Experiment set49S106 for Pseudomonas putida KT2440

Compare to:

LB_noSalt with Sodium Chloride 500 mM

200 most important genes:

  gene name fitness t score description  
PP_4994 -2.2 -2.1 conserved protein of unknown function compare
PP_2645 -2.0 -15.0 magnesium transporter, ATP-dependent compare
PP_4902 -1.7 -1.9 Oligoribonuclease compare
PP_1734 -1.6 -5.0 Probable septum site-determining protein MinC compare
PP_0435 -1.6 -7.1 Peptidase, M23/M37 family compare
PP_0872 -1.6 -8.4 Peptide chain release factor 3 compare
PP_0691 -1.6 -2.8 Glutamate 5-kinase compare
PP_1215 -1.4 -3.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_0339 -1.4 -5.1 Pyruvate dehydrogenase E1 component compare
PP_4880 -1.3 -8.6 exoribonuclease R compare
PP_0833 -1.2 -2.1 queuine tRNA-ribosyltransferase compare
PP_0123 -1.2 -8.4 DNA polymerase I, 5 compare
PP_1898 -1.1 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4723 -1.1 -3.0 Carbamoyl-phosphate synthase large chain compare
PP_4696 -1.1 -6.5 Nitrogen regulation protein NR(I) compare
PP_4265 -1.1 -2.8 DNA-binding transcriptional dual regulator compare
PP_4895 -1.0 -1.7 tRNA dimethylallyltransferase compare
PP_0856 -1.0 -1.3 conserved lipoprotein of unknown function compare
PP_4999 -1.0 -0.6 dihydroorotase-like protein compare
PP_1428 -1.0 -4.7 Sigma factor AlgU negative regulatory protein compare
PP_4008 -1.0 -3.4 ATP-dependent serine protease compare
PP_4642 -1.0 -2.0 Cyclic diguanosine monophosphate-binding protein compare
PP_2646 -1.0 -3.7 conserved protein of unknown function compare
PP_4262 -0.9 -2.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5393 -0.9 -1.7 putative metal-binding chaperone compare
PP_4122 -0.9 -2.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2378 -0.9 -2.9 Fe/S biogenesis protein NfuA compare
PP_2322 -0.9 -2.8 Major outer membrane lipoprotein compare
PP_5310 -0.9 -5.4 junction-specific ATP-dependent DNA helicase compare
PP_2302 -0.9 -4.7 DNA-binding, ATP-dependent protease compare
PP_4058 -0.9 -6.9 1,4-alpha-glucan branching enzyme compare
PP_4253 -0.9 -3.3 cytochrome c oxidase subunit, cbb3-type compare
PP_3519 -0.9 -2.3 putative Lipoprotein compare
PP_4121 -0.9 -5.1 NADH-quinone oxidoreductase subunit C/D compare
PP_4261 -0.8 -4.8 cation-transporting P-type ATPase compare
PP_4124 -0.8 -4.6 NADH-quinone oxidoreductase subunit G compare
PP_1319 -0.8 -4.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4129 -0.8 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4937 -0.8 -6.1 toluene tolerance protein compare
PP_1216 -0.8 -2.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4874 -0.8 -1.2 50S ribosomal protein L9 compare
PP_1702 -0.8 -4.1 Recombination-associated protein RdgC compare
PP_4251 -0.8 -3.9 cytochrome c oxidase subunit, cbb3-type compare
PP_2217 -0.8 -4.0 enoyl-CoA hydratase compare
PP_5546 -0.7 -2.8 conserved protein of unknown function compare
PP_5014 -0.7 -2.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4120 -0.7 -3.5 NADH-quinone oxidoreductase subunit B compare
PP_1317 -0.7 -4.0 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0513 -0.7 -3.2 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1318 -0.7 -4.9 Cytochrome b compare
PP_5352 -0.7 -6.2 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4804 -0.7 -1.3 RlpA-like lipoprotein compare
PP_0832 -0.7 -2.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1224 -0.7 -4.2 periplasmic subunit of the TolQRA transport system compare
PP_4824 -0.7 -4.3 Sensor histidine kinase/response regulator compare
PP_0846 -0.7 -1.6 DnaK-like molecular chaperone specific for IscU compare
PP_0888 -0.7 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_2371 -0.7 -4.2 Sulphite reductase hemoprotein, beta subunit compare
PP_0127 -0.7 -2.6 Thiol:disulfide interchange protein compare
PP_4130 -0.7 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4131 -0.7 -4.3 NADH-quinone oxidoreductase subunit N compare
PP_1912 -0.7 -3.9 Phosphate acyltransferase compare
PP_4004 -0.7 -2.8 DNA translocase FtsK compare
PP_1232 -0.6 -2.5 conserved exported protein of unknown function compare
PP_3821 -0.6 -5.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4342 -0.6 -2.3 flagellar synthesis regulator, putative ATPase compare
