Experiment set49S111 for Pseudomonas putida KT2440

Compare to:

LB with 6-methoxy-2(3H)-benzoxazolone 0.5 mM

200 most important genes:

  gene name fitness t score description  
PP_1898 -2.7 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PP_4994 -2.3 -2.6 conserved protein of unknown function compare
PP_0691 -2.2 -3.4 Glutamate 5-kinase compare
PP_4937 -2.1 -14.0 toluene tolerance protein compare
PP_0164 -2.1 -10.9 conserved protein of unknown function compare
PP_2645 -1.9 -14.5 magnesium transporter, ATP-dependent compare
PP_4723 -1.8 -4.0 Carbamoyl-phosphate synthase large chain compare
PP_0833 -1.8 -2.6 queuine tRNA-ribosyltransferase compare
PP_4126 -1.6 -2.1 NADH-quinone oxidoreductase subunit I compare
PP_0339 -1.6 -6.1 Pyruvate dehydrogenase E1 component compare
PP_0856 -1.5 -1.1 conserved lipoprotein of unknown function compare
PP_4058 -1.5 -11.7 1,4-alpha-glucan branching enzyme compare
PP_2820 -1.4 -4.0 HTH-type transcriptional regulator nfxB compare
PP_4902 -1.4 -1.8 Oligoribonuclease compare
PP_4122 -1.4 -4.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4880 -1.4 -8.4 exoribonuclease R compare
PP_4121 -1.3 -6.8 NADH-quinone oxidoreductase subunit C/D compare
PP_2322 -1.3 -3.6 Major outer membrane lipoprotein compare
PP_4383 -1.3 -7.4 Flagellar P-ring protein compare
PP_2356 -1.2 -9.2 putative Phytochrome family protein compare
PP_4356 -1.2 -7.1 Flagellar protein FliO compare
PP_4341 -1.2 -8.6 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4391 -1.2 -5.9 flagellar basal-body rod protein FlgB compare
PP_1733 -1.2 -3.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_4129 -1.2 -5.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2646 -1.2 -4.5 conserved protein of unknown function compare
PP_4724 -1.2 -2.1 Carbamoyl-phosphate synthase small chain compare
PP_0888 -1.2 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_4366 -1.2 -10.0 flagellum-specific ATP synthase compare
PP_4365 -1.2 -7.9 Flagellar protein FliJ compare
PP_4375 -1.2 -8.7 flagellar chaperone, inhibits premature FliC assembly compare
PP_4999 -1.1 -0.7 dihydroorotase-like protein compare
PP_4380 -1.1 -10.1 Flagellar hook-associated protein FlgL compare
PP_4369 -1.1 -7.9 Flagellar M-ring protein compare
PP_4381 -1.1 -9.7 Flagellar hook-associated protein FlgK compare
PP_4124 -1.1 -6.0 NADH-quinone oxidoreductase subunit G compare
PP_4378 -1.1 -10.1 flagellin, filament structural protein compare
PP_4131 -1.1 -6.9 NADH-quinone oxidoreductase subunit N compare
PP_2280 -1.1 -4.1 conserved protein of unknown function compare
PP_4390 -1.1 -9.2 flagellar basal-body rod protein FlgC compare
PP_4895 -1.1 -2.1 tRNA dimethylallyltransferase compare
PP_4361 -1.1 -6.1 Flagellar hook-length control protein FliK compare
PP_4382 -1.1 -8.1 Peptidoglycan hydrolase FlgJ compare
PP_1783 -1.1 -2.9 dTDP-glucose pyrophosphorylase compare
PP_4376 -1.1 -9.3 flagellar filament capping protein compare
PP_2378 -1.1 -3.5 Fe/S biogenesis protein NfuA compare
PP_4370 -1.1 -5.8 Flagellar hook-basal body complex protein FliE compare
PP_4388 -1.1 -9.0 Flagellar hook protein FlgE compare
PP_4358 -1.1 -8.8 flagellar synthesis, switching and energizing component compare
PP_2903 -1.1 -3.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4352 -1.0 -8.9 flagellin export apparatus, substrate specificity protein compare
PP_4386 -1.0 -7.0 flagellar basal-body rod protein FlgF compare
PP_2402 -1.0 -3.4 putative Sensor histidine kinase compare
PP_4385 -1.0 -6.7 flagellar basal-body rod protein FlgG compare
PP_4396 -1.0 -4.5 conserved protein of unknown function compare
PP_4384 -1.0 -8.3 Flagellar L-ring protein compare
PP_4367 -1.0 -4.1 Flagellar assembly protein FliH compare
PP_4353 -1.0 -7.8 Flagellar biosynthetic protein fliR compare
PP_4344 -1.0 -8.6 flagellar export pore protein compare
PP_0401 -1.0 -2.7 Ribosomal RNA small subunit methyltransferase A compare
PP_1428 -1.0 -5.1 Sigma factor AlgU negative regulatory protein compare
PP_4130 -0.9 -4.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5456 -0.9 -2.0 conserved protein of unknown function compare
PP_0760 -0.9 -3.3 conserved membrane protein of unknown function compare
