Experiment set49S113 for Pseudomonas putida KT2440

Compare to:

LB with 6-methoxy-2(3H)-benzoxazolone 2.5 mM

200 most important genes:

  gene name fitness t score description  
PP_4937 -4.1 -20.7 toluene tolerance protein compare
PP_0339 -3.3 -7.8 Pyruvate dehydrogenase E1 component compare
PP_4994 -2.7 -1.8 conserved protein of unknown function compare
PP_4700 -2.6 -3.1 pantothenate synthetase compare
PP_0345 -2.3 -10.1 putative Heptose kinase WapP compare
PP_1428 -2.3 -14.6 Sigma factor AlgU negative regulatory protein compare
PP_1384 -2.2 -16.1 Probable efflux pump outer membrane protein TtgC compare
PP_2820 -2.2 -3.0 HTH-type transcriptional regulator nfxB compare
PP_4902 -2.1 -2.0 Oligoribonuclease compare
PP_0719 -2.1 -2.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0346 -2.0 -13.0 putative Heptose kinase WapQ compare
PP_0164 -2.0 -7.8 conserved protein of unknown function compare
PP_2356 -2.0 -14.1 putative Phytochrome family protein compare
PP_2402 -1.9 -5.0 putative Sensor histidine kinase compare
PP_1898 -1.9 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PP_4131 -1.8 -9.5 NADH-quinone oxidoreductase subunit N compare
PP_3105 -1.8 -5.5 conserved membrane protein of unknown function compare
PP_4126 -1.7 -3.3 NADH-quinone oxidoreductase subunit I compare
PP_4723 -1.7 -4.3 Carbamoyl-phosphate synthase large chain compare
PP_2645 -1.7 -13.7 magnesium transporter, ATP-dependent compare
PP_4804 -1.7 -2.3 RlpA-like lipoprotein compare
PP_4008 -1.7 -5.3 ATP-dependent serine protease compare
PP_1385 -1.6 -14.9 Probable efflux pump membrane transporter TtgB compare
PP_0833 -1.6 -2.5 queuine tRNA-ribosyltransferase compare
PP_4789 -1.6 -7.4 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4124 -1.6 -7.9 NADH-quinone oxidoreductase subunit G compare
PP_4342 -1.6 -4.8 flagellar synthesis regulator, putative ATPase compare
PP_4058 -1.5 -11.9 1,4-alpha-glucan branching enzyme compare
PP_1386 -1.5 -11.3 Probable efflux pump periplasmic linker TtgA compare
PP_5322 -1.5 -9.7 putative metal ion transporter compare
PP_4129 -1.5 -6.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4130 -1.5 -7.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4895 -1.4 -2.6 tRNA dimethylallyltransferase compare
PP_5329 -1.4 -2.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2337 -1.4 -3.7 aconitate isomerase compare
PP_2378 -1.4 -4.1 Fe/S biogenesis protein NfuA compare
PP_4120 -1.4 -5.7 NADH-quinone oxidoreductase subunit B compare
PP_0856 -1.4 -1.3 conserved lipoprotein of unknown function compare
PP_2354 -1.4 -10.2 Sensory box histidine kinase/response regulator compare
PP_4122 -1.3 -3.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4880 -1.3 -9.2 exoribonuclease R compare
PP_5216 -1.3 -2.8 exopolyphosphatase compare
PP_4121 -1.3 -7.7 NADH-quinone oxidoreductase subunit C/D compare
PP_1224 -1.3 -7.3 periplasmic subunit of the TolQRA transport system compare
PP_4098 -1.2 -4.0 UvrABC system protein C compare
PP_2379 -1.2 -5.7 putative cytochrome oxidase biogenesis protein compare
PP_1232 -1.2 -4.8 conserved exported protein of unknown function compare
PP_4482 -1.2 -5.8 Transcriptional regulator, AraC family compare
PP_2903 -1.2 -4.6 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0962 -1.1 -4.1 toluene-tolerance protein compare
PP_0872 -1.1 -7.3 Peptide chain release factor 3 compare
PP_1994 -1.1 -3.3 tRNA pseudouridine (38-40)synthase compare
PP_1734 -1.1 -4.0 Probable septum site-determining protein MinC compare
PP_4724 -1.1 -2.2 Carbamoyl-phosphate synthase small chain compare
PP_5338 -1.1 -4.5 aspartate ammonia-lyase compare
PP_5310 -1.0 -6.9 junction-specific ATP-dependent DNA helicase compare
PP_0063 -1.0 -4.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4213 -1.0 -3.9 putative dipeptidase compare
PP_4892 -0.9 -6.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5327 -0.9 -3.8 putative phosphate ABC transporter, permease subunit compare
PP_5084 -0.9 -8.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0691 -0.9 -2.2 Glutamate 5-kinase compare
PP_4696 -0.9 -6.6 Nitrogen regulation protein NR(I) compare
