Experiment set49S108 for Pseudomonas putida KT2440

Compare to:

LB with Dimethyl Sulfoxide 1 vol%

200 most important genes:

  gene name fitness t score description  
PP_0691 -3.1 -3.0 Glutamate 5-kinase compare
PP_0833 -2.2 -2.1 queuine tRNA-ribosyltransferase compare
PP_4723 -2.0 -2.7 Carbamoyl-phosphate synthase large chain compare
PP_2645 -1.9 -14.0 magnesium transporter, ATP-dependent compare
PP_4700 -1.8 -2.4 pantothenate synthetase compare
PP_4902 -1.8 -1.7 Oligoribonuclease compare
PP_0164 -1.6 -8.2 conserved protein of unknown function compare
PP_0719 -1.5 -2.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0339 -1.5 -4.9 Pyruvate dehydrogenase E1 component compare
PP_4994 -1.5 -1.9 conserved protein of unknown function compare
PP_4008 -1.4 -4.0 ATP-dependent serine protease compare
PP_4724 -1.4 -2.0 Carbamoyl-phosphate synthase small chain compare
PP_4880 -1.3 -8.7 exoribonuclease R compare
PP_0856 -1.3 -0.9 conserved lipoprotein of unknown function compare
PP_4058 -1.2 -8.7 1,4-alpha-glucan branching enzyme compare
PP_3519 -1.2 -2.5 putative Lipoprotein compare
PP_2903 -1.2 -4.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1898 -1.2 -1.3 MotA/TolQ/ExbB proton channel family protein compare
PP_1994 -1.1 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_2356 -1.1 -7.9 putative Phytochrome family protein compare
PP_1763 -1.0 -4.3 putative oxidoreductase compare
PP_5322 -1.0 -6.4 putative metal ion transporter compare
PP_0393 -1.0 -2.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4004 -1.0 -4.0 DNA translocase FtsK compare
PP_1237 -1.0 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4937 -1.0 -7.6 toluene tolerance protein compare
PP_2354 -1.0 -7.2 Sensory box histidine kinase/response regulator compare
PP_4789 -1.0 -5.4 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2322 -1.0 -4.0 Major outer membrane lipoprotein compare
PP_3903 -0.9 -2.4 conserved protein of unknown function compare
PP_0888 -0.9 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_5014 -0.9 -2.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_4999 -0.9 -0.6 dihydroorotase-like protein compare
PP_0218 -0.9 -7.0 Sensory box protein compare
PP_3359 -0.9 -3.5 putative Hydroxycinnamic acid degradation regulator compare
PP_1702 -0.9 -4.2 Recombination-associated protein RdgC compare
PP_1733 -0.9 -2.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_5393 -0.8 -2.1 putative metal-binding chaperone compare
PP_4124 -0.8 -4.1 NADH-quinone oxidoreductase subunit G compare
PP_4126 -0.8 -2.0 NADH-quinone oxidoreductase subunit I compare
PP_4989 -0.8 -3.1 Protein PilJ compare
PP_2646 -0.8 -2.3 conserved protein of unknown function compare
PP_4356 -0.8 -3.6 Flagellar protein FliO compare
PP_1764 -0.7 -2.3 Phosphoglycolate phosphatase 2 compare
PP_1734 -0.7 -2.5 Probable septum site-determining protein MinC compare
PP_2302 -0.7 -4.3 DNA-binding, ATP-dependent protease compare
PP_4993 -0.7 -2.7 Glutathione synthetase compare
PP_5705 -0.7 -1.9 protein of unknown function compare
PP_4696 -0.7 -4.6 Nitrogen regulation protein NR(I) compare
PP_0872 -0.7 -4.6 Peptide chain release factor 3 compare
PP_0593 -0.7 -1.1 putative ribosome-binding factor compare
PP_4482 -0.7 -2.9 Transcriptional regulator, AraC family compare
PP_4895 -0.7 -1.3 tRNA dimethylallyltransferase compare
PP_4265 -0.7 -1.4 DNA-binding transcriptional dual regulator compare
PP_1319 -0.7 -3.7 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4369 -0.7 -4.5 Flagellar M-ring protein compare
PP_1493 -0.7 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5310 -0.7 -3.5 junction-specific ATP-dependent DNA helicase compare
PP_4130 -0.6 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2944 -0.6 -5.1 Sensor histidine kinase compare
PP_0846 -0.6 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_4804 -0.6 -1.1 RlpA-like lipoprotein compare
PP_1912 -0.6 -3.4 Phosphate acyltransferase compare
PP_3916 -0.6 -2.4 conserved protein of unknown function compare
PP_1428 -0.6 -3.9 Sigma factor AlgU negative regulatory protein compare
PP_4379 -0.6 -2.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4358 -0.6 -3.0 flagellar synthesis, switching and energizing component compare
PP_5456 -0.6 -1.0 conserved protein of unknown function compare
PP_5748 -0.6 -1.6 cytochrome c heme lyase subunit compare
PP_4964 -0.6 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_4824 -0.6 -3.5 Sensor histidine kinase/response regulator compare
PP_0080 -0.6 -3.1 conserved protein of unknown function compare
PP_1317 -0.6 -2.3 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5162 -0.6 -3.1 conserved exported protein of unknown function compare
PP_5350 -0.6 -2.1 Transcriptional regulator, RpiR family compare
PP_2029 -0.6 -2.8 von Willebrand factor type A domain protein compare
PP_4642 -0.6 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_4368 -0.6 -4.3 flagellar motor switch protein compare
PP_0760 -0.6 -3.1 conserved membrane protein of unknown function compare
PP_4121 -0.5 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_4375 -0.5 -3.8 flagellar chaperone, inhibits premature FliC assembly compare
PP_3320 -0.5 -2.3 conserved protein of unknown function compare
PP_0435 -0.5 -2.8 Peptidase, M23/M37 family compare
PP_4366 -0.5 -4.6 flagellum-specific ATP synthase compare
PP_1318 -0.5 -3.1 Cytochrome b compare
PP_4370 -0.5 -2.9 Flagellar hook-basal body complex protein FliE compare
PP_1054 -0.5 -1.9 Type II secretion pathway protein XcpZ compare
PP_5486 -0.5 -0.8 conserved protein of unknown function compare
PP_1041 -0.5 -1.4 twin arginine protein export complex subunit compare
PP_1168 -0.5 -3.5 D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data) compare
PP_1128 -0.5 -1.3 OmpA family protein compare
PP_2087 -0.5 -1.7 CmpX protein compare
PP_1268 -0.5 -1.6 putative HtrA suppressor protein sohA compare
PP_2378 -0.5 -1.7 Fe/S biogenesis protein NfuA compare
PP_2945 -0.5 -3.3 putative sensor histidine kinase/response regulator compare
PP_3819 -0.5 -3.3 glutathione reductase (NADPH) compare
PP_2414 -0.5 -1.2 conserved exported protein of unknown function compare
PP_4720 -0.5 -2.0 putative RNA binding protein compare
PP_4250 -0.5 -4.1 cytochrome c oxidase subunit I, cbb3-type compare
PP_0566 -0.5 -1.0 translation-related factor compare
PP_4381 -0.5 -4.4 Flagellar hook-associated protein FlgK compare
PP_1362 -0.5 -2.6 pyruvate kinase II compare
PP_4129 -0.5 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2214 -0.5 -2.4 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1575 -0.5 -1.8 conserved protein of unknown function compare
PP_4341 -0.5 -4.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_2144 -0.5 -2.2 Transcriptional regulator, TetR family compare
PP_1390 -0.5 -1.6 conserved exported protein of unknown function compare
PP_4260 -0.5 -2.7 conserved protein of unknown function compare
PP_4376 -0.5 -4.3 flagellar filament capping protein compare
PP_3899 -0.5 -2.1 conserved protein of unknown function, hicB family compare
PP_5294 -0.5 -2.9 Ribonuclease PH compare
PP_1214 -0.5 -1.4 putative transcriptional regulatory protein compare
PP_4359 -0.5 -3.8 Flagellar protein FliL compare
PP_4418 -0.5 -2.4 conserved protein of unknown function compare
PP_4390 -0.5 -3.8 flagellar basal-body rod protein FlgC compare
PP_5295 -0.5 -1.1 conserved protein of unknown function compare
PP_0111 -0.5 -3.5 Electron transport protein SCO1/SenC compare
PP_1232 -0.5 -1.9 conserved exported protein of unknown function compare
PP_4361 -0.5 -2.9 Flagellar hook-length control protein FliK compare
PP_0003 -0.5 -2.1 16S RNA methyltransferase compare
PP_5324 -0.5 -1.1 Response regulator compare
PP_4131 -0.5 -2.8 NADH-quinone oxidoreductase subunit N compare
PP_2088 -0.5 -2.3 RNA polymerase sigma factor SigX compare
PP_5546 -0.5 -1.8 conserved protein of unknown function compare
PP_2402 -0.5 -1.4 putative Sensor histidine kinase compare
PP_4988 -0.5 -3.0 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5475 -0.4 -1.0 conserved protein of unknown function compare
PP_5580 -0.4 -1.6 protein of unknown function compare
PP_5338 -0.4 -1.6 aspartate ammonia-lyase compare
PP_4389 -0.4 -3.2 Flagellar basal-body rod modification protein FlgD compare
PP_2210 -0.4 -2.0 LysR family transcriptional regulator compare
PP_0125 -0.4 -1.6 putative cytochrome c-type protein compare
PP_4380 -0.4 -4.0 Flagellar hook-associated protein FlgL compare
