Experiment set49S112 for Pseudomonas putida KT2440

Compare to:

LB with 6-methoxy-2(3H)-benzoxazolone 1.2 mM

200 most important genes:

  gene name fitness t score description  
PP_0339 -3.1 -7.1 Pyruvate dehydrogenase E1 component compare
PP_0691 -2.9 -3.4 Glutamate 5-kinase compare
PP_4937 -2.6 -16.5 toluene tolerance protein compare
PP_0164 -2.5 -7.7 conserved protein of unknown function compare
PP_0719 -2.5 -2.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4994 -2.5 -1.7 conserved protein of unknown function compare
PP_1898 -2.5 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PP_4126 -2.3 -3.6 NADH-quinone oxidoreductase subunit I compare
PP_4723 -2.1 -3.5 Carbamoyl-phosphate synthase large chain compare
PP_1428 -2.1 -10.2 Sigma factor AlgU negative regulatory protein compare
PP_2378 -2.0 -3.7 Fe/S biogenesis protein NfuA compare
PP_4342 -2.0 -4.8 flagellar synthesis regulator, putative ATPase compare
PP_4902 -2.0 -1.8 Oligoribonuclease compare
PP_2820 -2.0 -3.3 HTH-type transcriptional regulator nfxB compare
PP_2645 -1.7 -13.4 magnesium transporter, ATP-dependent compare
PP_4700 -1.7 -2.8 pantothenate synthetase compare
PP_5328 -1.7 -2.2 putative phosphate transport system permease protein compare
PP_2356 -1.7 -11.3 putative Phytochrome family protein compare
PP_4642 -1.6 -2.1 Cyclic diguanosine monophosphate-binding protein compare
PP_4008 -1.5 -4.7 ATP-dependent serine protease compare
PP_4880 -1.5 -10.0 exoribonuclease R compare
PP_4724 -1.5 -2.2 Carbamoyl-phosphate synthase small chain compare
PP_3519 -1.5 -2.4 putative Lipoprotein compare
PP_4122 -1.5 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0345 -1.5 -6.2 putative Heptose kinase WapP compare
PP_4131 -1.4 -7.9 NADH-quinone oxidoreductase subunit N compare
PP_4058 -1.4 -9.8 1,4-alpha-glucan branching enzyme compare
PP_4124 -1.4 -6.6 NADH-quinone oxidoreductase subunit G compare
PP_4895 -1.4 -1.8 tRNA dimethylallyltransferase compare
PP_4121 -1.3 -6.6 NADH-quinone oxidoreductase subunit C/D compare
PP_0888 -1.3 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_1734 -1.3 -4.1 Probable septum site-determining protein MinC compare
PP_4130 -1.3 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0346 -1.2 -7.7 putative Heptose kinase WapQ compare
PP_2402 -1.2 -2.9 putative Sensor histidine kinase compare
PP_4373 -1.1 -8.4 Transcriptional regulator FleQ compare
PP_2354 -1.1 -8.7 Sensory box histidine kinase/response regulator compare
PP_2322 -1.1 -3.8 Major outer membrane lipoprotein compare
PP_4120 -1.1 -4.5 NADH-quinone oxidoreductase subunit B compare
PP_1232 -1.1 -4.1 conserved exported protein of unknown function compare
PP_0022 -1.1 -1.6 hypothetical protein compare
PP_1055 -1.1 -1.6 Type II secretion pathway protein GspN compare
PP_5327 -1.1 -3.8 putative phosphate ABC transporter, permease subunit compare
PP_4804 -1.1 -1.9 RlpA-like lipoprotein compare
PP_5322 -1.1 -6.5 putative metal ion transporter compare
PP_4375 -1.1 -7.5 flagellar chaperone, inhibits premature FliC assembly compare
PP_0846 -1.0 -2.2 DnaK-like molecular chaperone specific for IscU compare
PP_4213 -1.0 -3.7 putative dipeptidase compare
PP_0856 -1.0 -1.4 conserved lipoprotein of unknown function compare
PP_1733 -1.0 -2.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_4789 -1.0 -4.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4999 -1.0 -0.7 dihydroorotase-like protein compare
PP_2379 -1.0 -4.6 putative cytochrome oxidase biogenesis protein compare
PP_4129 -1.0 -4.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1384 -1.0 -7.4 Probable efflux pump outer membrane protein TtgC compare
PP_4356 -1.0 -2.9 Flagellar protein FliO compare
PP_2903 -0.9 -2.6 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5329 -0.9 -1.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1214 -0.9 -2.1 putative transcriptional regulatory protein compare
PP_4382 -0.9 -6.7 Peptidoglycan hydrolase FlgJ compare
PP_4343 -0.9 -4.2 Flagellar biosynthesis protein FlhF compare
PP_4361 -0.9 -5.0 Flagellar hook-length control protein FliK compare
PP_5084 -0.9 -7.5 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4380 -0.9 -8.1 Flagellar hook-associated protein FlgL compare