PP_2031 -0.6 -2.5 conserved protein of unknown function compare
PP_1906 -0.6 -3.4 ribosomal large subunit pseudouridine synthase C compare
PP_4482 -0.6 -2.6 Transcriptional regulator, AraC family compare
PP_2144 -0.6 -2.7 Transcriptional regulator, TetR family compare
PP_5327 -0.6 -2.4 putative phosphate ABC transporter, permease subunit compare
PP_0377 -0.6 -2.3 coenzyme PQQ synthesis protein D compare
PP_1629 -0.6 -4.2 Protein RecA compare
PP_1366 -0.6 -1.7 Transcriptional regulator MvaT, P16 subunit compare
PP_4693 -0.6 -2.0 RNA polymerase-binding transcription factor DksA compare
PP_1186 -0.6 -1.8 two component system DNA-binding transcriptional dual regulator compare
PP_3902 -0.6 -2.4 conserved protein of unknown function compare
PP_4695 -0.6 -5.0 Sensory box histidine kinase compare
PP_4988 -0.6 -3.1 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1468 -0.6 -1.5 Tyrosine recombinase XerD compare
PP_t10 -0.6 -2.0 tRNA-Pro compare
PP_3957 -0.6 -5.0 choline/carnitine/betaine transporter BetTC conserved
PP_4909 -0.6 -4.0 phosphoserine phosphatase compare
PP_0195 -0.6 -1.2 conserved protein of unknown function compare
PP_0949 -0.6 -3.7 putative ATP-binding protein UPF0042 compare
PP_5027 -0.6 -2.3 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2145 -0.6 -2.4 beta-N-acetylglucosaminidase compare
PP_4268 -0.6 -1.2 nucleoid-associated broad specificity regulator compare
PP_5748 -0.5 -1.4 cytochrome c heme lyase subunit compare
PP_4793 -0.5 -2.5 conserved protein of unknown function compare
PP_2030 -0.5 -3.7 conserved protein of unknown function compare
PP_2000 -0.5 -1.1 amidophosphoribosyl transferase compare
PP_3999 -0.5 -3.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0962 -0.5 -2.5 toluene-tolerance protein compare
PP_2214 -0.5 -3.0 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2433 -0.5 -2.2 conserved protein of unknown function compare
PP_5162 -0.5 -3.0 conserved exported protein of unknown function compare
PP_4260 -0.5 -2.4 conserved protein of unknown function compare
PP_0908 -0.5 -3.5 conserved exported protein of unknown function compare
PP_1208 -0.5 -1.9 conserved protein of unknown function, SlyX family compare
PP_0065 -0.5 -2.1 NAD-binding component of TrK potassium transporter compare
PP_4789 -0.5 -2.8 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2379 -0.5 -2.5 putative cytochrome oxidase biogenesis protein compare
PP_5717 -0.5 -1.7 conserved protein of unknown function compare
PP_2328 -0.5 -3.3 Phosphoadenosine phosphosulfate reductase compare
PP_3649 -0.5 -1.8 Transcriptional regulator, GntR family compare
PP_t12 -0.5 -1.1 tRNA-Thr compare
PP_4343 -0.5 -3.0 Flagellar biosynthesis protein FlhF compare
PP_0111 -0.5 -3.3 Electron transport protein SCO1/SenC compare
PP_2215 -0.5 -3.1 acetyl-CoA acetyltransferase compare
PP_5279 -0.5 -2.1 conserved protein of unknown function compare
PP_4263 -0.5 -1.7 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4475 -0.5 -3.2 succinylglutamate desuccinylase compare
PP_4700 -0.5 -1.1 pantothenate synthetase compare
PP_1142 -0.5 -1.2 conserved protein of unknown function compare
PP_3505 -0.5 -1.8 conserved protein of unknown function compare
PP_2900 -0.5 -1.4 conserved protein of unknown function compare
PP_3903 -0.5 -1.4 conserved protein of unknown function compare
PP_2944 -0.5 -4.1 Sensor histidine kinase compare
PP_1673 -0.5 -3.2 cobyrinate a,c-diamide synthase compare
PP_0909 -0.5 -3.6 conserved exported protein of unknown function compare
PP_5216 -0.5 -0.9 exopolyphosphatase compare
PP_2032 -0.5 -3.2 putative ATPase compare
PP_5063 -0.5 -2.7 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_0984 -0.4 -2.3 conserved membrane protein of unknown function compare
PP_5278 -0.4 -3.1 4-guanidinobutyraldehyde dehydrogenase compare
PP_5100 -0.4 -2.0 dITP/XTP pyrophosphatase compare
PP_0758 -0.4 -2.7 conserved protein of unknown function compare
PP_2370 -0.4 -1.6 conserved protein of unknown function compare
PP_5121 -0.4 -2.3 conserved exported protein of unknown function compare
PP_4699 -0.4 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0951 -0.4 -3.7 Ribosome hibernation promoting factor compare
PP_2526 -0.4 -1.8 conserved membrane protein of unknown function compare