PP_0832 -0.9 -3.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4379 -0.9 -5.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5350 -0.9 -3.6 Transcriptional regulator, RpiR family compare
PP_4343 -0.9 -4.7 Flagellar biosynthesis protein FlhF compare
PP_4891 -0.9 -5.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3519 -0.9 -2.4 putative Lipoprotein compare
PP_4546 -0.9 -4.4 ATP-dependent helicase HrpA compare
PP_2646 -0.9 -4.6 conserved protein of unknown function compare
PP_5146 -0.8 -6.6 RNA pyrophosphohydrolase compare
PP_2217 -0.8 -4.9 enoyl-CoA hydratase compare
PP_1317 -0.8 -4.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4475 -0.8 -5.6 succinylglutamate desuccinylase compare
PP_4726 -0.8 -2.6 Chaperone protein DnaJ compare
PP_3946 -0.8 -2.2 HTH-type transcriptional repressor NicR compare
PP_0888 -0.8 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_2214 -0.8 -3.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1217 -0.8 -3.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0960 -0.8 -5.0 phospholipid ABC transporter binding protein compare
PP_1187 -0.8 -5.3 sensor protein compare
PP_4835 -0.8 -1.9 conserved exported protein of unknown function compare
PP_4999 -0.7 -0.6 dihydroorotase-like protein compare
PP_2322 -0.7 -3.0 Major outer membrane lipoprotein compare
PP_0855 -0.7 -1.9 conserved protein of unknown function compare
PP_1318 -0.7 -5.3 Cytochrome b compare
PP_1598 -0.7 -4.6 regulatory intramembrane protein RIP zinc protease compare
PP_2336 -0.7 -3.3 aconitate hydratase 1 compare
PP_0484 -0.7 -4.3 transporter of an unknown substrate compare
PP_4004 -0.7 -3.0 DNA translocase FtsK compare
PP_0111 -0.7 -4.6 Electron transport protein SCO1/SenC compare
PP_0065 -0.7 -2.8 NAD-binding component of TrK potassium transporter compare
PP_1826 -0.7 -3.0 Hydrolase, isochorismatase family compare
PP_t29 -0.7 -2.3 tRNA-Ala compare
PP_2302 -0.7 -3.6 DNA-binding, ATP-dependent protease compare
PP_2000 -0.7 -1.4 amidophosphoribosyl transferase compare
PP_2144 -0.7 -2.2 Transcriptional regulator, TetR family compare
PP_4066 -0.7 -2.7 methylglutaconyl-CoA hydratase compare
PP_1629 -0.7 -4.7 Protein RecA compare
PP_1493 -0.7 -3.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1763 -0.7 -3.5 putative oxidoreductase compare
PP_1097 -0.7 -1.9 Methionine--tRNA ligase compare
PP_4824 -0.7 -4.4 Sensor histidine kinase/response regulator compare
PP_3819 -0.6 -4.8 glutathione reductase (NADPH) compare
PP_0127 -0.6 -2.5 Thiol:disulfide interchange protein compare
PP_4699 -0.6 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2345 -0.6 -3.2 conserved exported protein of unknown function compare
PP_0852 -0.6 -3.9 Transcriptional regulator, Cro/CI family compare
PP_0958 -0.6 -3.9 phospholipid ABC transporter ATP-binding subunit compare
PP_4836 -0.6 -2.4 conserved exported protein of unknown function compare
PP_5748 -0.6 -2.3 cytochrome c heme lyase subunit compare
PP_4268 -0.6 -1.7 nucleoid-associated broad specificity regulator compare
PP_5054 -0.6 -2.1 glutaredoxin 3 compare
PP_2163 -0.6 -4.7 VacJ lipoprotein compare
PP_4373 -0.6 -5.5 Transcriptional regulator FleQ compare
PP_0760 -0.6 -3.3 conserved membrane protein of unknown function compare
PP_1215 -0.6 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_0984 -0.6 -3.8 conserved membrane protein of unknown function compare
PP_1208 -0.6 -1.5 conserved protein of unknown function, SlyX family compare
PP_0126 -0.6 -3.0 Cytochrome c4 compare
PP_1319 -0.6 -3.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_5014 -0.6 -2.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4214 -0.6 -2.9 pyoverdine biosynthesis related protein compare
PP_1719 -0.6 -5.1 Tail-specific protease prc compare
PP_4341 -0.6 -4.9 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4375 -0.6 -4.8 flagellar chaperone, inhibits premature FliC assembly compare
PP_4838 -0.6 -4.9 Outer membrane copper receptor OprC compare
PP_4988 -0.6 -3.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5028 -0.6 -3.4 proline iminopeptidase compare
PP_0961 -0.6 -4.8 toluene tolerance protein compare
PP_4370 -0.6 -4.2 Flagellar hook-basal body complex protein FliE compare
PP_4352 -0.6 -5.1 flagellin export apparatus, substrate specificity protein compare
PP_4707 -0.6 -1.8 OsmY-related protein compare
PP_1045 -0.6 -1.3 Type II secretion pathway protein XcpP compare
PP_1999 -0.6 -2.4 membrane protein required for colicin V production compare
PP_4391 -0.6 -3.2 flagellar basal-body rod protein FlgB compare
PP_4390 -0.6 -4.9 flagellar basal-body rod protein FlgC compare
PP_0125 -0.6 -3.2 putative cytochrome c-type protein compare
PP_4378 -0.6 -5.3 flagellin, filament structural protein compare
PP_4721 -0.6 -3.7 conserved membrane protein of unknown function compare
PP_0435 -0.6 -3.2 Peptidase, M23/M37 family compare
PP_0957 -0.6 -2.0 D-arabinose 5-phosphate isomerase compare
PP_4380 -0.6 -5.0 Flagellar hook-associated protein FlgL compare
PP_5337 -0.6 -3.0 LysR family transcriptional regulator compare
PP_2442 -0.6 -2.3 conserved protein of unknown function, DUF480 family compare
PP_4369 -0.5 -4.9 Flagellar M-ring protein compare
PP_1646 -0.5 -2.9 putative Thioredoxin compare
PP_4941 -0.5 -2.9 conserved exported protein of unknown function compare
PP_3902 -0.5 -2.1 conserved protein of unknown function compare
PP_4365 -0.5 -3.9 Flagellar protein FliJ compare
PP_0166 -0.5 -4.7 HlyD family secretion protein compare
PP_3555 -0.5 -4.0 putative Transmembrane sensor compare
PP_0165 -0.5 -4.8 GGDEF domain protein compare
PP_0251 -0.5 -3.8 conserved membrane protein of unknown function compare
PP_4184 -0.5 -4.5 branched chain amino acid transporter compare
PP_1702 -0.5 -3.1 Recombination-associated protein RdgC compare
PP_4067 -0.5 -3.3 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_0908 -0.5 -4.0 conserved exported protein of unknown function compare
PP_5309 -0.5 -3.1 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1733 -0.5 -1.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_1325 -0.5 -4.4 putative lipoprotein compare
PP_5227 -0.5 -3.7 diaminopimelate decarboxylase compare
PP_4388 -0.5 -4.7 Flagellar hook protein FlgE compare
PP_4917 -0.5 -2.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4209 -0.5 -3.8 ABC export system, membrane fusion protein compare
PP_1214 -0.5 -1.6 putative transcriptional regulatory protein compare
PP_4519 -0.5 -4.5 Agglutination protein compare
PP_0137 -0.5 -4.0 glutamate/aspartate-proton DAACS transporter compare
PP_0959 -0.5 -2.0 phospholipid ABC transporter compare
PP_2355 -0.5 -2.2 Response regulator receiver protein compare
PP_3102 -0.5 -3.2 conserved protein of unknown function compare
PP_4344 -0.5 -4.4 flagellar export pore protein compare
PP_4384 -0.5 -4.5 Flagellar L-ring protein compare
PP_0119 -0.5 -2.8 putative zinc uptake regulation protein ZUR compare
PP_4993 -0.5 -2.2 Glutathione synthetase compare
PP_5051 -0.5 -2.1 conserved protein of unknown function compare
PP_4210 -0.5 -4.4 pyoverdine efflux carrier and ATP binding protein compare
PP_t13 -0.5 -1.9 tRNA-Lys compare
PP_4989 -0.5 -2.1 Protein PilJ compare
PP_0168 -0.5 -4.6 putative surface adhesion protein compare
PP_1871 -0.5 -3.0 Protease HtpX compare
PP_4381 -0.5 -4.4 Flagellar hook-associated protein FlgK compare
PP_4331 -0.5 -3.5 conserved protein of unknown function compare
PP_2597 -0.5 -3.3 conserved protein of unknown function compare
PP_3649 -0.5 -1.9 Transcriptional regulator, GntR family compare
PP_4570 -0.5 -4.3 conserved protein of unknown function compare
PP_0850 -0.5 -3.7 Dual-specificity RNA methyltransferase RlmN compare
PP_4693 -0.5 -1.9 RNA polymerase-binding transcription factor DksA compare
PP_2581 -0.5 -0.7 conserved protein of unknown function compare
PP_4361 -0.5 -3.8 Flagellar hook-length control protein FliK compare
PP_4785 -0.5 -1.8 conserved exported protein of unknown function compare
PP_1362 -0.5 -2.7 pyruvate kinase II compare
PP_2433 -0.5 -0.9 conserved protein of unknown function compare
PP_2945 -0.5 -3.0 putative sensor histidine kinase/response regulator compare
PP_4286 -0.5 -2.9 allantoinase compare
PP_4065 -0.5 -3.8 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_2331 -0.5 -2.9 conserved membrane protein of unknown function compare
PP_4254 -0.5 -1.0 conserved protein of unknown function compare
PP_4720 -0.5 -1.4 putative RNA binding protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms