Experiment set47S251 for Pseudomonas putida KT2440

Compare to:

L-Phenylalanine 5 mM carbon source

200 most important genes:

  gene name fitness t score description  
PP_4364 -5.4 -3.7 putative Anti-sigma F factor antagonist compare
PP_3434 -5.3 -3.6 conserved protein of unknown function compare
PP_3433 -5.0 -8.3 4-hydroxyphenylpyruvate dioxygenase conserved
PP_4619 -4.9 -5.8 Maleylacetoacetate isomerase conserved
PP_4621 -4.6 -8.7 Homogentisate 1,2-dioxygenase conserved
PP_5104 -4.4 -6.0 thiazole synthase compare
PP_1381 -4.3 -2.2 4-carboxymuconolactone decarboxylase compare
PP_4620 -4.2 -6.9 Fumarylacetoacetase compare
PP_4922 -4.0 -10.1 Phosphomethylpyrimidine synthase compare
PP_3121 -3.8 -3.5 transcriptional regulator, LysR family compare
PP_4782 -3.7 -3.6 Phosphomethylpyrimidine kinase compare
PP_3590 -3.6 -6.9 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_3123 -3.6 -8.3 acetoacetyl CoA-transferase (subunit B) conserved
PP_0164 -3.6 -2.5 conserved protein of unknown function compare
PP_3952 -3.4 -8.6 3-oxoadipate CoA-transferase subunit A compare
PP_3484 -3.4 -5.6 Response regulator receiver protein compare
PP_3122 -3.1 -6.2 acetoacetyl CoA-transferase (subunit A) compare
PP_3951 -3.1 -5.5 3-oxoadipate CoA-transferase subunit A compare
PP_1348 -3.1 -4.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1231 -3.0 -2.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4356 -3.0 -3.3 Flagellar protein FliO compare
PP_0787 -3.0 -2.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1623 -3.0 -7.9 RNA polymerase, sigma S (sigma 38) factor compare
PP_1377 -2.8 -6.8 beta-ketoadipyl-CoA thiolase compare
PP_1233 -2.8 -3.3 sulfurtransferase compare
PP_4489 -2.8 -11.0 sigma-54 dependent transcriptional regulator conserved
PP_3946 -2.7 -1.9 HTH-type transcriptional repressor NicR compare
PP_5303 -2.6 -4.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4495 -2.6 -12.0 aromatic amino acid transport protein conserved
PP_1079 -2.6 -1.8 Ornithine carbamoyltransferase compare
PP_4004 -2.6 -4.6 DNA translocase FtsK compare
PP_3080 -2.6 -6.6 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4354 -2.6 -3.0 flagellar export apparatus subunit compare
PP_4940 -2.6 -6.8 Putative glycosyltransferase compare
PP_4943 -2.5 -1.7 putative Glycosyl transferase compare
PP_1198 -2.5 -2.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4699 -2.5 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5659 -2.4 -3.1 protein of unknown function compare
PP_3821 -2.3 -6.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3790 -2.3 -6.5 diaminopimelate epimerase compare
PP_1045 -2.3 -1.7 Type II secretion pathway protein XcpP compare
PP_4938 -2.2 -7.0 putative Glycosyl transferase compare
PP_4936 -2.1 -6.2 O-antigen polymerase compare
PP_1733 -2.1 -3.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_1734 -2.1 -3.1 Probable septum site-determining protein MinC compare
PP_0435 -2.1 -4.4 Peptidase, M23/M37 family compare
PP_1804 -2.0 -6.3 Glycosyl transferase WbpL compare
PP_1776 -2.0 -9.3 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4116 -2.0 -7.4 isocitrate lyase compare
PP_0345 -2.0 -3.2 putative Heptose kinase WapP compare
PP_0356 -1.9 -1.3 malate synthase G compare
PP_1415 -1.9 -2.9 putative membrane associated enzyme subunit compare
PP_5035 -1.9 -4.8 Histidine utilization repressor compare
PP_2390 -1.9 -7.4 Transcriptional regulator, LysR family compare
PP_4262 -1.9 -1.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0566 -1.9 -1.6 translation-related factor compare
PP_4917 -1.8 -3.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0914 -1.8 -8.0 GGDEF domain protein compare
PP_1799 -1.8 -9.1 GDP-mannose 4,6-dehydratase compare
PP_3527 -1.8 -7.8 Transcriptional regulator, TetR family compare
PP_0362 -1.8 -8.9 Biotin synthase compare
PP_4993 -1.8 -2.2 Glutathione synthetase compare
PP_4382 -1.8 -7.1 Peptidoglycan hydrolase FlgJ compare
PP_1800 -1.8 -7.1 Oxidoreductase Rmd compare
PP_1317 -1.8 -2.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0001 -1.8 -1.7 probable chromosome-partitioning protein compare
PP_4344 -1.8 -10.1 flagellar export pore protein compare
PP_1780 -1.8 -12.0 putative mannosyltransferase compare
PP_0440 -1.7 -2.6 Elongation factor Tu-A compare
PP_3555 -1.7 -4.9 putative Transmembrane sensor compare
PP_1304 -1.7 -4.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1779 -1.7 -4.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0346 -1.7 -6.0 putative Heptose kinase WapQ compare
PP_4389 -1.7 -5.5 Flagellar basal-body rod modification protein FlgD compare
PP_4378 -1.7 -11.3 flagellin, filament structural protein compare
PP_0888 -1.7 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_4383 -1.7 -4.2 Flagellar P-ring protein compare
PP_4381 -1.6 -8.4 Flagellar hook-associated protein FlgK compare
PP_1805 -1.6 -9.7 Polysaccharide biosynthesis protein compare
PP_1224 -1.6 -3.5 periplasmic subunit of the TolQRA transport system compare
PP_4391 -1.6 -6.5 flagellar basal-body rod protein FlgB compare
PP_1790 -1.6 -3.2 putative Acylneuraminate cytidylyltransferase compare
PP_2001 -1.6 -1.1 O-succinylhomoserine sulfhydrylase compare
PP_4352 -1.6 -8.3 flagellin export apparatus, substrate specificity protein compare
PP_4333 -1.6 -5.5 CheW domain protein compare
PP_4396 -1.6 -3.0 conserved protein of unknown function compare
PP_1802 -1.6 -8.7 glycosyl transferase compare
PP_4008 -1.6 -1.5 ATP-dependent serine protease compare
PP_4358 -1.5 -5.5 flagellar synthesis, switching and energizing component compare
PP_0978 -1.5 -2.1 conserved protein of unknown function compare
PP_1426 -1.5 -7.9 L-aspartate oxidase compare
PP_4696 -1.5 -1.4 Nitrogen regulation protein NR(I) compare
PP_4366 -1.5 -8.4 flagellum-specific ATP synthase compare
PP_4355 -1.5 -1.5 flagellar export apparatus subunit compare
PP_2302 -1.5 -3.1 DNA-binding, ATP-dependent protease compare
PP_0319 -1.5 -1.5 conserved protein of unknown function compare
PP_1553 -1.5 -2.6 conserved protein of unknown function compare
PP_4937 -1.5 -2.6 toluene tolerance protein compare
PP_5093 -1.5 -1.3 twitching motility protein compare
PP_0434 -1.5 -3.3 Anhydro-N-acetylmuramic acid kinase compare
PP_4388 -1.4 -8.9 Flagellar hook protein FlgE compare
PP_1367 -1.4 -5.0 formyltetrahydrofolate hydrolase compare
PP_2145 -1.4 -2.5 beta-N-acetylglucosaminidase compare
PP_4385 -1.4 -3.2 flagellar basal-body rod protein FlgG compare
PP_3052 -1.4 -1.6 conserved protein of unknown function compare
PP_4695 -1.4 -6.6 Sensory box histidine kinase compare
PP_4373 -1.4 -8.3 Transcriptional regulator FleQ compare
PP_1801 -1.4 -6.1 Glycosyl transferase WbpY compare
PP_1088 -1.4 -1.0 Argininosuccinate synthase compare
PP_5230 -1.4 -3.1 Tyrosine recombinase XerC compare
PP_0122 -1.4 -2.2 conserved exported protein of unknown function compare
PP_4386 -1.4 -3.7 flagellar basal-body rod protein FlgF compare
PP_1138 -1.4 -3.4 branched chain amino acid transporter - ATP binding subunit compare
PP_4375 -1.3 -4.0 flagellar chaperone, inhibits premature FliC assembly compare
PP_4369 -1.3 -6.9 Flagellar M-ring protein compare
PP_5313 -1.3 -1.8 DNA-binding protein HU-alpha compare
PP_0184 -1.3 -0.9 Argininosuccinate lyase compare
PP_1364 -1.3 -5.0 conserved exported protein of unknown function compare
PP_5202 -1.3 -2.1 putative cell division protein compare
PP_4384 -1.3 -6.2 Flagellar L-ring protein compare
PP_4365 -1.2 -4.0 Flagellar protein FliJ compare
PP_5097 -1.2 -0.8 homoserine O-acetyltransferase compare
PP_5001 -1.2 -2.5 protease HslVU, ATPase component compare
PP_4890 -1.2 -0.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_4368 -1.2 -4.8 flagellar motor switch protein compare
PP_4390 -1.2 -3.4 flagellar basal-body rod protein FlgC compare
PP_4367 -1.2 -2.8 Flagellar assembly protein FliH compare
PP_5017 -1.2 -1.2 Sec-independent protein translocase protein TatB compare
PP_0841 -1.2 -2.5 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4824 -1.2 -4.0 Sensor histidine kinase/response regulator compare
PP_0065 -1.2 -1.4 NAD-binding component of TrK potassium transporter compare
PP_5236 -1.2 -5.1 conserved protein of unknown function compare
PP_4341 -1.2 -6.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_5212 -1.2 -4.8 Oxidoreductase, iron-sulfur-binding compare
PP_3241 -1.2 -1.3 conserved exported protein of unknown function compare