PP_0504 -0.4 -2.7 Outer membrane protein OprG compare
PP_4803 -0.4 -2.8 D-alanyl-D-alanine carboxypeptidase compare
PP_4126 -0.4 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_1493 -0.4 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0406 -0.4 -1.5 Nucleotidyltransferase family protein compare
PP_2820 -0.4 -1.3 HTH-type transcriptional regulator nfxB compare
PP_5619 -0.4 -2.4 protein of unknown function compare
PP_1187 -0.4 -3.1 sensor protein compare
PP_3359 -0.4 -1.8 putative Hydroxycinnamic acid degradation regulator compare
PP_2348 -0.4 -2.9 Sensor histidine kinase compare
PP_0910 -0.4 -3.0 conserved exported protein of unknown function compare
PP_4204 -0.4 -2.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5198 -0.4 -2.0 conserved protein of unknown function compare
PP_0760 -0.4 -2.0 conserved membrane protein of unknown function compare
PP_1860 -0.4 -2.0 Organic hydroperoxide resistance transcriptional regulator compare
PP_1822 -0.4 -2.3 conserved protein of unknown function compare
PP_5000 -0.4 -1.0 peptidase component of the ATP-dependent HslVU protease compare
PP_4320 -0.4 -2.2 cytochrome c-type biogenesis protein compare
PP_0960 -0.4 -2.6 phospholipid ABC transporter binding protein compare
PP_4356 -0.4 -1.6 Flagellar protein FliO compare
PP_3204 -0.4 -1.6 conserved protein of unknown function compare
PP_4720 -0.4 -1.6 putative RNA binding protein compare
PP_5486 -0.4 -1.3 conserved protein of unknown function compare
PP_5114 -0.4 -1.2 putative adenine methyltransferase compare
PP_2804 -0.4 -1.9 Hydrolase, alpha/beta fold family compare
PP_2028 -0.4 -2.6 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2718 -0.4 -1.8 arsenic resistance transcriptional regulator compare
PP_0881 -0.4 -2.8 dipeptide ABC transporter - putative membrane subunit compare
PP_1217 -0.4 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0082 -0.4 -2.2 tryptophan synthase alpha chain compare
PP_5617 -0.4 -2.4 conserved protein of unknown function compare
PP_1763 -0.4 -2.0 putative oxidoreductase compare
PP_0959 -0.4 -1.1 phospholipid ABC transporter compare
PP_4009 -0.4 -1.8 ATP-dependent Clp protease adapter protein ClpS compare
PP_0022 -0.4 -0.9 hypothetical protein compare
PP_0346 -0.4 -3.1 putative Heptose kinase WapQ compare
PP_1994 -0.4 -1.1 tRNA pseudouridine (38-40)synthase compare
PP_4136 -0.4 -0.6 Transcriptional regulator, LuxR family compare
PP_4952 -0.4 -1.0 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3409 -0.4 -1.5 putative Cobalamin biosynthesis protein cobE compare
PP_1055 -0.4 -0.9 Type II secretion pathway protein GspN compare
PP_1218 -0.4 -2.1 putative acyl-CoA thioesterase compare
PP_5331 -0.4 -1.4 Long-chain acyl-CoA thioester hydrolase compare
PP_4362 -0.4 -2.0 conserved protein of unknown function compare
PP_0957 -0.4 -1.6 D-arabinose 5-phosphate isomerase compare
PP_1589 -0.4 -3.0 uridylyltransferase compare
PP_2903 -0.4 -1.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0250 -0.4 -1.3 heat shock protein Hsp15 involved in ribosome recycling compare
PP_1935 -0.4 -1.5 Transcriptional regulator, Cro/CI family compare
PP_4250 -0.4 -2.9 cytochrome c oxidase subunit I, cbb3-type compare
PP_5324 -0.4 -1.5 Response regulator compare
PP_0887 -0.4 -2.5 Sensor histidine kinase compare
PP_4707 -0.4 -1.5 OsmY-related protein compare
PP_4207 -0.4 -1.8 conserved protein of unknown function compare
PP_1036 -0.4 -3.0 membrane-bound lytic murein transglycosylase F compare
PP_0484 -0.4 -2.3 transporter of an unknown substrate compare
PP_5283 -0.4 -2.6 periplasmic dipeptide transport protein compare
PP_3284 -0.4 -1.7 enoyl-CoA hydratase-isomerase compare
PP_4964 -0.3 -0.9 D-erythrose 4-phosphate dehydrogenase compare
PP_5313 -0.3 -1.5 DNA-binding protein HU-alpha compare
PP_1214 -0.3 -1.0 putative transcriptional regulatory protein compare
PP_4830 -0.3 -2.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_3946 -0.3 -1.0 HTH-type transcriptional repressor NicR compare
PP_2668 -0.3 -0.9 ABC efflux transporter, ATP-binding protein compare
PP_1918 -0.3 -3.1 septation protein compare
PP_1034 -0.3 -2.8 multicopper oxidase compare
PP_4259 -0.3 -2.7 Iron-sulfur cluster-binding protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Sodium Chloride across organisms