PP_4355 -0.9 -4.0 flagellar export apparatus subunit compare
PP_4368 -0.9 -6.0 flagellar motor switch protein compare
PP_2000 -0.9 -1.8 amidophosphoribosyl transferase compare
PP_5310 -0.9 -6.3 junction-specific ATP-dependent DNA helicase compare
PP_4789 -0.9 -3.8 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4389 -0.9 -5.7 Flagellar basal-body rod modification protein FlgD compare
PP_4265 -0.9 -2.6 DNA-binding transcriptional dual regulator compare
PP_4804 -0.9 -1.7 RlpA-like lipoprotein compare
PP_1734 -0.9 -3.4 Probable septum site-determining protein MinC compare
PP_0346 -0.9 -6.2 putative Heptose kinase WapQ compare
PP_5328 -0.9 -1.6 putative phosphate transport system permease protein compare
PP_5329 -0.8 -1.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4120 -0.8 -3.6 NADH-quinone oxidoreductase subunit B compare
PP_4354 -0.8 -4.7 flagellar export apparatus subunit compare
PP_4008 -0.8 -3.3 ATP-dependent serine protease compare
PP_1319 -0.8 -5.0 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0293 -0.8 -3.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3519 -0.8 -2.0 putative Lipoprotein compare
PP_0345 -0.8 -5.1 putative Heptose kinase WapP compare
PP_4337 -0.8 -5.7 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4359 -0.8 -5.2 Flagellar protein FliL compare
PP_1224 -0.8 -5.0 periplasmic subunit of the TolQRA transport system compare
PP_1215 -0.8 -2.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_1344 -0.8 -1.7 conserved protein of unknown function compare
PP_2354 -0.8 -6.4 Sensory box histidine kinase/response regulator compare
PP_1702 -0.8 -4.4 Recombination-associated protein RdgC compare
PP_4342 -0.8 -2.5 flagellar synthesis regulator, putative ATPase compare
PP_4379 -0.8 -4.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4394 -0.8 -6.2 flagella basal body P-ring formation protein compare
PP_0393 -0.8 -2.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0719 -0.8 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4204 -0.8 -3.2 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4836 -0.8 -2.8 conserved exported protein of unknown function compare
PP_5216 -0.7 -1.7 exopolyphosphatase compare
PP_0872 -0.7 -5.3 Peptide chain release factor 3 compare
PP_0126 -0.7 -3.0 Cytochrome c4 compare
PP_5084 -0.7 -6.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4332 -0.7 -2.4 Chemotaxis protein CheW compare
PP_t29 -0.7 -2.4 tRNA-Ala compare
PP_4475 -0.7 -4.5 succinylglutamate desuccinylase compare
PP_4988 -0.7 -4.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1097 -0.7 -1.2 Methionine--tRNA ligase compare
PP_5322 -0.7 -4.7 putative metal ion transporter compare
PP_4941 -0.7 -3.6 conserved exported protein of unknown function compare
PP_0513 -0.7 -3.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1912 -0.7 -4.3 Phosphate acyltransferase compare
PP_1719 -0.7 -5.7 Tail-specific protease prc compare
PP_2336 -0.7 -2.5 aconitate hydratase 1 compare
PP_1176 -0.7 -2.0 conserved protein of unknown function compare
PP_1763 -0.7 -2.9 putative oxidoreductase compare
PP_1187 -0.7 -4.8 sensor protein compare
PP_4343 -0.7 -4.1 Flagellar biosynthesis protein FlhF compare
PP_1318 -0.7 -4.7 Cytochrome b compare
PP_4989 -0.7 -3.0 Protein PilJ compare
PP_5350 -0.7 -2.7 Transcriptional regulator, RpiR family compare
PP_1317 -0.6 -3.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0063 -0.6 -3.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1128 -0.6 -2.2 OmpA family protein compare
PP_4700 -0.6 -1.5 pantothenate synthetase compare
PP_1493 -0.6 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4333 -0.6 -3.7 CheW domain protein compare
PP_2144 -0.6 -2.6 Transcriptional regulator, TetR family compare
PP_0119 -0.6 -3.2 putative zinc uptake regulation protein ZUR compare
PP_0274 -0.6 -1.7 putative transcriptional regulator containing HTH domain compare
PP_0232 -0.6 -1.6 ATP-binding taurine transporter subunit compare
PP_1232 -0.6 -2.9 conserved exported protein of unknown function compare
PP_4793 -0.6 -2.7 conserved protein of unknown function compare
PP_4904 -0.6 -4.7 Flagellar motor rotation protein compare