PP_0834 -1.2 -1.9 Sec translocation complex subunit YajC compare
PP_0630 -1.2 -1.2 DNA gyrase inhibitor YacG compare
PP_4376 -1.2 -6.0 flagellar filament capping protein compare
PP_4380 -1.2 -7.0 Flagellar hook-associated protein FlgL compare
PP_4910 -1.1 -1.4 conserved protein of unknown function compare
PP_2510 -1.1 -1.4 conserved protein of unknown function compare
PP_4361 -1.1 -4.0 Flagellar hook-length control protein FliK compare
PP_0025 -1.1 -1.1 hypothetical protein compare
PP_4343 -1.1 -2.9 Flagellar biosynthesis protein FlhF compare
PP_4392 -1.1 -5.0 chemotaxis protein methyltransferase compare
PP_4340 -1.1 -2.5 response regulator for chemotactic signal transduction compare
PP_2327 -1.1 -0.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0417 -1.1 -1.6 Anthranilate synthase component 1 compare
PP_4213 -1.1 -2.1 putative dipeptidase compare
PP_2907 -1.1 -2.6 DNA-binding response regulator compare
PP_0406 -1.1 -1.8 Nucleotidyltransferase family protein compare
PP_0291 -1.1 -1.6 conserved protein of unknown function compare
PP_4942 -1.0 -1.7 conserved protein of unknown function compare
PP_4370 -1.0 -2.9 Flagellar hook-basal body complex protein FliE compare
PP_2433 -1.0 -0.7 conserved protein of unknown function compare
PP_1215 -1.0 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_0405 -1.0 -4.6 conserved protein of unknown function compare
PP_4480 -1.0 -3.8 arginine N-succinyltransferase, subunit alpha compare
PP_0422 -1.0 -0.7 Indole-3-glycerol phosphate synthase compare
PP_1355 -1.0 -4.8 Muropeptide permease AmpG compare
PP_3245 -1.0 -1.5 conserved protein of unknown function compare
PP_0735 -1.0 -0.7 molybdopterin-synthase adenylyltransferase compare
PP_1778 -1.0 -3.1 Lipopolysaccharide ABC export system, permease protein compare
PP_4394 -1.0 -3.6 flagella basal body P-ring formation protein compare
PP_4860 -1.0 -6.2 putative Mannose-6-phosphate isomerase compare
PP_5076 -1.0 -7.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_0022 -1.0 -1.0 hypothetical protein compare
PP_0084 -1.0 -3.6 HTH-type transcriptional regulator TrpI compare
PP_2396 -1.0 -2.8 conserved exported protein of unknown function compare
PP_4941 -1.0 -2.9 conserved exported protein of unknown function compare
PP_4994 -1.0 -0.9 conserved protein of unknown function compare
PP_0063 -1.0 -3.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1310 -1.0 -1.0 conserved hypothetical protein compare
PP_3926 -1.0 -1.3 short-chain dehydrogenase compare
PP_2388 -1.0 -1.9 Transporter, LysE family compare
PP_2309 -1.0 -1.2 conserved protein of unknown function compare
PP_2107 -1.0 -1.3 conserved protein of unknown function compare
PP_5248 -1.0 -1.3 putative hydrolase compare
PP_0439 -1.0 -2.9 conserved protein of unknown function compare
PP_2908 -1.0 -2.6 DNA-binding transcriptional repressor compare
PP_2868 -1.0 -4.0 Transcriptional regulator, Cro/CI family compare
PP_5289 -1.0 -0.6 Acetylglutamate kinase compare
PP_1556 -1.0 -1.8 conserved protein of unknown function compare
PP_0509 -1.0 -2.6 conserved protein of unknown function compare
PP_0962 -0.9 -1.6 toluene-tolerance protein compare
PP_4362 -0.9 -2.4 conserved protein of unknown function compare
PP_2098 -0.9 -5.3 D-alanyl-D-alanine carboxypeptidase compare
PP_4353 -0.9 -3.3 Flagellar biosynthetic protein fliR compare
PP_1716 -0.9 -1.7 Transcriptional regulator, Cro/CI family compare
PP_1763 -0.9 -1.4 putative oxidoreductase compare
PP_4338 -0.9 -4.0 Chemotaxis histidine kinase CheA compare
PP_5338 -0.9 -1.9 aspartate ammonia-lyase compare
PP_1217 -0.9 -2.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2903 -0.9 -1.6 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0880 -0.9 -2.0 dipeptide ABC transporter - putative membrane subunit compare
PP_4332 -0.9 -3.0 Chemotaxis protein CheW compare
PP_5090 -0.9 -1.7 putative cell division protein compare
PP_4223 -0.9 -1.6 diaminobutyrate-2-oxoglutarate transaminase compare
PP_0261 -0.9 -2.4 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4060 -0.9 -4.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source L-Phenylalanine in Pseudomonas putida KT2440

For carbon source L-Phenylalanine across organisms