Experiment set47S252 for Pseudomonas putida KT2440

Compare to:

L-Phenylalanine 5 mM carbon source

200 most important genes:

  gene name fitness t score description  
PP_3433 -5.9 -4.1 4-hydroxyphenylpyruvate dioxygenase conserved
PP_4364 -5.3 -3.7 putative Anti-sigma F factor antagonist compare
PP_3434 -5.2 -3.6 conserved protein of unknown function compare
PP_5104 -5.0 -3.4 thiazole synthase compare
PP_4922 -4.8 -7.3 Phosphomethylpyrimidine synthase compare
PP_3590 -4.7 -3.3 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4620 -4.5 -5.4 Fumarylacetoacetase compare
PP_1381 -4.3 -2.1 4-carboxymuconolactone decarboxylase compare
PP_4619 -4.3 -6.6 Maleylacetoacetate isomerase conserved
PP_4621 -4.2 -9.3 Homogentisate 1,2-dioxygenase conserved
PP_3123 -4.1 -7.9 acetoacetyl CoA-transferase (subunit B) conserved
PP_3121 -4.0 -4.8 transcriptional regulator, LysR family compare
PP_0232 -4.0 -1.9 ATP-binding taurine transporter subunit compare
PP_4354 -3.9 -5.3 flagellar export apparatus subunit compare
PP_1377 -3.8 -6.3 beta-ketoadipyl-CoA thiolase compare
PP_3484 -3.6 -5.6 Response regulator receiver protein compare
PP_3952 -3.6 -8.6 3-oxoadipate CoA-transferase subunit A compare
PP_0164 -3.5 -2.4 conserved protein of unknown function compare
PP_1233 -3.5 -2.4 sulfurtransferase compare
PP_4782 -3.3 -3.9 Phosphomethylpyrimidine kinase compare
PP_3726 -3.1 -2.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_1348 -3.1 -5.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3122 -3.0 -6.6 acetoacetyl CoA-transferase (subunit A) compare
PP_1231 -3.0 -2.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -2.9 -2.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3080 -2.9 -6.2 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_3951 -2.9 -5.2 3-oxoadipate CoA-transferase subunit A compare
PP_0735 -2.8 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_4489 -2.8 -10.7 sigma-54 dependent transcriptional regulator conserved
PP_5303 -2.8 -3.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4340 -2.7 -3.2 response regulator for chemotactic signal transduction compare
PP_4495 -2.7 -12.5 aromatic amino acid transport protein conserved
PP_1079 -2.6 -1.8 Ornithine carbamoyltransferase compare
PP_1268 -2.6 -2.5 putative HtrA suppressor protein sohA compare
PP_4355 -2.5 -2.7 flagellar export apparatus subunit compare
PP_0914 -2.5 -9.0 GGDEF domain protein compare
PP_2070 -2.4 -2.7 Transcriptional regulator, AraC family compare
PP_1733 -2.4 -3.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_4383 -2.4 -3.2 Flagellar P-ring protein compare
PP_4699 -2.4 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4937 -2.3 -2.2 toluene tolerance protein compare
PP_4394 -2.2 -7.0 flagella basal body P-ring formation protein compare
PP_2526 -2.2 -2.4 conserved membrane protein of unknown function compare
PP_1632 -2.2 -1.9 conserved protein of unknown function compare
PP_4381 -2.2 -10.5 Flagellar hook-associated protein FlgK compare
PP_4369 -2.2 -7.1 Flagellar M-ring protein compare
PP_4376 -2.1 -9.9 flagellar filament capping protein compare
PP_3821 -2.1 -6.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3790 -2.1 -6.3 diaminopimelate epimerase compare
PP_1623 -2.1 -5.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_4370 -2.0 -4.2 Flagellar hook-basal body complex protein FliE compare
PP_4396 -2.0 -1.8 conserved protein of unknown function compare
PP_4352 -2.0 -9.3 flagellin export apparatus, substrate specificity protein compare
PP_4341 -2.0 -8.1 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4390 -2.0 -7.2 flagellar basal-body rod protein FlgC compare
PP_4338 -1.9 -5.7 Chemotaxis histidine kinase CheA compare
PP_3527 -1.9 -8.6 Transcriptional regulator, TetR family compare
PP_4380 -1.9 -10.2 Flagellar hook-associated protein FlgL compare
PP_4358 -1.9 -6.7 flagellar synthesis, switching and energizing component compare
PP_4391 -1.9 -6.2 flagellar basal-body rod protein FlgB compare
PP_4368 -1.9 -5.3 flagellar motor switch protein compare
PP_0435 -1.9 -4.1 Peptidase, M23/M37 family compare
PP_4004 -1.8 -4.1 DNA translocase FtsK compare
PP_4993 -1.8 -1.8 Glutathione synthetase compare
PP_2390 -1.8 -6.2 Transcriptional regulator, LysR family compare
PP_0834 -1.8 -2.2 Sec translocation complex subunit YajC compare
PP_4388 -1.8 -9.6 Flagellar hook protein FlgE compare
PP_4367 -1.8 -3.6 Flagellar assembly protein FliH compare
PP_4532 -1.8 -2.0 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4344 -1.8 -8.1 flagellar export pore protein compare
PP_4353 -1.8 -6.2 Flagellar biosynthetic protein fliR compare
PP_4386 -1.7 -3.9 flagellar basal-body rod protein FlgF compare
PP_1303 -1.7 -3.4 Sulfate adenylyltransferase subunit 2 compare
PP_4356 -1.7 -3.7 Flagellar protein FliO compare
PP_4382 -1.7 -6.7 Peptidoglycan hydrolase FlgJ compare
PP_3052 -1.7 -1.6 conserved protein of unknown function compare
PP_4384 -1.7 -8.8 Flagellar L-ring protein compare
PP_4561 -1.7 -1.1 stress response protein compare
PP_4366 -1.7 -9.9 flagellum-specific ATP synthase compare
PP_5659 -1.7 -2.8 protein of unknown function compare
PP_1804 -1.7 -5.6 Glycosyl transferase WbpL compare
PP_4373 -1.7 -9.5 Transcriptional regulator FleQ compare
PP_1318 -1.7 -3.3 Cytochrome b compare
PP_4904 -1.7 -5.9 Flagellar motor rotation protein compare
PP_4940 -1.6 -5.7 Putative glycosyltransferase compare
PP_0356 -1.6 -1.6 malate synthase G compare
PP_1553 -1.6 -2.6 conserved protein of unknown function compare
PP_1799 -1.6 -8.3 GDP-mannose 4,6-dehydratase compare
PP_4385 -1.6 -4.6 flagellar basal-body rod protein FlgG compare
PP_4378 -1.6 -10.1 flagellin, filament structural protein compare
PP_1367 -1.6 -4.2 formyltetrahydrofolate hydrolase compare
PP_0362 -1.6 -6.4 Biotin synthase compare
PP_5212 -1.6 -5.6 Oxidoreductase, iron-sulfur-binding compare
PP_4361 -1.6 -4.3 Flagellar hook-length control protein FliK compare
PP_4936 -1.5 -5.3 O-antigen polymerase compare
PP_4375 -1.5 -4.2 flagellar chaperone, inhibits premature FliC assembly compare
PP_1304 -1.5 -4.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4285 -1.5 -3.3 5-hydroxyisourate hydrolase compare
PP_1224 -1.5 -3.3 periplasmic subunit of the TolQRA transport system compare
PP_0846 -1.5 -1.0 DnaK-like molecular chaperone specific for IscU compare
PP_2388 -1.4 -3.0 Transporter, LysE family compare
PP_3555 -1.4 -4.2 putative Transmembrane sensor compare
PP_4695 -1.4 -6.5 Sensory box histidine kinase compare
PP_1513 -1.4 -2.4 Ribosomal RNA small subunit methyltransferase J compare
PP_1878 -1.4 -5.4 conserved protein of unknown function compare
PP_2302 -1.4 -2.9 DNA-binding, ATP-dependent protease compare
PP_1088 -1.4 -1.0 Argininosuccinate synthase compare
PP_1426 -1.4 -6.8 L-aspartate oxidase compare
PP_0406 -1.4 -2.2 Nucleotidyltransferase family protein compare
PP_4892 -1.4 -3.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1164 -1.4 -2.3 Transcriptional regulator, LysR family compare
PP_1568 -1.4 -1.4 conserved protein of unknown function compare
PP_3378 -1.4 -1.7 putative 2-ketogluconokinase compare
PP_4726 -1.4 -1.5 Chaperone protein DnaJ compare
PP_2414 -1.4 -1.8 conserved exported protein of unknown function compare
PP_4392 -1.4 -3.6 chemotaxis protein methyltransferase compare
PP_4116 -1.4 -5.5 isocitrate lyase compare
PP_4389 -1.4 -6.1 Flagellar basal-body rod modification protein FlgD compare
PP_4952 -1.4 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1548 -1.3 -2.0 conserved protein of unknown function compare
PP_4943 -1.3 -1.5 putative Glycosyl transferase compare
PP_4824 -1.3 -4.0 Sensor histidine kinase/response regulator compare
PP_1493 -1.3 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3035 -1.3 -2.1 conserved protein of unknown function compare
PP_1994 -1.3 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_4359 -1.3 -5.3 Flagellar protein FliL compare
PP_5035 -1.3 -4.2 Histidine utilization repressor compare
PP_4938 -1.3 -5.3 putative Glycosyl transferase compare
PP_4060 -1.3 -6.3 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4008 -1.3 -1.8 ATP-dependent serine protease compare
PP_2773 -1.3 -1.3 conserved protein of unknown function compare
PP_1802 -1.3 -7.9 glycosyl transferase compare
PP_5236 -1.3 -5.4 conserved protein of unknown function compare
PP_1364 -1.3 -4.5 conserved exported protein of unknown function compare
