Experiment set48S60 for Pseudomonas putida KT2440

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PP_3239 -6.5 -3.1 putative cointegrate resolution protein T Tn4652 compare
PP_0683 -6.4 -3.5 conserved protein of unknown function compare
PP_4223 -6.1 -2.9 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4835 -5.8 -2.8 conserved exported protein of unknown function compare
PP_2322 -5.4 -3.7 Major outer membrane lipoprotein compare
PP_3098 -5.0 -1.4 conserved protein of unknown function compare
PP_4271 -4.9 -1.4 conserved protein of unknown function compare
PP_5331 -4.8 -3.3 Long-chain acyl-CoA thioester hydrolase compare
PP_3519 -4.7 -1.3 putative Lipoprotein compare
PP_0022 -4.6 -1.3 hypothetical protein compare
PP_1237 -4.3 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4094 -4.3 -2.7 conserved protein of unknown function compare
PP_0001 -4.1 -2.3 probable chromosome-partitioning protein compare
PP_1528 -4.0 -1.6 conserved protein of unknown function compare
PP_4701 -4.0 -1.1 glucose-6-phosphate isomerase compare
PP_1829 -4.0 -2.3 Hydrolase, alpha/beta fold family compare
PP_2307 -3.8 -2.3 conserved protein of unknown function compare
PP_1224 -3.8 -6.3 periplasmic subunit of the TolQRA transport system compare
PP_4943 -3.8 -2.4 putative Glycosyl transferase compare
PP_1548 -3.7 -2.5 conserved protein of unknown function compare
PP_1764 -3.6 -2.5 Phosphoglycolate phosphatase 2 compare
PP_2710 -3.5 -5.0 conserved protein of unknown function compare
PP_1719 -3.5 -9.3 Tail-specific protease prc compare
PP_1468 -3.5 -2.4 Tyrosine recombinase XerD compare
PP_4981 -3.4 -2.5 polyisoprene-binding protein, acidic stress response factor compare
PP_5717 -3.3 -2.1 conserved protein of unknown function compare
PP_1994 -3.3 -3.2 tRNA pseudouridine (38-40)synthase compare
PP_2713 -3.3 -4.8 DNA-binding response regulator compare
PP_3346 -3.3 -2.1 Nickel transporter ATP-binding protein compare
PP_4126 -3.2 -2.2 NADH-quinone oxidoreductase subunit I compare
PP_1198 -3.2 -2.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2631 -3.1 -1.6 putative cellulose biosynthesis, BcsF/YhjT compare
PP_3037 -3.1 -2.4 C4-type zinc finger protein, DksA/TraR family compare
PP_0834 -3.1 -1.7 Sec translocation complex subunit YajC compare
PP_4941 -3.0 -2.1 conserved exported protein of unknown function compare
PP_1012 -3.0 -3.6 DNA-binding response regulator compare
PP_4129 -3.0 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1683 -2.9 -2.0 Transcriptional regulator, MarR family compare
PP_0630 -2.9 -1.2 DNA gyrase inhibitor YacG compare
PP_4787 -2.9 -2.2 putative protein with nucleoside triphosphate hydrolase domain compare
PP_2336 -2.9 -3.9 aconitate hydratase 1 compare
PP_5084 -2.9 -9.0 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2622 -2.8 -2.6 conserved protein of unknown function compare
PP_3821 -2.8 -6.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5055 -2.8 -3.4 Sulfurtransferase compare
PP_5423 -2.8 -2.1 conserved membrane protein of unknown function compare
PP_0938 -2.8 -10.8 conserved protein of unknown function compare
PP_2416 -2.8 -2.5 putative Iron ABC transporter, ATP-binding protein compare
PP_2087 -2.8 -2.4 CmpX protein compare
PP_4120 -2.8 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_1217 -2.7 -4.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3902 -2.7 -2.3 conserved protein of unknown function compare
PP_0888 -2.7 -1.8 Photosynthetic apparatus regulatory protein RegA compare
PP_0293 -2.7 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4130 -2.7 -5.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0127 -2.7 -3.4 Thiol:disulfide interchange protein compare
PP_4131 -2.7 -6.0 NADH-quinone oxidoreductase subunit N compare
PP_0666 -2.7 -3.2 conserved protein of unknown function compare
PP_1415 -2.7 -2.8 putative membrane associated enzyme subunit compare
PP_3762 -2.7 -3.5 Response regulator compare
PP_4669 -2.7 -2.4 OmpA family protein compare
PP_5093 -2.6 -1.0 twitching motility protein compare
PP_4891 -2.6 -4.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1734 -2.6 -1.8 Probable septum site-determining protein MinC compare
PP_4785 -2.6 -4.6 conserved exported protein of unknown function compare
PP_1733 -2.6 -1.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_2370 -2.6 -2.3 conserved protein of unknown function compare
PP_0206 -2.6 -2.3 Ferredoxin, 4Fe-4S compare
PP_4265 -2.5 -1.7 DNA-binding transcriptional dual regulator compare
PP_2280 -2.5 -2.1 conserved protein of unknown function compare
PP_1598 -2.5 -3.9 regulatory intramembrane protein RIP zinc protease compare
PP_2510 -2.4 -1.3 conserved protein of unknown function compare
PP_0126 -2.4 -2.7 Cytochrome c4 compare
PP_0377 -2.4 -1.4 coenzyme PQQ synthesis protein D compare
PP_5267 -2.4 -1.6 putative cytochrome c5 compare
PP_5486 -2.4 -1.4 conserved protein of unknown function compare
PP_5705 -2.4 -1.6 protein of unknown function compare
PP_5218 -2.4 -2.7 DedA family protein compare
PP_2189 -2.3 -1.7 conserved protein of unknown function compare
PP_0872 -2.3 -5.1 Peptide chain release factor 3 compare
PP_0775 -2.3 -2.1 conserved protein of unknown function compare
PP_0989 -2.3 -3.0 glycine cleavage system H protein 1 compare
PP_4994 -2.3 -1.6 conserved protein of unknown function compare
PP_0832 -2.3 -2.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4940 -2.3 -4.1 Putative glycosyltransferase compare
PP_1206 -2.3 -5.9 basic-amino-acid specific porin OprD compare
PP_5028 -2.3 -4.0 proline iminopeptidase compare
PP_4143 -2.3 -2.1 conserved protein of unknown function compare
PP_1214 -2.3 -2.3 putative transcriptional regulatory protein compare
PP_5621 -2.3 -1.3 protein of unknown function compare
PP_4121 -2.2 -5.4 NADH-quinone oxidoreductase subunit C/D compare
PP_0434 -2.2 -3.5 Anhydro-N-acetylmuramic acid kinase compare
PP_4253 -2.2 -2.1 cytochrome c oxidase subunit, cbb3-type compare
PP_5706 -2.2 -2.5 Sec translocation complex - SecG subunit compare
PP_1201 -2.2 -2.9 conserved exported protein of unknown function compare
PP_4124 -2.2 -5.1 NADH-quinone oxidoreductase subunit G compare
PP_4874 -2.2 -1.5 50S ribosomal protein L9 compare
PP_1778 -2.2 -3.8 Lipopolysaccharide ABC export system, permease protein compare
PP_3876 -2.2 -1.7 conserved protein of unknown function compare
PP_2313 -2.2 -1.4 conserved membrane protein of unknown function compare
PP_0787 -2.2 -2.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5583 -2.2 -1.4 conserved protein of unknown function compare
PP_0195 -2.2 -1.7 conserved protein of unknown function compare
PP_3924 -2.2 -1.8 conserved protein of unknown function compare
PP_1871 -2.1 -3.5 Protease HtpX compare
PP_4236 -2.1 -2.9 putative Thiol:disulfide interchange protein dsbE compare
PP_4504 -2.1 -1.4 conserved exported protein of unknown function compare
PP_1379 -2.0 -3.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_4058 -2.0 -6.3 1,4-alpha-glucan branching enzyme compare
PP_5155 -2.0 -2.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_t57 -2.0 -2.4 tRNA-Arg compare
PP_1216 -2.0 -1.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2526 -2.0 -1.8 conserved membrane protein of unknown function compare
PP_4902 -2.0 -1.4 Oligoribonuclease compare
PP_4342 -2.0 -2.8 flagellar synthesis regulator, putative ATPase compare
PP_3903 -2.0 -1.4 conserved protein of unknown function compare
PP_2196 -2.0 -1.3 agmatinase compare
PP_0833 -2.0 -1.4 queuine tRNA-ribosyltransferase compare
PP_1128 -2.0 -3.3 OmpA family protein compare
PP_1909 -2.0 -4.1 putative septum formation protein compare
PP_2678 -2.0 -2.6 putative Hydrolase compare
PP_4122 -1.9 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1362 -1.9 -3.0 pyruvate kinase II compare
PP_1799 -1.9 -5.5 GDP-mannose 4,6-dehydratase compare
PP_0258 -1.9 -1.9 regulator of murein cross-linking compare
PP_0809 -1.9 -4.4 disulfide bond formation protein B compare
PP_4109 -1.9 -2.2 conserved protein of unknown function compare
PP_4892 -1.9 -4.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2145 -1.9 -2.0 beta-N-acetylglucosaminidase compare
PP_3427 -1.9 -3.2 Multidrug efflux RND outer membrane protein OprN compare
PP_0753 -1.9 -3.6 putative Lipoprotein compare
PP_2773 -1.9 -1.1 conserved protein of unknown function compare
PP_0685 -1.8 -1.6 conserved protein of unknown function compare
PP_0393 -1.8 -2.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3715 -1.8 -1.8 Muconate cycloisomerase 1 compare
PP_4629 -1.8 -2.7 Sensory box protein compare
PP_3286 -1.8 -3.2 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1691 -1.8 -1.6 conserved protein of unknown function compare
PP_5712 -1.8 -2.9 conserved protein of unknown function compare
PP_4814 -1.8 -1.5 ATP-dependent protease La domain protein compare
PP_1202 -1.8 -6.1 putative enzyme involved in modification of phospholipids compare
PP_0719 -1.8 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4561 -1.8 -0.9 stress response protein compare
PP_4008 -1.8 -1.2 ATP-dependent serine protease compare
PP_0413 -1.8 -5.6 Polyamine ABC transporter, permease protein compare
PP_1633 -1.8 -1.9 conserved exported protein of unknown function compare
PP_4475 -1.8 -4.0 succinylglutamate desuccinylase compare
PP_4793 -1.8 -1.6 conserved protein of unknown function compare
PP_0900 -1.8 -1.7 PAP2 family protein compare
PP_4944 -1.7 -2.9 Carbamoyltransferase compare
PP_5748 -1.7 -1.2 cytochrome c heme lyase subunit compare
PP_1935 -1.7 -1.2 Transcriptional regulator, Cro/CI family compare
PP_5350 -1.7 -2.7 Transcriptional regulator, RpiR family compare
PP_1779 -1.7 -3.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5471 -1.7 -1.5 putative response regulator receiver protein compare
PP_0902 -1.7 -4.7 integral membrane sensor signal transduction histidine kinase compare
PP_4722 -1.7 -2.8 Transcription elongation factor GreA compare
PP_1325 -1.7 -3.1 putative lipoprotein compare
PP_5162 -1.7 -2.6 conserved exported protein of unknown function compare
PP_1813 -1.7 -2.3 ComEA-related protein compare
PP_4820 -1.7 -3.2 tRNA-dihydrouridine synthase B compare
PP_0063 -1.7 -2.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4214 -1.6 -2.1 pyoverdine biosynthesis related protein compare
PP_4880 -1.6 -6.4 exoribonuclease R compare
PP_3824 -1.6 -1.7 conserved exported protein of unknown function compare
PP_1428 -1.6 -2.0 Sigma factor AlgU negative regulatory protein compare
PP_0312 -1.6 -2.2 electron transfer flavoprotein, alpha subunit compare
PP_1664 -1.6 -2.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_1918 -1.6 -4.9 septation protein compare
PP_5525 -1.6 -1.3 conserved exported protein of unknown function compare
PP_1800 -1.6 -3.9 Oxidoreductase Rmd compare
PP_0339 -1.6 -2.6 Pyruvate dehydrogenase E1 component compare
PP_2708 -1.6 -3.4 conserved protein of unknown function compare
PP_5128 -1.6 -3.7 Dihydroxy-acid dehydratase compare
PP_2029 -1.6 -1.7 von Willebrand factor type A domain protein compare
PP_5711 -1.6 -1.8 protein of unknown function compare
PP_0949 -1.6 -3.1 putative ATP-binding protein UPF0042 compare
PP_4133 -1.5 -1.8 Transcriptional regulator-related protein compare
PP_4819 -1.5 -3.0 conserved protein of unknown function compare
PP_2943 -1.5 -2.6 putative Cytochrome c551 peroxidase compare
PP_0495 -1.5 -3.7 type 1 L-asparaginase compare
PP_3509 -1.5 -1.4 Glyoxalase family protein compare
PP_0901 -1.5 -2.9 DNA-binding response regulator compare
PP_3766 -1.5 -1.3 Lactoylglutathione lyase compare
PP_1028 -1.5 -1.6 Transcriptional regulator, LysR family compare
PP_2124 -1.5 -2.1 putative Glycosyl transferase compare
PP_0405 -1.5 -4.2 conserved protein of unknown function compare
PP_0691 -1.5 -1.4 Glutamate 5-kinase compare
PP_2046 -1.5 -2.2 Transcriptional regulator, LysR family compare
PP_5017 -1.5 -0.8 Sec-independent protein translocase protein TatB compare
PP_t12 -1.4 -0.8 tRNA-Thr compare
PP_2088 -1.4 -1.9 RNA polymerase sigma factor SigX compare
PP_0903 -1.4 -1.8 conserved protein of unknown function compare
PP_2695 -1.4 -2.0 Transcriptional regulator, LysR family compare
PP_0856 -1.4 -1.0 conserved lipoprotein of unknown function compare
PP_5654 -1.4 -1.6 putative phosphotriesterase compare
PP_4262 -1.4 -1.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3425 -1.4 -2.5 Efflux transporter RND family, MFP subunit compare
PP_2320 -1.4 -3.5 conserved exported protein of unknown function compare
PP_0995 -1.4 -2.6 conserved membrane protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days across organisms