PP_4726 -0.6 -1.5 Chaperone protein DnaJ compare
PP_4696 -0.6 -4.3 Nitrogen regulation protein NR(I) compare
PP_5146 -0.6 -4.0 RNA pyrophosphohydrolase compare
PP_4482 -0.6 -3.2 Transcriptional regulator, AraC family compare
PP_4891 -0.6 -3.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4993 -0.6 -2.6 Glutathione synthetase compare
PP_4334 -0.6 -4.4 ParA family protein compare
PP_2302 -0.6 -3.9 DNA-binding, ATP-dependent protease compare
PP_0832 -0.6 -2.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1198 -0.6 -2.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4340 -0.6 -3.3 response regulator for chemotactic signal transduction compare
PP_3916 -0.6 -2.2 conserved protein of unknown function compare
PP_3946 -0.6 -1.4 HTH-type transcriptional repressor NicR compare
PP_1994 -0.6 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_3819 -0.5 -4.1 glutathione reductase (NADPH) compare
PP_5486 -0.5 -1.7 conserved protein of unknown function compare
PP_5028 -0.5 -3.0 proline iminopeptidase compare
PP_4004 -0.5 -2.6 DNA translocase FtsK compare
PP_1598 -0.5 -3.2 regulatory intramembrane protein RIP zinc protease compare
PP_0949 -0.5 -3.2 putative ATP-binding protein UPF0042 compare
PP_4338 -0.5 -4.0 Chemotaxis histidine kinase CheA compare
PP_2944 -0.5 -4.6 Sensor histidine kinase compare
PP_5327 -0.5 -2.2 putative phosphate ABC transporter, permease subunit compare
PP_5393 -0.5 -1.1 putative metal-binding chaperone compare
PP_1774 -0.5 -2.1 conserved exported protein of unknown function compare
PP_1186 -0.5 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_2907 -0.5 -1.9 DNA-binding response regulator compare
PP_4720 -0.5 -1.5 putative RNA binding protein compare
PP_0566 -0.5 -1.1 translation-related factor compare
PP_4331 -0.5 -3.5 conserved protein of unknown function compare
PP_2337 -0.5 -1.7 aconitate isomerase compare
PP_4917 -0.5 -2.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5313 -0.5 -2.0 DNA-binding protein HU-alpha compare
PP_0435 -0.5 -3.0 Peptidase, M23/M37 family compare
PP_0398 -0.5 -1.4 Thiosulfate sulfurtransferase GlpE compare
PP_4392 -0.5 -3.9 chemotaxis protein methyltransferase compare
PP_1512 -0.5 -2.2 conserved protein of unknown function compare
PP_0065 -0.5 -2.3 NAD-binding component of TrK potassium transporter compare
PP_4320 -0.5 -2.4 cytochrome c-type biogenesis protein compare
PP_2217 -0.5 -1.8 enoyl-CoA hydratase compare
PP_4944 -0.5 -1.9 Carbamoyltransferase compare
PP_4362 -0.5 -2.7 conserved protein of unknown function compare
PP_1268 -0.5 -1.7 putative HtrA suppressor protein sohA compare
PP_4964 -0.5 -1.4 D-erythrose 4-phosphate dehydrogenase compare
PP_3102 -0.5 -2.7 conserved protein of unknown function compare
PP_3320 -0.5 -1.9 conserved protein of unknown function compare
PP_4286 -0.5 -3.1 allantoinase compare
PP_5583 -0.5 -1.9 conserved protein of unknown function compare
PP_2345 -0.5 -2.6 conserved exported protein of unknown function compare
PP_4642 -0.5 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_4098 -0.5 -1.7 UvrABC system protein C compare
PP_1623 -0.5 -3.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_2379 -0.5 -2.5 putative cytochrome oxidase biogenesis protein compare
PP_2459 -0.5 -1.5 ribose pyranase compare
PP_5051 -0.5 -1.4 conserved protein of unknown function compare
PP_5162 -0.5 -2.8 conserved exported protein of unknown function compare
PP_4892 -0.5 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5338 -0.5 -2.1 aspartate ammonia-lyase compare
PP_0003 -0.5 -2.3 16S RNA methyltransferase compare
PP_1826 -0.5 -2.6 Hydrolase, isochorismatase family compare
PP_3840 -0.5 -1.3 conserved protein of unknown function compare
PP_0246 -0.5 -1.9 two-component system DNA-binding response transcriptional dual regulator compare
PP_2942 -0.5 -4.1 Response regulator compare
PP_2945 -0.5 -2.1 putative sensor histidine kinase/response regulator compare
PP_2028 -0.4 -2.8 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2025 -0.4 -2.4 Exonuclease SbcD compare
PP_4546 -0.4 -2.4 ATP-dependent helicase HrpA compare
PP_3244 -0.4 -2.2 Magnesium transporter, MgtC family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms