Experiment set49S109 for Pseudomonas putida KT2440

Compare to:

LB with Apigenin 50 ug/ml

200 most important genes:

  gene name fitness t score description  
PP_4724 -2.4 -2.8 Carbamoyl-phosphate synthase small chain compare
PP_2645 -2.0 -15.8 magnesium transporter, ATP-dependent compare
PP_0164 -1.9 -10.3 conserved protein of unknown function compare
PP_4723 -1.9 -4.4 Carbamoyl-phosphate synthase large chain compare
PP_5329 -1.8 -3.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4265 -1.7 -3.8 DNA-binding transcriptional dual regulator compare
PP_4994 -1.7 -2.6 conserved protein of unknown function compare
PP_0833 -1.6 -2.5 queuine tRNA-ribosyltransferase compare
PP_4880 -1.5 -10.2 exoribonuclease R compare
PP_4902 -1.4 -2.1 Oligoribonuclease compare
PP_4058 -1.4 -11.5 1,4-alpha-glucan branching enzyme compare
PP_2322 -1.4 -5.0 Major outer membrane lipoprotein compare
PP_4700 -1.3 -2.7 pantothenate synthetase compare
PP_4895 -1.3 -2.6 tRNA dimethylallyltransferase compare
PP_0719 -1.3 -1.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1898 -1.3 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PP_0393 -1.2 -3.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0856 -1.2 -1.7 conserved lipoprotein of unknown function compare
PP_4937 -1.2 -7.9 toluene tolerance protein compare
PP_4008 -1.1 -4.3 ATP-dependent serine protease compare
PP_1493 -1.1 -3.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2646 -1.1 -5.6 conserved protein of unknown function compare
PP_4804 -1.0 -1.9 RlpA-like lipoprotein compare
PP_4379 -1.0 -6.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2000 -1.0 -1.9 amidophosphoribosyl transferase compare
PP_0691 -1.0 -2.3 Glutamate 5-kinase compare
PP_0406 -1.0 -3.1 Nucleotidyltransferase family protein compare
PP_3916 -1.0 -2.7 conserved protein of unknown function compare
PP_0760 -0.9 -5.6 conserved membrane protein of unknown function compare
PP_5322 -0.9 -6.7 putative metal ion transporter compare
PP_1428 -0.9 -7.1 Sigma factor AlgU negative regulatory protein compare
PP_1734 -0.9 -3.1 Probable septum site-determining protein MinC compare
PP_4204 -0.9 -3.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2356 -0.9 -7.5 putative Phytochrome family protein compare
PP_0218 -0.9 -7.4 Sensory box protein compare
PP_1912 -0.9 -4.8 Phosphate acyltransferase compare
PP_0339 -0.9 -3.7 Pyruvate dehydrogenase E1 component compare
PP_4999 -0.8 -0.7 dihydroorotase-like protein compare
PP_1598 -0.8 -4.9 regulatory intramembrane protein RIP zinc protease compare
PP_1215 -0.8 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_1214 -0.8 -2.2 putative transcriptional regulatory protein compare
PP_1142 -0.8 -1.9 conserved protein of unknown function compare
PP_1763 -0.8 -3.7 putative oxidoreductase compare
PP_4789 -0.8 -4.5 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4942 -0.8 -1.9 conserved protein of unknown function compare
PP_1128 -0.8 -1.9 OmpA family protein compare
PP_4131 -0.8 -5.2 NADH-quinone oxidoreductase subunit N compare
PP_4126 -0.8 -2.2 NADH-quinone oxidoreductase subunit I compare
PP_4261 -0.8 -4.8 cation-transporting P-type ATPase compare
PP_5216 -0.8 -2.3 exopolyphosphatase compare
PP_4129 -0.8 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2378 -0.8 -2.8 Fe/S biogenesis protein NfuA compare
PP_5486 -0.7 -2.0 conserved protein of unknown function compare
PP_4364 -0.7 -5.6 putative Anti-sigma F factor antagonist compare
PP_4262 -0.7 -2.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1318 -0.7 -5.2 Cytochrome b compare
PP_1783 -0.7 -2.0 dTDP-glucose pyrophosphorylase compare
PP_5328 -0.7 -1.4 putative phosphate transport system permease protein compare
PP_5039 -0.7 -3.7 conserved protein of unknown function compare
PP_4122 -0.7 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4993 -0.7 -3.0 Glutathione synthetase compare
PP_0735 -0.7 -2.1 molybdopterin-synthase adenylyltransferase compare
PP_0832 -0.7 -3.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4835 -0.7 -2.0 conserved exported protein of unknown function compare
PP_4130 -0.6 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_t29 -0.6 -2.3 tRNA-Ala compare
PP_3519 -0.6 -1.7 putative Lipoprotein compare
PP_4532 -0.6 -2.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4121 -0.6 -4.4 NADH-quinone oxidoreductase subunit C/D compare
PP_5310 -0.6 -4.3 junction-specific ATP-dependent DNA helicase compare
PP_2414 -0.6 -1.6 conserved exported protein of unknown function compare
PP_0065 -0.6 -3.0 NAD-binding component of TrK potassium transporter compare
PP_1224 -0.6 -3.6 periplasmic subunit of the TolQRA transport system compare
PP_4642 -0.6 -1.3 Cyclic diguanosine monophosphate-binding protein compare
PP_1232 -0.6 -3.0 conserved exported protein of unknown function compare
PP_4120 -0.6 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_4342 -0.6 -2.5 flagellar synthesis regulator, putative ATPase compare
PP_5014 -0.6 -1.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_2354 -0.6 -4.8 Sensory box histidine kinase/response regulator compare
PP_1319 -0.6 -3.9 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_2945 -0.6 -3.7 putative sensor histidine kinase/response regulator compare
PP_0887 -0.6 -4.2 Sensor histidine kinase compare
PP_4989 -0.6 -2.7 Protein PilJ compare
PP_5748 -0.6 -1.9 cytochrome c heme lyase subunit compare
PP_1719 -0.6 -4.8 Tail-specific protease prc compare
PP_1860 -0.6 -2.3 Organic hydroperoxide resistance transcriptional regulator compare
PP_2402 -0.6 -1.7 putative Sensor histidine kinase compare
PP_1328 -0.6 -2.1 Protein MraZ compare
PP_0022 -0.6 -1.2 hypothetical protein compare
PP_4726 -0.6 -1.5 Chaperone protein DnaJ compare
PP_4879 -0.6 -3.2 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_4988 -0.6 -3.5 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5100 -0.6 -2.8 dITP/XTP pyrophosphatase compare
PP_4874 -0.5 -1.0 50S ribosomal protein L9 compare
PP_0345 -0.5 -3.3 putative Heptose kinase WapP compare
PP_4546 -0.5 -3.0 ATP-dependent helicase HrpA compare
PP_5456 -0.5 -0.7 conserved protein of unknown function compare
PP_4696 -0.5 -3.8 Nitrogen regulation protein NR(I) compare
PP_3555 -0.5 -3.7 putative Transmembrane sensor compare
PP_2718 -0.5 -2.1 arsenic resistance transcriptional regulator compare
PP_4320 -0.5 -3.3 cytochrome c-type biogenesis protein compare
PP_t12 -0.5 -1.1 tRNA-Thr compare
PP_5350 -0.5 -2.4 Transcriptional regulator, RpiR family compare
PP_4263 -0.5 -2.2 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_3819 -0.5 -3.9 glutathione reductase (NADPH) compare
PP_3903 -0.5 -1.7 conserved protein of unknown function compare
PP_0959 -0.5 -2.1 phospholipid ABC transporter compare
PP_1317 -0.5 -3.0 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0848 -0.5 -1.4 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0919 -0.5 -1.6 conserved protein of unknown function compare
PP_3902 -0.5 -2.3 conserved protein of unknown function compare
PP_4124 -0.5 -3.0 NADH-quinone oxidoreductase subunit G compare
PP_3899 -0.5 -2.3 conserved protein of unknown function, hicB family compare
PP_0872 -0.5 -3.7 Peptide chain release factor 3 compare
PP_4066 -0.5 -2.5 methylglutaconyl-CoA hydratase compare
PP_2029 -0.5 -2.0 von Willebrand factor type A domain protein compare
PP_4098 -0.5 -1.4 UvrABC system protein C compare
PP_4682 -0.5 -2.0 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_2581 -0.5 -1.6 conserved protein of unknown function compare
PP_2280 -0.5 -1.6 conserved protein of unknown function compare
PP_5198 -0.5 -2.5 conserved protein of unknown function compare
PP_5294 -0.5 -2.9 Ribonuclease PH compare
PP_4250 -0.5 -4.0 cytochrome c oxidase subunit I, cbb3-type compare
PP_0232 -0.5 -1.2 ATP-binding taurine transporter subunit compare
PP_4207 -0.5 -1.9 conserved protein of unknown function compare
PP_3064 -0.5 -1.0 Phage tail protein compare
PP_2942 -0.5 -4.1 Response regulator compare
PP_1629 -0.5 -3.6 Protein RecA compare
PP_0087 -0.5 -2.4 conserved exported protein of unknown function compare
PP_5028 -0.5 -2.7 proline iminopeptidase compare
PP_5327 -0.5 -2.1 putative phosphate ABC transporter, permease subunit compare
PP_2144 -0.5 -2.2 Transcriptional regulator, TetR family compare
PP_4251 -0.5 -2.5 cytochrome c oxidase subunit, cbb3-type compare
PP_1702 -0.5 -2.8 Recombination-associated protein RdgC compare
PP_0346 -0.5 -3.2 putative Heptose kinase WapQ compare
PP_5162 -0.5 -2.5 conserved exported protein of unknown function compare
PP_4941 -0.4 -2.5 conserved exported protein of unknown function compare
PP_4482 -0.4 -2.4 Transcriptional regulator, AraC family compare
PP_0003 -0.4 -2.0 16S RNA methyltransferase compare
PP_4475 -0.4 -3.0 succinylglutamate desuccinylase compare
PP_0640 -0.4 -2.0 conserved protein of unknown function compare
PP_4964 -0.4 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0111 -0.4 -3.6 Electron transport protein SCO1/SenC compare
PP_0949 -0.4 -2.7 putative ATP-binding protein UPF0042 compare
PP_2074 -0.4 -1.5 Transcriptional regulator, LysR family compare
PP_1999 -0.4 -1.8 membrane protein required for colicin V production compare
PP_2147 -0.4 -1.5 conserved exported protein of unknown function compare
PP_0293 -0.4 -1.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4478 -0.4 -2.9 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_5583 -0.4 -1.7 conserved protein of unknown function compare
PP_4836 -0.4 -2.2 conserved exported protein of unknown function compare
PP_2944 -0.4 -3.7 Sensor histidine kinase compare
PP_4909 -0.4 -3.1 phosphoserine phosphatase compare
PP_4009 -0.4 -1.9 ATP-dependent Clp protease adapter protein ClpS compare
PP_1733 -0.4 -1.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_1131 -0.4 -1.8 outer membrane lipoprotein compare
PP_4581 -0.4 -1.7 putative amidotransferase compare
PP_3190 -0.4 -1.4 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_1729 -0.4 -1.5 conserved protein of unknown function compare
PP_4004 -0.4 -2.2 DNA translocase FtsK compare
PP_2907 -0.4 -1.9 DNA-binding response regulator compare
PP_2302 -0.4 -2.6 DNA-binding, ATP-dependent protease compare
PP_5045 -0.4 -1.9 tRNA sulfurtransferase compare
PP_2820 -0.4 -2.3 HTH-type transcriptional regulator nfxB compare
PP_0127 -0.4 -1.8 Thiol:disulfide interchange protein compare
PP_2313 -0.4 -1.5 conserved membrane protein of unknown function compare
PP_2217 -0.4 -1.9 enoyl-CoA hydratase compare
PP_0119 -0.4 -2.5 putative zinc uptake regulation protein ZUR compare
PP_1554 -0.4 -1.5 conserved protein of unknown function compare
PP_2456 -0.4 -2.3 D-ribose ABC transporter - permease subunit compare
PP_4793 -0.4 -1.2 conserved protein of unknown function compare
PP_4875 -0.4 -2.2 conserved membrane protein of unknown function compare
PP_1822 -0.4 -2.3 conserved protein of unknown function compare
PP_0839 -0.4 -1.0 tRNA Cm32/Um32 methyltransferase compare
PP_5537 -0.4 -1.5 conserved membrane protein of unknown function compare
PP_4362 -0.4 -2.4 conserved protein of unknown function compare
PP_0125 -0.4 -1.7 putative cytochrome c-type protein compare
PP_1589 -0.4 -3.3 uridylyltransferase compare
PP_1366 -0.4 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_4944 -0.4 -1.4 Carbamoyltransferase compare
PP_2769 -0.4 -2.1 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_0484 -0.4 -2.8 transporter of an unknown substrate compare
PP_1268 -0.4 -0.9 putative HtrA suppressor protein sohA compare
PP_5063 -0.4 -2.0 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_1187 -0.4 -2.9 sensor protein compare
PP_2336 -0.4 -1.8 aconitate hydratase 1 compare
PP_4260 -0.4 -1.9 conserved protein of unknown function compare
PP_5714 -0.4 -1.7 conserved protein of unknown function compare
PP_0850 -0.4 -2.5 Dual-specificity RNA methyltransferase RlmN compare
PP_4212 -0.4 -1.3 pyoverdine biosynthesis related protein compare
PP_0846 -0.4 -0.6 DnaK-like molecular chaperone specific for IscU compare
PP_0775 -0.4 -0.7 conserved protein of unknown function compare
PP_5359 -0.4 -1.6 CobW/P47K family protein compare
PP_3874 -0.4 -1.7 conserved protein of unknown function compare
PP_4722 -0.4 -2.1 Transcription elongation factor GreA compare
PP_5008 -0.4 -0.8 Poly granule-associated protein compare
PP_1049 -0.4 -1.7 putative protein secretion protein for export compare
PP_0711 -0.4 -1.8 putative hydrolase compare
PP_2459 -0.4 -0.8 ribose pyranase compare
PP_1669 -0.4 -2.2 NLP/P60 family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Apigenin across organisms