PP_1826 -1.3 -2.3 Hydrolase, isochorismatase family compare
PP_1780 -1.3 -9.4 putative mannosyltransferase compare
PP_2001 -1.3 -1.5 O-succinylhomoserine sulfhydrylase compare
PP_4662 -1.3 -2.5 conserved protein of unknown function compare
PP_4917 -1.3 -2.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4109 -1.3 -2.2 conserved protein of unknown function compare
PP_1346 -1.3 -3.2 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4365 -1.3 -4.5 Flagellar protein FliJ compare
PP_3198 -1.3 -2.2 Ferredoxin, 2Fe-2S compare
PP_0184 -1.3 -0.9 Argininosuccinate lyase compare
PP_4696 -1.3 -1.5 Nitrogen regulation protein NR(I) compare
PP_0236 -1.2 -1.8 NAD(P)H-dependent FMN reductase subunit compare
PP_5337 -1.2 -3.5 LysR family transcriptional regulator compare
PP_2145 -1.2 -1.7 beta-N-acetylglucosaminidase compare
PP_4503 -1.2 -2.7 DNA-binding response regulator compare
PP_5106 -1.2 -2.4 conserved inner membrane protein compare
PP_4317 -1.2 -2.1 conserved protein of unknown function compare
PP_4337 -1.2 -4.1 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0825 -1.2 -3.0 phosphonates import ATP-binding protein compare
PP_1778 -1.2 -3.9 Lipopolysaccharide ABC export system, permease protein compare
PP_4377 -1.2 -2.6 putative Flagellin FlaG compare
PP_2028 -1.2 -3.2 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_0608 -1.2 -3.5 putative type 4 fimbrial biogenesis protein compare
PP_3603 -1.2 -3.4 Transcriptional regulator, GntR family compare
PP_3880 -1.2 -1.4 conserved exported protein of unknown function compare
PP_4122 -1.2 -0.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1110 -1.2 -3.1 serine acetyltransferase compare
PP_5232 -1.2 -1.7 conserved protein of unknown function compare
PP_0653 -1.2 -1.3 conserved protein of unknown function compare
PP_0261 -1.2 -2.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2868 -1.2 -4.3 Transcriptional regulator, Cro/CI family compare
PP_4890 -1.2 -0.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_4480 -1.1 -3.9 arginine N-succinyltransferase, subunit alpha compare
PP_1801 -1.1 -5.2 Glycosyl transferase WbpY compare
PP_1776 -1.1 -6.2 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_2088 -1.1 -1.7 RNA polymerase sigma factor SigX compare
PP_1198 -1.1 -1.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4332 -1.1 -2.8 Chemotaxis protein CheW compare
PP_2222 -1.1 -2.7 conserved protein of unknown function compare
PP_1317 -1.1 -2.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5313 -1.1 -1.3 DNA-binding protein HU-alpha compare
PP_4984 -1.1 -5.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1805 -1.1 -7.1 Polysaccharide biosynthesis protein compare
PP_4343 -1.1 -3.1 Flagellar biosynthesis protein FlhF compare
PP_4591 -1.1 -2.3 Ribonuclease D compare
PP_5227 -1.1 -5.9 diaminopimelate decarboxylase compare
PP_0417 -1.1 -0.8 Anthranilate synthase component 1 compare
PP_1217 -1.1 -2.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4808 -1.1 -1.6 23S rRNA m3psi1915 methyltransferase compare
PP_2217 -1.1 -1.6 enoyl-CoA hydratase compare
PP_0643 -1.1 -2.1 protein of unknown function compare
PP_4387 -1.1 -2.1 conserved exported protein of unknown function compare
PP_0420 -1.1 -2.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1734 -1.1 -2.4 Probable septum site-determining protein MinC compare
PP_5097 -1.1 -1.4 homoserine O-acetyltransferase compare
PP_0366 -1.1 -3.1 dethiobiotin synthetase compare
PP_4697 -1.1 -2.3 poly(A) polymerase compare
PP_5140 -1.0 -2.3 Transcriptional regulator, MerR family compare
PP_4333 -1.0 -2.5 CheW domain protein compare
PP_2681 -1.0 -1.3 coenzyme PQQ synthesis protein D compare
PP_2098 -1.0 -5.3 D-alanyl-D-alanine carboxypeptidase compare
PP_4860 -1.0 -5.9 putative Mannose-6-phosphate isomerase compare
PP_2337 -1.0 -1.5 aconitate isomerase compare
PP_4371 -1.0 -4.4 two component system AtoC DNA-binding transcriptional activator compare
PP_2327 -1.0 -0.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0484 -1.0 -3.4 transporter of an unknown substrate compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source L-Phenylalanine in Pseudomonas putida KT2440

For carbon source L-Phenylalanine across organisms