.1 -0.7 Carbamoyl-phosphate synthase large chain compare
PP_4320 -1.1 -2.7 cytochrome c-type biogenesis protein compare
PP_4396 -1.1 -2.8 conserved protein of unknown function compare
PP_1763 -1.1 -3.0 putative oxidoreductase compare
PP_3102 -1.0 -2.8 conserved protein of unknown function compare
PP_2214 -1.0 -2.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1739 -1.0 -2.6 conserved membrane protein of unknown function compare
PP_4343 -1.0 -3.5 Flagellar biosynthesis protein FlhF compare
PP_5347 -1.0 -6.4 pyruvate carboxylase subunit A compare
PP_0405 -1.0 -5.5 conserved protein of unknown function compare
PP_2029 -1.0 -2.2 von Willebrand factor type A domain protein compare
PP_5026 -1.0 -6.6 Glucans biosynthesis protein G compare
PP_1176 -1.0 -1.4 conserved protein of unknown function compare
PP_4828 -1.0 -0.9 Precorrin-8X methylmutase compare
PP_4367 -1.0 -3.5 Flagellar assembly protein FliH compare
PP_2328 -1.0 -3.6 Phosphoadenosine phosphosulfate reductase compare
PP_4380 -1.0 -8.2 Flagellar hook-associated protein FlgL compare
PP_5015 -1.0 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days across organisms