Experiment set49S107 for Pseudomonas putida KT2440

Compare to:

LB_noSalt with Sodium Chloride 1100 mM

200 most important genes:

  gene name fitness t score description  
PP_3821 -4.2 -16.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4099 -4.1 -25.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 -3.8 -25.7 Sensor protein GacS compare
PP_4943 -2.9 -4.7 putative Glycosyl transferase compare
PP_1036 -2.8 -15.7 membrane-bound lytic murein transglycosylase F compare
PP_2645 -2.6 -15.0 magnesium transporter, ATP-dependent compare
PP_4895 -2.6 -1.8 tRNA dimethylallyltransferase compare
PP_1898 -2.4 -1.6 MotA/TolQ/ExbB proton channel family protein compare
PP_4902 -2.4 -1.6 Oligoribonuclease compare
PP_0123 -2.4 -12.2 DNA polymerase I, 5 compare
PP_4789 -2.1 -8.7 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1198 -2.0 -3.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4803 -1.9 -8.3 D-alanyl-D-alanine carboxypeptidase compare
PP_0719 -1.9 -2.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4994 -1.9 -2.2 conserved protein of unknown function compare
PP_0872 -1.9 -7.6 Peptide chain release factor 3 compare
PP_0833 -1.8 -2.4 queuine tRNA-ribosyltransferase compare
PP_0435 -1.8 -7.4 Peptidase, M23/M37 family compare
PP_5322 -1.8 -9.5 putative metal ion transporter compare
PP_2646 -1.7 -3.6 conserved protein of unknown function compare
PP_4880 -1.7 -9.9 exoribonuclease R compare
PP_3519 -1.7 -2.3 putative Lipoprotein compare
PP_0691 -1.7 -2.8 Glutamate 5-kinase compare
PP_4265 -1.6 -3.4 DNA-binding transcriptional dual regulator compare
PP_4836 -1.6 -2.7 conserved exported protein of unknown function compare
PP_2322 -1.6 -3.1 Major outer membrane lipoprotein compare
PP_0339 -1.6 -5.3 Pyruvate dehydrogenase E1 component compare
PP_4824 -1.6 -7.8 Sensor histidine kinase/response regulator compare
PP_1733 -1.6 -3.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_0566 -1.5 -1.9 translation-related factor compare
PP_2348 -1.5 -4.8 Sensor histidine kinase compare
PP_5706 -1.5 -1.8 Sec translocation complex - SecG subunit compare
PP_4723 -1.4 -3.8 Carbamoyl-phosphate synthase large chain compare
PP_1224 -1.4 -6.4 periplasmic subunit of the TolQRA transport system compare
PP_4785 -1.3 -3.7 conserved exported protein of unknown function compare
PP_4940 -1.3 -8.4 Putative glycosyltransferase compare
PP_0856 -1.3 -1.3 conserved lipoprotein of unknown function compare
PP_0393 -1.3 -3.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2928 -1.3 -9.0 Saccharopine dehydrogenase compare
PP_1623 -1.3 -6.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_4058 -1.3 -9.4 1,4-alpha-glucan branching enzyme compare
PP_1598 -1.3 -4.9 regulatory intramembrane protein RIP zinc protease compare
PP_5053 -1.3 -7.0 Protein-export protein SecB compare
PP_0938 -1.3 -8.8 conserved protein of unknown function compare
PP_1055 -1.2 -2.3 Type II secretion pathway protein GspN compare
PP_3649 -1.2 -3.2 Transcriptional regulator, GntR family compare
PP_4804 -1.2 -1.9 RlpA-like lipoprotein compare
PP_4696 -1.2 -6.5 Nitrogen regulation protein NR(I) compare
PP_1428 -1.2 -6.0 Sigma factor AlgU negative regulatory protein compare
PP_4700 -1.2 -2.3 pantothenate synthetase compare
PP_2030 -1.2 -4.2 conserved protein of unknown function compare
PP_5310 -1.2 -6.7 junction-specific ATP-dependent DNA helicase compare
PP_1783 -1.2 -2.7 dTDP-glucose pyrophosphorylase compare
PP_4999 -1.1 -0.7 dihydroorotase-like protein compare
PP_0852 -1.1 -5.1 Transcriptional regulator, Cro/CI family compare
PP_4724 -1.1 -1.9 Carbamoyl-phosphate synthase small chain compare
PP_1186 -1.1 -2.8 two component system DNA-binding transcriptional dual regulator compare
PP_4892 -1.1 -6.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0888 -1.1 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_2929 -1.1 -7.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1185 -1.1 -5.3 Outer membrane protein H1 compare
PP_2402 -1.1 -3.0 putative Sensor histidine kinase compare
PP_5045 -1.1 -5.7 tRNA sulfurtransferase compare
PP_4828 -1.1 -1.1 Precorrin-8X methylmutase compare
PP_4008 -1.0 -3.5 ATP-dependent serine protease compare
PP_1776 -1.0 -8.2 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0951 -1.0 -6.3 Ribosome hibernation promoting factor compare
PP_4917 -1.0 -4.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0246 -1.0 -3.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_4695 -1.0 -8.2 Sensory box histidine kinase compare
PP_1800 -1.0 -7.4 Oxidoreductase Rmd compare
PP_0111 -1.0 -6.6 Electron transport protein SCO1/SenC compare
PP_3957 -1.0 -8.3 choline/carnitine/betaine transporter BetTC conserved
PP_1802 -1.0 -8.2 glycosyl transferase compare
PP_2000 -1.0 -1.6 amidophosphoribosyl transferase compare
PP_1208 -1.0 -2.2 conserved protein of unknown function, SlyX family compare
PP_1805 -1.0 -8.3 Polysaccharide biosynthesis protein compare
PP_3329 -1.0 -7.8 conserved membrane protein of unknown function compare
PP_4938 -0.9 -7.2 putative Glycosyl transferase compare
PP_1801 -0.9 -7.3 Glycosyl transferase WbpY compare
PP_4937 -0.9 -6.1 toluene tolerance protein compare
PP_1734 -0.9 -3.1 Probable septum site-determining protein MinC compare
PP_2280 -0.9 -2.0 conserved protein of unknown function compare
PP_0735 -0.9 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_0063 -0.9 -3.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5146 -0.9 -5.8 RNA pyrophosphohydrolase compare
PP_1663 -0.9 -4.6 conserved exported protein of unknown function compare
PP_4897 -0.9 -2.4 N-acetylmuramoyl-L-alanine amidase compare
PP_2029 -0.9 -3.4 von Willebrand factor type A domain protein compare
PP_5583 -0.9 -2.1 conserved protein of unknown function compare
PP_2027 -0.9 -5.6 conserved exported protein of unknown function compare
PP_1918 -0.9 -7.0 septation protein compare
PP_2336 -0.9 -3.2 aconitate hydratase 1 compare
PP_4891 -0.8 -4.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1427 -0.8 -4.3 RNA polymerase sigma E factor compare
PP_1804 -0.8 -5.6 Glycosyl transferase WbpL compare
PP_2031 -0.8 -2.6 conserved protein of unknown function compare
PP_5161 -0.8 -3.4 putative lysophospholipase compare
PP_1646 -0.8 -3.4 putative Thioredoxin compare
PP_4268 -0.8 -1.4 nucleoid-associated broad specificity regulator compare
PP_2145 -0.8 -2.5 beta-N-acetylglucosaminidase compare
PP_1763 -0.8 -2.7 putative oxidoreductase compare
PP_3899 -0.8 -1.9 conserved protein of unknown function, hicB family compare
PP_2299 -0.8 -2.7 Trigger factor compare
PP_1268 -0.8 -2.5 putative HtrA suppressor protein sohA compare
PP_1216 -0.8 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4942 -0.8 -2.0 conserved protein of unknown function compare
PP_3924 -0.8 -2.4 conserved protein of unknown function compare
PP_2144 -0.8 -2.7 Transcriptional regulator, TetR family compare
PP_0022 -0.8 -1.1 hypothetical protein compare
PP_2718 -0.8 -1.7 arsenic resistance transcriptional regulator compare
PP_4726 -0.8 -1.8 Chaperone protein DnaJ compare
PP_2217 -0.8 -2.7 enoyl-CoA hydratase compare
PP_2032 -0.8 -4.0 putative ATPase compare
PP_5145 -0.8 -5.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2147 -0.7 -2.6 conserved exported protein of unknown function compare
PP_5486 -0.7 -0.8 conserved protein of unknown function compare
PP_5109 -0.7 -4.8 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_2337 -0.7 -1.9 aconitate isomerase compare
PP_2028 -0.7 -4.1 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_0846 -0.7 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_1799 -0.7 -5.5 GDP-mannose 4,6-dehydratase compare
PP_4936 -0.7 -4.0 O-antigen polymerase compare
PP_4766 -0.7 -4.3 ATP-dependent RNA helicase compare
PP_1912 -0.7 -3.2 Phosphate acyltransferase compare
PP_0711 -0.7 -3.0 putative hydrolase compare
PP_3359 -0.7 -3.0 putative Hydroxycinnamic acid degradation regulator compare
PP_1702 -0.7 -3.5 Recombination-associated protein RdgC compare
PP_2403 -0.7 -1.4 Chemotaxis protein CheY compare
PP_1128 -0.7 -1.6 OmpA family protein compare
PP_0855 -0.7 -1.7 conserved protein of unknown function compare
PP_1906 -0.7 -2.9 ribosomal large subunit pseudouridine synthase C compare
PP_1780 -0.7 -5.9 putative mannosyltransferase compare
