Experiment set49S103 for Pseudomonas putida KT2440

Compare to:

LB 37C

200 most important genes:

  gene name fitness t score description  
PP_0833 -2.0 -2.6 queuine tRNA-ribosyltransferase compare
PP_0846 -1.8 -3.4 DnaK-like molecular chaperone specific for IscU compare
PP_0164 -1.7 -10.5 conserved protein of unknown function compare
PP_2645 -1.7 -13.9 magnesium transporter, ATP-dependent compare
PP_1898 -1.7 -1.9 MotA/TolQ/ExbB proton channel family protein compare
PP_4700 -1.7 -3.1 pantothenate synthetase compare
PP_4008 -1.7 -5.4 ATP-dependent serine protease compare
PP_0691 -1.4 -2.7 Glutamate 5-kinase compare
PP_4895 -1.4 -2.2 tRNA dimethylallyltransferase compare
PP_4880 -1.3 -9.5 exoribonuclease R compare
PP_4902 -1.3 -1.7 Oligoribonuclease compare
PP_1430 -1.3 -8.5 putative periplasmic serine endoprotease DegP-like compare
PP_4126 -1.3 -3.8 NADH-quinone oxidoreductase subunit I compare
PP_2378 -1.3 -3.9 Fe/S biogenesis protein NfuA compare
PP_4937 -1.2 -10.5 toluene tolerance protein compare
PP_4058 -1.2 -9.7 1,4-alpha-glucan branching enzyme compare
PP_1912 -1.2 -6.7 Phosphate acyltransferase compare
PP_0339 -1.2 -4.9 Pyruvate dehydrogenase E1 component compare
PP_5322 -1.1 -7.0 putative metal ion transporter compare
PP_2322 -1.1 -4.7 Major outer membrane lipoprotein compare
PP_4121 -1.1 -5.9 NADH-quinone oxidoreductase subunit C/D compare
PP_4098 -1.0 -3.2 UvrABC system protein C compare
PP_1493 -1.0 -3.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4131 -1.0 -5.9 NADH-quinone oxidoreductase subunit N compare
PP_4122 -0.9 -3.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4124 -0.9 -4.8 NADH-quinone oxidoreductase subunit G compare
PP_5162 -0.9 -4.9 conserved exported protein of unknown function compare
PP_1428 -0.9 -5.1 Sigma factor AlgU negative regulatory protein compare
PP_1318 -0.8 -5.9 Cytochrome b compare
PP_2646 -0.8 -4.5 conserved protein of unknown function compare
PP_4130 -0.8 -4.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4804 -0.8 -1.7 RlpA-like lipoprotein compare
PP_4917 -0.8 -4.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4789 -0.8 -4.7 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5748 -0.8 -2.0 cytochrome c heme lyase subunit compare
PP_0832 -0.8 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0856 -0.8 -1.3 conserved lipoprotein of unknown function compare
PP_2214 -0.8 -3.9 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4989 -0.8 -3.3 Protein PilJ compare
PP_5014 -0.8 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0218 -0.8 -6.1 Sensory box protein compare
PP_4261 -0.7 -4.6 cation-transporting P-type ATPase compare
PP_1214 -0.7 -2.2 putative transcriptional regulatory protein compare
PP_4265 -0.7 -2.2 DNA-binding transcriptional dual regulator compare
PP_5028 -0.7 -3.9 proline iminopeptidase compare
PP_2414 -0.7 -1.6 conserved exported protein of unknown function compare
PP_2217 -0.7 -2.0 enoyl-CoA hydratase compare
PP_2144 -0.7 -3.4 Transcriptional regulator, TetR family compare
PP_4726 -0.7 -1.5 Chaperone protein DnaJ compare
PP_0625 -0.7 -5.8 Chaperone protein ClpB compare
PP_4342 -0.7 -1.9 flagellar synthesis regulator, putative ATPase compare
PP_1319 -0.7 -4.0 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4988 -0.7 -4.2 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4199 -0.7 -1.8 putative Lipoprotein compare
PP_1734 -0.7 -2.6 Probable septum site-determining protein MinC compare
PP_5327 -0.7 -2.8 putative phosphate ABC transporter, permease subunit compare
PP_5183 -0.7 -4.1 glutamylpolyamine synthetase compare
PP_4696 -0.7 -4.3 Nitrogen regulation protein NR(I) compare
PP_2403 -0.7 -2.4 Chemotaxis protein CheY compare
PP_1215 -0.6 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_4723 -0.6 -2.4 Carbamoyl-phosphate synthase large chain compare
PP_5329 -0.6 -1.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3903 -0.6 -1.6 conserved protein of unknown function compare
PP_4482 -0.6 -3.0 Transcriptional regulator, AraC family compare
PP_0111 -0.6 -4.8 Electron transport protein SCO1/SenC compare
PP_1317 -0.6 -3.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4320 -0.6 -4.0 cytochrome c-type biogenesis protein compare
PP_0406 -0.6 -2.2 Nucleotidyltransferase family protein compare
PP_3555 -0.6 -4.6 putative Transmembrane sensor compare
PP_4828 -0.6 -1.6 Precorrin-8X methylmutase compare
PP_2302 -0.6 -3.7 DNA-binding, ATP-dependent protease compare
PP_3926 -0.6 -2.1 short-chain dehydrogenase compare
PP_1763 -0.6 -3.3 putative oxidoreductase compare
PP_0405 -0.6 -4.7 conserved protein of unknown function compare
PP_0434 -0.6 -3.2 Anhydro-N-acetylmuramic acid kinase compare
PP_2402 -0.6 -2.3 putative Sensor histidine kinase compare
PP_2581 -0.6 -2.1 conserved protein of unknown function compare
PP_3198 -0.6 -2.9 Ferredoxin, 2Fe-2S compare
PP_4505 -0.6 -3.9 Sensor histidine kinase compare
PP_4004 -0.6 -2.3 DNA translocase FtsK compare
PP_0435 -0.6 -3.4 Peptidase, M23/M37 family compare
PP_4379 -0.6 -3.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4268 -0.6 -1.2 nucleoid-associated broad specificity regulator compare
PP_1224 -0.6 -3.4 periplasmic subunit of the TolQRA transport system compare
PP_4994 -0.6 -1.2 conserved protein of unknown function compare
PP_4129 -0.5 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4259 -0.5 -4.1 Iron-sulfur cluster-binding protein compare
PP_0345 -0.5 -3.9 putative Heptose kinase WapP compare
PP_5110 -0.5 -2.2 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1355 -0.5 -4.3 Muropeptide permease AmpG compare
PP_2031 -0.5 -2.1 conserved protein of unknown function compare
PP_4370 -0.5 -3.7 Flagellar hook-basal body complex protein FliE compare
PP_5310 -0.5 -3.4 junction-specific ATP-dependent DNA helicase compare
PP_0855 -0.5 -2.0 conserved protein of unknown function compare
PP_2379 -0.5 -2.5 putative cytochrome oxidase biogenesis protein compare
PP_1733 -0.5 -1.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_1232 -0.5 -2.5 conserved exported protein of unknown function compare
PP_5054 -0.5 -1.6 glutaredoxin 3 compare
PP_2945 -0.5 -3.6 putative sensor histidine kinase/response regulator compare
PP_4832 -0.5 -3.1 Precorrin-6x reductase compare
PP_4824 -0.5 -3.4 Sensor histidine kinase/response regulator compare
PP_4471 -0.5 -1.9 Magnesium transporter compare
PP_1702 -0.5 -3.0 Recombination-associated protein RdgC compare
PP_4699 -0.5 -2.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0513 -0.5 -1.9 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0913 -0.5 -3.7 conserved exported protein of unknown function compare
PP_5328 -0.5 -1.0 putative phosphate transport system permease protein compare
PP_0888 -0.5 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_4997 -0.5 -1.3 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0984 -0.5 -2.5 conserved membrane protein of unknown function compare
PP_0126 -0.5 -2.4 Cytochrome c4 compare
PP_2944 -0.5 -4.1 Sensor histidine kinase compare
PP_3946 -0.5 -1.4 HTH-type transcriptional repressor NicR compare
PP_5083 -0.5 -1.7 putative Type IV pili biogenesis protein PilM compare
PP_3759 -0.5 -2.3 Methylesterase, CheB-like compare
PP_0914 -0.5 -3.8 GGDEF domain protein compare
PP_5095 -0.5 -0.8 pyrroline-5-carboxylate reductase compare
PP_5533 -0.5 -1.6 conserved protein of unknown function compare
PP_0125 -0.4 -2.6 putative cytochrome c-type protein compare
PP_5313 -0.4 -1.1 DNA-binding protein HU-alpha compare
PP_2332 -0.4 -2.5 conserved exported protein of unknown function compare
PP_2442 -0.4 -2.0 conserved protein of unknown function, DUF480 family compare
PP_0949 -0.4 -3.1 putative ATP-binding protein UPF0042 compare
PP_4836 -0.4 -2.3 conserved exported protein of unknown function compare
PP_5039 -0.4 -2.3 conserved protein of unknown function compare
PP_2942 -0.4 -4.0 Response regulator compare
PP_5230 -0.4 -2.3 Tyrosine recombinase XerC compare
PP_0123 -0.4 -3.4 DNA polymerase I, 5 compare
PP_0910 -0.4 -3.3 conserved exported protein of unknown function compare
PP_4369 -0.4 -3.6 Flagellar M-ring protein compare
PP_5267 -0.4 -1.4 putative cytochrome c5 compare
PP_4722 -0.4 -2.3 Transcription elongation factor GreA compare
PP_0775 -0.4 -1.4 conserved protein of unknown function compare
PP_4358 -0.4 -3.3 flagellar synthesis, switching and energizing component compare
PP_0887 -0.4 -2.9 Sensor histidine kinase compare
PP_0789 -0.4 -2.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0760 -0.4 -2.7 conserved membrane protein of unknown function compare
PP_1164 -0.4 -1.0 Transcriptional regulator, LysR family compare
PP_4835 -0.4 -1.3 conserved exported protein of unknown function compare
PP_4546 -0.4 -2.1 ATP-dependent helicase HrpA compare
PP_4477 -0.4 -3.1 N-succinylarginine dihydrolase compare
PP_5000 -0.4 -1.1 peptidase component of the ATP-dependent HslVU protease compare
PP_4263 -0.4 -2.1 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4143 -0.4 -2.1 conserved protein of unknown function compare
PP_1513 -0.4 -1.2 Ribosomal RNA small subunit methyltransferase J compare
PP_1268 -0.4 -1.2 putative HtrA suppressor protein sohA compare
PP_1764 -0.4 -1.1 Phosphoglycolate phosphatase 2 compare
PP_5090 -0.4 -0.9 putative cell division protein compare
PP_0697 -0.4 -2.9 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_5045 -0.4 -2.3 tRNA sulfurtransferase compare
PP_1714 -0.4 -3.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_4253 -0.4 -1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_4120 -0.4 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_1554 -0.4 -1.6 conserved protein of unknown function compare
PP_2107 -0.4 -1.0 conserved protein of unknown function compare
PP_5100 -0.4 -1.8 dITP/XTP pyrophosphatase compare
PP_2323 -0.4 -2.2 conserved protein of unknown function compare
PP_4593 -0.4 -1.6 conserved protein of unknown function compare
PP_3649 -0.4 -1.5 Transcriptional regulator, GntR family compare
PP_4066 -0.4 -1.7 methylglutaconyl-CoA hydratase compare
PP_4910 -0.4 -1.6 conserved protein of unknown function compare
PP_3758 -0.4 -2.2 Response regulator/sensor histidine kinase compare
PP_0377 -0.4 -1.6 coenzyme PQQ synthesis protein D compare
PP_4892 -0.4 -2.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4838 -0.4 -3.2 Outer membrane copper receptor OprC compare
PP_5007 -0.4 -1.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5652 -0.4 -1.8 conserved protein of unknown function, phage origin compare
PP_0065 -0.4 -1.9 NAD-binding component of TrK potassium transporter compare
PP_4475 -0.4 -2.6 succinylglutamate desuccinylase compare
PP_4378 -0.4 -3.5 flagellin, filament structural protein compare
PP_4569 -0.4 -1.8 conserved protein of unknown function compare
PP_5507 -0.4 -2.3 protein of unknown function compare
PP_0900 -0.4 -1.8 PAP2 family protein compare
PP_4341 -0.4 -2.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_3036 -0.4 -2.0 conserved protein of unknown function compare
PP_1186 -0.4 -0.9 two component system DNA-binding transcriptional dual regulator compare
PP_5198 -0.4 -2.0 conserved protein of unknown function compare
PP_2304 -0.4 -2.6 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_2132 -0.4 -2.5 Universal stress protein compare
PP_4179 -0.4 -3.0 Chaperone protein HtpG compare
PP_0908 -0.4 -2.6 conserved exported protein of unknown function compare
PP_1598 -0.4 -2.3 regulatory intramembrane protein RIP zinc protease compare
PP_2145 -0.4 -1.4 beta-N-acetylglucosaminidase compare
PP_4361 -0.4 -2.8 Flagellar hook-length control protein FliK compare
PP_4380 -0.4 -3.3 Flagellar hook-associated protein FlgL compare
PP_4204 -0.4 -1.6 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2087 -0.4 -1.3 CmpX protein compare
PP_2820 -0.3 -1.5 HTH-type transcriptional regulator nfxB compare
PP_2000 -0.3 -0.8 amidophosphoribosyl transferase compare
PP_1366 -0.3 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_1994 -0.3 -1.2 tRNA pseudouridine (38-40)synthase compare
PP_4720 -0.3 -1.3 putative RNA binding protein compare
PP_0484 -0.3 -2.5 transporter of an unknown substrate compare
PP_0909 -0.3 -2.9 conserved exported protein of unknown function compare
PP_4368 -0.3 -2.1 flagellar motor switch protein compare
PP_4389 -0.3 -2.9 Flagellar basal-body rod modification protein FlgD compare
PP_0627 -0.3 -1.3 conserved protein of unknown function compare
PP_3638 -0.3 -2.7 putative Acyl-CoA dehydrogenase compare
PP_5303 -0.3 -2.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4009 -0.3 -1.5 ATP-dependent Clp protease adapter protein ClpS compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature experiments