PP_1589 -0.4 -3.3 uridylyltransferase compare
PP_4471 -0.4 -1.5 Magnesium transporter compare
PP_0683 -0.4 -1.7 conserved protein of unknown function compare
PP_4396 -0.4 -2.0 conserved protein of unknown function compare
PP_3333 -0.4 -1.5 conserved protein of unknown function compare
PP_2942 -0.4 -3.6 Response regulator compare
PP_0984 -0.4 -2.5 conserved membrane protein of unknown function compare
PP_4320 -0.4 -2.7 cytochrome c-type biogenesis protein compare
PP_2169 -0.4 -2.7 tRNA-dihydrouridine synthase A compare
PP_1664 -0.4 -2.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_4215 -0.4 -2.3 pyoverdine biosynthesis related protein compare
PP_2581 -0.4 -0.8 conserved protein of unknown function compare
PP_0346 -0.4 -2.8 putative Heptose kinase WapQ compare
PP_1719 -0.4 -3.5 Tail-specific protease prc compare
PP_4352 -0.4 -3.7 flagellin export apparatus, substrate specificity protein compare
PP_4247 -0.4 -1.1 Exonuclease compare
PP_0758 -0.4 -2.2 conserved protein of unknown function compare
PP_1439 -0.4 -1.3 conserved exported protein of unknown function compare
PP_5331 -0.4 -1.6 Long-chain acyl-CoA thioester hydrolase compare
PP_4362 -0.4 -2.0 conserved protein of unknown function compare
PP_1055 -0.4 -1.2 Type II secretion pathway protein GspN compare
PP_4344 -0.4 -3.7 flagellar export pore protein compare
PP_0345 -0.4 -2.7 putative Heptose kinase WapP compare
PP_4378 -0.4 -3.7 flagellin, filament structural protein compare
PP_1176 -0.4 -1.1 conserved protein of unknown function compare
PP_3341 -0.4 -2.1 nickel-responsive regulator compare
PP_2147 -0.4 -1.7 conserved exported protein of unknown function compare
PP_0775 -0.4 -1.1 conserved protein of unknown function compare
PP_0401 -0.4 -1.3 Ribosomal RNA small subunit methyltransferase A compare
PP_5140 -0.4 -1.6 Transcriptional regulator, MerR family compare
PP_0406 -0.4 -1.2 Nucleotidyltransferase family protein compare
PP_1774 -0.4 -0.7 conserved exported protein of unknown function compare
PP_4065 -0.4 -3.0 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_4162 -0.4 -1.5 conserved membrane protein of unknown function compare
PP_0959 -0.4 -1.1 phospholipid ABC transporter compare
PP_4707 -0.4 -1.3 OsmY-related protein compare
PP_0195 -0.4 -1.0 conserved protein of unknown function compare
PP_2847 -0.4 -1.4 Urease accessory protein UreJ compare
PP_2387 -0.4 -0.9 conserved protein of unknown function compare
PP_2379 -0.4 -1.8 putative cytochrome oxidase biogenesis protein compare
PP_4997 -0.4 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4261 -0.4 -1.8 cation-transporting P-type ATPase compare
PP_5489 -0.4 -1.7 conserved protein of unknown function compare
PP_4204 -0.4 -1.7 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2773 -0.4 -1.2 conserved protein of unknown function compare
PP_3052 -0.4 -1.0 conserved protein of unknown function compare
PP_0607 -0.4 -1.5 putative Type IV pili biogenesis protein FimT compare
PP_4941 -0.4 -1.8 conserved exported protein of unknown function compare
PP_4917 -0.4 -1.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4365 -0.4 -2.7 Flagellar protein FliJ compare
PP_0258 -0.4 -1.2 regulator of murein cross-linking compare
PP_4556 -0.4 -2.0 conserved protein of unknown function compare
PP_2160 -0.4 -2.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_1766 -0.4 -2.2 methylthioribose-1-phosphate isomerase compare
PP_4343 -0.4 -2.0 Flagellar biosynthesis protein FlhF compare
PP_1044 -0.4 -2.4 Lipoprotein UxpA compare
PP_1598 -0.4 -2.3 regulatory intramembrane protein RIP zinc protease compare
PP_0832 -0.4 -1.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_3555 -0.4 -2.7 putative Transmembrane sensor compare
PP_3427 -0.4 -1.8 Multidrug efflux RND outer membrane protein OprN compare
PP_0504 -0.4 -2.0 Outer membrane protein OprG compare
PP_1218 -0.4 -1.6 putative acyl-CoA thioesterase compare
PP_3643 -0.4 -1.7 putative Oxidoreductase compare
PP_1187 -0.4 -2.8 sensor protein compare
PP_0949 -0.4 -2.1 putative ATP-binding protein UPF0042 compare
PP_1673 -0.4 -2.4 cobyrinate a,c-diamide synthase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Dimethyl Sulfoxide across organisms