PP_4642 -0.7 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_2945 -0.7 -3.0 putative sensor histidine kinase/response regulator compare
PP_0949 -0.7 -3.6 putative ATP-binding protein UPF0042 compare
PP_3052 -0.7 -1.2 conserved protein of unknown function compare
PP_3946 -0.7 -1.0 HTH-type transcriptional repressor NicR compare
PP_0941 -0.7 -3.4 putative ribosome associated protein compare
PP_5179 -0.6 -4.2 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_4517 -0.6 -2.1 conserved protein of unknown function compare
PP_0910 -0.6 -4.4 conserved exported protein of unknown function compare
PP_3333 -0.6 -2.1 conserved protein of unknown function compare
PP_1386 -0.6 -4.1 Probable efflux pump periplasmic linker TtgA compare
PP_1439 -0.6 -1.5 conserved exported protein of unknown function compare
PP_4004 -0.6 -2.3 DNA translocase FtsK compare
PP_0276 -0.6 -1.0 Transcriptional regulator, Cro/CI family compare
PP_4150 -0.6 -2.3 microcin C transporter - ATP binding subunit compare
PP_3960 -0.6 -3.5 Transcriptional regulator, TetR family compare
PP_5139 -0.6 -3.3 cadmium translocating P-type ATPase compare
PP_5475 -0.6 -1.2 conserved protein of unknown function compare
PP_3034 -0.6 -2.3 putative Regulator protein compare
PP_4707 -0.6 -2.0 OsmY-related protein compare
PP_1187 -0.6 -4.4 sensor protein compare
PP_5456 -0.6 -0.9 conserved protein of unknown function compare
PP_3064 -0.6 -1.0 Phage tail protein compare
PP_5352 -0.6 -5.2 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_2230 -0.6 -4.9 putative K(+)/H(+) antiporter subunit A/B compare
PP_5502 -0.6 -2.3 ribosome modulation factor compare
PP_1232 -0.6 -2.2 conserved exported protein of unknown function compare
PP_2944 -0.6 -4.4 Sensor histidine kinase compare
PP_0627 -0.6 -1.6 conserved protein of unknown function compare
PP_4009 -0.6 -2.5 ATP-dependent Clp protease adapter protein ClpS compare
PP_0738 -0.6 -1.9 conserved protein of unknown function compare
PP_1142 -0.6 -1.0 conserved protein of unknown function compare
PP_4941 -0.6 -2.8 conserved exported protein of unknown function compare
PP_t13 -0.6 -1.2 tRNA-Lys compare
PP_5621 -0.6 -1.7 protein of unknown function compare
PP_4129 -0.6 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5546 -0.6 -1.4 conserved protein of unknown function compare
PP_5393 -0.6 -1.2 putative metal-binding chaperone compare
PP_1214 -0.6 -1.6 putative transcriptional regulatory protein compare
PP_4684 -0.6 -3.2 conserved protein of unknown function with kinase-like domain compare
PP_2098 -0.6 -3.4 D-alanyl-D-alanine carboxypeptidase compare
PP_1131 -0.6 -1.9 outer membrane lipoprotein compare
PP_5309 -0.5 -3.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_5489 -0.5 -1.5 conserved protein of unknown function compare
PP_0775 -0.5 -1.1 conserved protein of unknown function compare
PP_0919 -0.5 -1.6 conserved protein of unknown function compare
PP_2429 -0.5 -0.9 putative Membrane protein compare
PP_0758 -0.5 -2.7 conserved protein of unknown function compare
PP_1779 -0.5 -2.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2226 -0.5 -2.8 putative K(+)/H(+) antiporter subunit F compare
PP_2378 -0.5 -1.4 Fe/S biogenesis protein NfuA compare
PP_1822 -0.5 -2.1 conserved protein of unknown function compare
PP_3284 -0.5 -1.9 enoyl-CoA hydratase-isomerase compare
PP_1034 -0.5 -3.8 multicopper oxidase compare
PP_2181 -0.5 -2.6 Transcriptional regulator, Cro/CI family compare
PP_1629 -0.5 -3.4 Protein RecA compare
PP_2340 -0.5 -1.8 conserved protein of unknown function compare
PP_2942 -0.5 -4.2 Response regulator compare
PP_5052 -0.5 -1.8 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_4693 -0.5 -1.8 RNA polymerase-binding transcription factor DksA compare
PP_2459 -0.5 -0.7 ribose pyranase compare
PP_0567 -0.5 -4.0 Biosynthetic arginine decarboxylase compare
PP_2227 -0.5 -2.9 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_0683 -0.5 -1.5 conserved protein of unknown function compare
PP_3541 -0.5 -1.5 Transporter, MgtC family compare
PP_2714 -0.5 -2.8 Sensor histidine kinase compare
PP_0266 -0.5 -3.4 Agmatine deiminase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Sodium Chloride across organisms