Experiment set49S101 for Pseudomonas putida KT2440

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PP_3484 -5.2 -6.9 Response regulator receiver protein compare
PP_5155 -4.7 -5.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4909 -4.6 -10.5 phosphoserine phosphatase compare
PP_0164 -4.3 -9.3 conserved protein of unknown function compare
PP_4696 -4.2 -9.6 Nitrogen regulation protein NR(I) compare
PP_4936 -4.2 -10.8 O-antigen polymerase compare
PP_5095 -4.1 -1.8 pyrroline-5-carboxylate reductase compare
PP_5289 -3.6 -5.8 Acetylglutamate kinase compare
PP_4944 -3.4 -4.0 Carbamoyltransferase compare
PP_3821 -3.4 -15.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4726 -3.3 -2.9 Chaperone protein DnaJ compare
PP_4680 -3.3 -15.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -3.3 -16.6 Argininosuccinate synthase compare
PP_0872 -3.2 -8.4 Peptide chain release factor 3 compare
PP_4938 -3.2 -11.5 putative Glycosyl transferase compare
PP_4058 -3.2 -14.2 1,4-alpha-glucan branching enzyme compare
PP_0339 -3.1 -2.2 Pyruvate dehydrogenase E1 component compare
PP_2645 -3.1 -11.5 magnesium transporter, ATP-dependent compare
PP_3511 -3.1 -10.1 Branched-chain-amino-acid aminotransferase compare
PP_0184 -3.0 -10.6 Argininosuccinate lyase compare
PP_4943 -3.0 -2.4 putative Glycosyl transferase compare
PP_0082 -2.9 -6.6 tryptophan synthase alpha chain compare
PP_2378 -2.9 -3.7 Fe/S biogenesis protein NfuA compare
PP_0393 -2.9 -3.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5185 -2.8 -8.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4766 -2.7 -8.3 ATP-dependent RNA helicase compare
PP_0691 -2.7 -1.8 Glutamate 5-kinase compare
PP_4941 -2.7 -4.5 conserved exported protein of unknown function compare
PP_4517 -2.7 -2.8 conserved protein of unknown function compare
PP_4130 -2.6 -6.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4131 -2.6 -8.9 NADH-quinone oxidoreductase subunit N compare
PP_1224 -2.5 -7.0 periplasmic subunit of the TolQRA transport system compare
PP_4940 -2.5 -8.4 Putative glycosyltransferase compare
PP_5014 -2.5 -4.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4679 -2.4 -6.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4342 -2.4 -3.6 flagellar synthesis regulator, putative ATPase compare
PP_2903 -2.3 -2.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5303 -2.3 -6.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4129 -2.3 -5.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1734 -2.3 -3.8 Probable septum site-determining protein MinC compare
PP_4340 -2.3 -4.0 response regulator for chemotactic signal transduction compare
PP_4122 -2.3 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4124 -2.3 -6.4 NADH-quinone oxidoreductase subunit G compare
PP_1872 -2.2 -10.9 glutamate-pyruvate aminotransferase compare
PP_1079 -2.2 -7.6 Ornithine carbamoyltransferase compare
PP_5216 -2.2 -2.4 exopolyphosphatase compare
PP_2001 -2.2 -10.0 O-succinylhomoserine sulfhydrylase compare
PP_0083 -2.2 -6.5 tryptophan synthase beta chain compare
PP_4120 -2.2 -5.3 NADH-quinone oxidoreductase subunit B compare
PP_5098 -2.2 -9.8 methionine biosynthesis protein MetW compare
PP_2646 -2.2 -3.6 conserved protein of unknown function compare
PP_5128 -2.2 -8.3 Dihydroxy-acid dehydratase compare
PP_4678 -2.1 -11.1 Ketol-acid reductoisomerase compare
PP_2336 -2.1 -4.5 aconitate hydratase 1 compare
PP_0435 -2.1 -6.3 Peptidase, M23/M37 family compare
PP_4937 -2.1 -6.1 toluene tolerance protein compare
PP_0420 -2.1 -11.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1988 -2.1 -7.7 3-isopropylmalate dehydrogenase compare
PP_4880 -2.1 -10.6 exoribonuclease R compare
PP_5097 -2.1 -12.2 homoserine O-acetyltransferase compare
PP_0406 -2.1 -3.0 Nucleotidyltransferase family protein compare
PP_4824 -2.1 -7.5 Sensor histidine kinase/response regulator compare
PP_4126 -2.1 -2.6 NADH-quinone oxidoreductase subunit I compare
PP_4121 -2.1 -7.3 NADH-quinone oxidoreductase subunit C/D compare
PP_1995 -2.0 -10.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0547 -2.0 -5.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0959 -2.0 -2.9 phospholipid ABC transporter compare
PP_4375 -2.0 -8.0 flagellar chaperone, inhibits premature FliC assembly compare
PP_1779 -1.9 -4.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2402 -1.9 -2.3 putative Sensor histidine kinase compare
PP_3649 -1.9 -3.2 Transcriptional regulator, GntR family compare
PP_1733 -1.9 -3.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4337 -1.9 -7.2 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4642 -1.9 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_3519 -1.9 -1.3 putative Lipoprotein compare
PP_0422 -1.8 -6.2 Indole-3-glycerol phosphate synthase compare
PP_0962 -1.8 -3.2 toluene-tolerance protein compare
PP_2214 -1.8 -5.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0290 -1.8 -6.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2145 -1.8 -3.2 beta-N-acetylglucosaminidase compare
PP_1237 -1.7 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4917 -1.7 -4.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2862 -1.7 -7.3 Undecaprenyl-diphosphatase compare
PP_1589 -1.7 -7.9 uridylyltransferase compare
PP_4785 -1.7 -4.8 conserved exported protein of unknown function compare
PP_1994 -1.7 -2.4 tRNA pseudouridine (38-40)synthase compare
PP_4396 -1.7 -4.5 conserved protein of unknown function compare
PP_4379 -1.7 -5.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4700 -1.7 -1.1 pantothenate synthetase compare
PP_4532 -1.6 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1912 -1.6 -3.5 Phosphate acyltransferase compare
PP_1022 -1.6 -6.8 glucose 6-phosphate-1-dehydrogenase compare
PP_4546 -1.6 -4.6 ATP-dependent helicase HrpA compare
PP_0417 -1.6 -10.8 Anthranilate synthase component 1 compare
PP_2088 -1.6 -4.0 RNA polymerase sigma factor SigX compare
PP_4338 -1.6 -6.3 Chemotaxis histidine kinase CheA compare
PP_4993 -1.6 -3.7 Glutathione synthetase compare
PP_1317 -1.6 -4.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1318 -1.6 -7.3 Cytochrome b compare
PP_0293 -1.6 -1.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4392 -1.6 -5.4 chemotaxis protein methyltransferase compare
PP_0833 -1.5 -1.0 queuine tRNA-ribosyltransferase compare
PP_0951 -1.5 -7.9 Ribosome hibernation promoting factor compare
PP_1362 -1.5 -4.2 pyruvate kinase II compare
PP_4265 -1.5 -2.4 DNA-binding transcriptional dual regulator compare
PP_0421 -1.5 -5.1 Anthranilate phosphoribosyltransferase compare
PP_5502 -1.5 -5.6 ribosome modulation factor compare
PP_4720 -1.5 -2.3 putative RNA binding protein compare
PP_4268 -1.5 -1.1 nucleoid-associated broad specificity regulator compare
PP_4695 -1.5 -8.0 Sensory box histidine kinase compare
PP_0967 -1.5 -7.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4376 -1.5 -9.9 flagellar filament capping protein compare
PP_1783 -1.5 -2.1 dTDP-glucose pyrophosphorylase compare
PP_1702 -1.4 -5.0 Recombination-associated protein RdgC compare
PP_2302 -1.4 -5.7 DNA-binding, ATP-dependent protease compare
PP_1906 -1.4 -3.4 ribosomal large subunit pseudouridine synthase C compare
PP_0949 -1.4 -5.4 putative ATP-binding protein UPF0042 compare
PP_4591 -1.4 -3.9 Ribonuclease D compare
PP_1898 -1.4 -0.8 MotA/TolQ/ExbB proton channel family protein compare
PP_4879 -1.4 -3.5 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_5232 -1.4 -2.3 conserved protein of unknown function compare
PP_4722 -1.4 -3.7 Transcription elongation factor GreA compare
PP_0719 -1.4 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1664 -1.4 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_0513 -1.4 -2.6 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1355 -1.4 -7.5 Muropeptide permease AmpG compare
PP_4143 -1.4 -3.5 conserved protein of unknown function compare
PP_1468 -1.4 -1.7 Tyrosine recombinase XerD compare
PP_0292 -1.4 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3508 -1.3 -3.2 Protein CobW compare
PP_0753 -1.3 -5.3 putative Lipoprotein compare
PP_3052 -1.3 -1.1 conserved protein of unknown function compare
PP_4380 -1.3 -9.2 Flagellar hook-associated protein FlgL compare
PP_1999 -1.3 -2.0 membrane protein required for colicin V production compare
PP_4994 -1.3 -0.9 conserved protein of unknown function compare
PP_2433 -1.3 -1.5 conserved protein of unknown function compare
PP_0120 -1.3 -6.5 putative zinc ABC transporter compare
PP_4008 -1.3 -3.0 ATP-dependent serine protease compare
PP_0758 -1.3 -4.7 conserved protein of unknown function compare
PP_1778 -1.3 -3.7 Lipopolysaccharide ABC export system, permease protein compare
PP_1826 -1.3 -2.9 Hydrolase, isochorismatase family compare
PP_2337 -1.3 -2.2 aconitate isomerase compare
PP_4942 -1.3 -1.7 conserved protein of unknown function compare
PP_1985 -1.3 -3.7 3-isopropylmalate dehydratase large subunit compare
PP_5346 -1.3 -6.4 pyruvate carboxylase subunit B compare
PP_2327 -1.2 -8.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0434 -1.2 -3.9 Anhydro-N-acetylmuramic acid kinase compare
PP_5146 -1.2 -5.8 RNA pyrophosphohydrolase compare
PP_4724 -1.2 -0.8 Carbamoyl-phosphate synthase small chain compare
PP_0965 -1.2 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1986 -1.2 -2.4 3-isopropylmalate dehydratase small subunit compare
PP_5350 -1.2 -2.5 Transcriptional regulator, RpiR family compare
PP_0735 -1.2 -1.1 molybdopterin-synthase adenylyltransferase compare
PP_4386 -1.2 -4.4 flagellar basal-body rod protein FlgF compare
PP_0966 -1.2 -6.8 Histidinol dehydrogenase compare
PP_4004 -1.2 -2.6 DNA translocase FtsK compare
PP_3924 -1.2 -2.6 conserved protein of unknown function compare
PP_1036 -1.2 -7.9 membrane-bound lytic murein transglycosylase F compare
PP_4341 -1.2 -4.9 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4804 -1.2 -0.8 RlpA-like lipoprotein compare
PP_5015 -1.2 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5652 -1.2 -2.2 conserved protein of unknown function, phage origin compare
PP_4382 -1.2 -5.2 Peptidoglycan hydrolase FlgJ compare
PP_4261 -1.2 -3.8 cation-transporting P-type ATPase compare
PP_4481 -1.2 -5.4 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_4381 -1.2 -7.9 Flagellar hook-associated protein FlgK compare
PP_1232 -1.2 -3.2 conserved exported protein of unknown function compare
PP_0063 -1.2 -3.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5045 -1.1 -3.7 tRNA sulfurtransferase compare
PP_4378 -1.1 -7.9 flagellin, filament structural protein compare
PP_2403 -1.1 -1.3 Chemotaxis protein CheY compare
PP_4723 -1.1 -0.8 Carbamoyl-phosphate synthase large chain compare
PP_0960 -1.1 -4.7 phospholipid ABC transporter binding protein compare
PP_5347 -1.1 -6.9 pyruvate carboxylase subunit A compare
PP_4383 -1.1 -4.6 Flagellar P-ring protein compare
PP_5514 -1.1 -3.6 conserved protein of unknown function compare
PP_4561 -1.1 -0.8 stress response protein compare
PP_4388 -1.1 -8.0 Flagellar hook protein FlgE compare
PP_0961 -1.1 -5.6 toluene tolerance protein compare
PP_5310 -1.1 -5.1 junction-specific ATP-dependent DNA helicase compare
PP_3999 -1.1 -4.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0291 -1.1 -2.5 conserved protein of unknown function compare
PP_0405 -1.1 -6.3 conserved protein of unknown function compare
PP_5217 -1.1 -8.0 Polyphosphate kinase compare
PP_5327 -1.1 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_2388 -1.1 -2.9 Transporter, LysE family compare
PP_1025 -1.1 -7.0 2-isopropylmalate synthase compare
PP_1208 -1.1 -1.3 conserved protein of unknown function, SlyX family compare
PP_0185 -1.1 -3.4 Positive alginate biosynthesis regulatory protein compare
PP_2029 -1.1 -2.6 von Willebrand factor type A domain protein compare
PP_5294 -1.1 -4.2 Ribonuclease PH compare
PP_5076 -1.1 -7.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_5328 -1.1 -0.9 putative phosphate transport system permease protein compare
PP_5311 -1.1 -5.1 putative signal transduction protein compare
PP_1428 -1.1 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_5456 -1.1 -1.1 conserved protein of unknown function compare
PP_5324 -1.1 -1.1 Response regulator compare
PP_0978 -1.1 -2.2 conserved protein of unknown function compare
PP_5295 -1.1 -1.6 conserved protein of unknown function compare
PP_3874 -1.0 -2.6 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days across organisms