PP_4352 -0.9 -7.2 flagellin export apparatus, substrate specificity protein compare
PP_1729 -0.9 -2.1 conserved protein of unknown function compare
PP_4265 -0.9 -2.3 DNA-binding transcriptional dual regulator compare
PP_4386 -0.9 -5.2 flagellar basal-body rod protein FlgF compare
PP_4369 -0.9 -6.1 Flagellar M-ring protein compare
PP_3903 -0.9 -1.7 conserved protein of unknown function compare
PP_0775 -0.9 -1.7 conserved protein of unknown function compare
PP_0872 -0.9 -5.5 Peptide chain release factor 3 compare
PP_4337 -0.9 -4.4 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_5310 -0.9 -4.7 junction-specific ATP-dependent DNA helicase compare
PP_4388 -0.8 -6.9 Flagellar hook protein FlgE compare
PP_4993 -0.8 -3.3 Glutathione synthetase compare
PP_4836 -0.8 -2.6 conserved exported protein of unknown function compare
PP_4378 -0.8 -7.4 flagellin, filament structural protein compare
PP_2646 -0.8 -2.7 conserved protein of unknown function compare
PP_4368 -0.8 -5.9 flagellar motor switch protein compare
PP_4396 -0.8 -4.4 conserved protein of unknown function compare
PP_1994 -0.8 -2.4 tRNA pseudouridine (38-40)synthase compare
PP_4376 -0.8 -7.4 flagellar filament capping protein compare
PP_4390 -0.8 -6.8 flagellar basal-body rod protein FlgC compare
PP_4359 -0.8 -5.8 Flagellar protein FliL compare
PP_4344 -0.8 -6.6 flagellar export pore protein compare
PP_0760 -0.8 -4.0 conserved membrane protein of unknown function compare
PP_1224 -0.8 -4.8 periplasmic subunit of the TolQRA transport system compare
PP_1783 -0.8 -2.1 dTDP-glucose pyrophosphorylase compare
PP_4358 -0.8 -4.6 flagellar synthesis, switching and energizing component compare
PP_2147 -0.8 -2.6 conserved exported protein of unknown function compare
PP_4391 -0.8 -5.0 flagellar basal-body rod protein FlgB compare
PP_4381 -0.8 -6.6 Flagellar hook-associated protein FlgK compare
PP_2302 -0.8 -4.3 DNA-binding, ATP-dependent protease compare
PP_5456 -0.8 -1.2 conserved protein of unknown function compare
PP_5486 -0.8 -1.1 conserved protein of unknown function compare
PP_5051 -0.8 -1.9 conserved protein of unknown function compare
PP_0406 -0.8 -2.5 Nucleotidyltransferase family protein compare
PP_2907 -0.8 -2.8 DNA-binding response regulator compare
PP_4098 -0.8 -2.1 UvrABC system protein C compare
PP_5146 -0.8 -5.1 RNA pyrophosphohydrolase compare
PP_4354 -0.8 -3.1 flagellar export apparatus subunit compare
PP_4370 -0.7 -3.5 Flagellar hook-basal body complex protein FliE compare
PP_4964 -0.7 -1.7 D-erythrose 4-phosphate dehydrogenase compare
PP_0984 -0.7 -4.0 conserved membrane protein of unknown function compare
PP_4366 -0.7 -5.8 flagellum-specific ATP synthase compare
PP_4904 -0.7 -5.0 Flagellar motor rotation protein compare
PP_5216 -0.7 -1.3 exopolyphosphatase compare
PP_4475 -0.7 -4.5 succinylglutamate desuccinylase compare
PP_5453 -0.7 -1.6 conserved protein of unknown function compare
PP_0401 -0.7 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PP_4389 -0.7 -5.6 Flagellar basal-body rod modification protein FlgD compare
PP_4253 -0.7 -2.9 cytochrome c oxidase subunit, cbb3-type compare
PP_2031 -0.7 -1.5 conserved protein of unknown function compare
PP_2280 -0.7 -1.5 conserved protein of unknown function compare
PP_3916 -0.7 -2.3 conserved protein of unknown function compare
PP_0833 -0.7 -1.2 queuine tRNA-ribosyltransferase compare
PP_2459 -0.7 -0.9 ribose pyranase compare
PP_4385 -0.7 -4.4 flagellar basal-body rod protein FlgG compare
PP_4892 -0.7 -4.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4341 -0.7 -4.7 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_1319 -0.7 -4.0 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4482 -0.7 -3.2 Transcriptional regulator, AraC family compare
PP_4377 -0.7 -2.3 putative Flagellin FlaG compare
PP_0165 -0.7 -5.4 GGDEF domain protein compare
PP_4394 -0.7 -4.2 flagella basal body P-ring formation protein compare
PP_0484 -0.6 -3.0 transporter of an unknown substrate compare
PP_5337 -0.6 -3.0 LysR family transcriptional regulator compare
PP_4941 -0.6 -3.1 conserved exported protein of unknown function compare
PP_1187 -0.6 -4.4 sensor protein compare
PP_2345 -0.6 -1.8 conserved exported protein of unknown function compare
PP_4519 -0.6 -5.4 Agglutination protein compare
PP_1317 -0.6 -2.4 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1763 -0.6 -2.3 putative oxidoreductase compare
PP_5295 -0.6 -1.9 conserved protein of unknown function compare
PP_3840 -0.6 -1.4 conserved protein of unknown function compare
PP_4696 -0.6 -4.1 Nitrogen regulation protein NR(I) compare
PP_0848 -0.6 -1.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4379 -0.6 -3.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0607 -0.6 -1.3 putative Type IV pili biogenesis protein FimT compare
PP_0119 -0.6 -2.4 putative zinc uptake regulation protein ZUR compare
PP_0166 -0.6 -4.7 HlyD family secretion protein compare
PP_1598 -0.6 -3.3 regulatory intramembrane protein RIP zinc protease compare
PP_2718 -0.6 -2.4 arsenic resistance transcriptional regulator compare
PP_3320 -0.6 -2.6 conserved protein of unknown function compare
PP_5095 -0.6 -1.3 pyrroline-5-carboxylate reductase compare
PP_4720 -0.6 -1.7 putative RNA binding protein compare
PP_1325 -0.6 -4.5 putative lipoprotein compare
PP_4365 -0.6 -3.2 Flagellar protein FliJ compare
PP_4824 -0.6 -3.4 Sensor histidine kinase/response regulator compare
PP_2878 -0.6 -1.3 conserved protein of unknown function compare
PP_4004 -0.6 -2.3 DNA translocase FtsK compare
PP_4891 -0.6 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0167 -0.6 -5.2 Toxin secretion ATP-binding protein compare
PP_4384 -0.6 -4.6 Flagellar L-ring protein compare
PP_4332 -0.6 -3.4 Chemotaxis protein CheW compare
PP_1318 -0.6 -4.0 Cytochrome b compare
PP_5039 -0.6 -2.4 conserved protein of unknown function compare
PP_5090 -0.6 -2.2 putative cell division protein compare
PP_0168 -0.6 -5.2 putative surface adhesion protein compare
PP_0065 -0.6 -1.7 NAD-binding component of TrK potassium transporter compare
PP_1623 -0.6 -3.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_3899 -0.6 -1.5 conserved protein of unknown function, hicB family compare
PP_1719 -0.6 -4.1 Tail-specific protease prc compare
PP_3110 -0.5 -1.9 protein of unknown function compare
PP_2668 -0.5 -1.4 ABC efflux transporter, ATP-binding protein compare
PP_2000 -0.5 -1.2 amidophosphoribosyl transferase compare
PP_1385 -0.5 -4.8 Probable efflux pump membrane transporter TtgB compare
PP_4353 -0.5 -4.3 Flagellar biosynthetic protein fliR compare
PP_4367 -0.5 -2.2 Flagellar assembly protein FliH compare
PP_5230 -0.5 -2.1 Tyrosine recombinase XerC compare
PP_4333 -0.5 -3.5 CheW domain protein compare
PP_5350 -0.5 -1.8 Transcriptional regulator, RpiR family compare
PP_4320 -0.5 -2.7 cytochrome c-type biogenesis protein compare
PP_0962 -0.5 -1.6 toluene-tolerance protein compare
PP_1128 -0.5 -1.5 OmpA family protein compare
PP_0738 -0.5 -2.1 conserved protein of unknown function compare
PP_3649 -0.5 -1.8 Transcriptional regulator, GntR family compare
PP_4340 -0.5 -3.0 response regulator for chemotactic signal transduction compare
PP_4355 -0.5 -1.9 flagellar export apparatus subunit compare
PP_4331 -0.5 -2.8 conserved protein of unknown function compare
PP_3989 -0.5 -2.3 DNA-cytosine methyltransferase compare
PP_3819 -0.5 -3.4 glutathione reductase (NADPH) compare
PP_2581 -0.5 -0.7 conserved protein of unknown function compare
PP_4721 -0.5 -3.2 conserved membrane protein of unknown function compare
PP_3640 -0.5 -1.8 Transcriptional regulator, AraC family compare
PP_1536 -0.5 -1.3 conserved protein of unknown function compare
PP_0276 -0.5 -0.9 Transcriptional regulator, Cro/CI family compare
PP_0125 -0.5 -2.7 putative cytochrome c-type protein compare
PP_0949 -0.5 -2.5 putative ATP-binding protein UPF0042 compare
PP_4150 -0.5 -2.6 microcin C transporter - ATP binding subunit compare
PP_2029 -0.5 -1.6 von Willebrand factor type A domain protein compare
PP_1912 -0.5 -2.5 Phosphate acyltransferase compare
PP_1268 -0.5 -1.5 putative HtrA suppressor protein sohA compare
PP_2426 -0.5 -2.0 coniferyl alcohol dehydrogenase compare
PP_4215 -0.5 -2.5 pyoverdine biosynthesis related protein compare
PP_0887 -0.5 -3.1 Sensor histidine kinase compare
PP_5294 -0.5 -3.1 Ribonuclease PH compare
PP_1097 -0.5 -1.0 Methionine--tRNA ligase compare
PP_2214 -0.5 -3.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms