Experiment set47S251 for Pseudomonas putida KT2440

Compare to:

L-Phenylalanine 5 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_5053 +1.5 9.1 Protein-export protein SecB compare
PP_1656 +1.5 11.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_4099 +1.5 12.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4171 +1.4 12.1 conserved exported protein of unknown function compare
PP_4999 +1.4 0.7 dihydroorotase-like protein compare
PP_1654 +1.4 1.4 cysteine synthase B compare
PP_1650 +1.4 14.0 Sensor protein GacS compare
PP_1655 +1.4 8.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1237 +1.4 1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1824 +1.4 3.6 Smr domain protein compare
PP_4799 +1.4 0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4265 +1.3 0.8 DNA-binding transcriptional dual regulator compare
PP_2000 +1.3 1.5 amidophosphoribosyl transferase compare
PP_5571 +1.2 2.5 conserved protein of unknown function compare
PP_4723 +1.2 0.8 Carbamoyl-phosphate synthase large chain compare
PP_2370 +1.2 1.5 conserved protein of unknown function compare
PP_0856 +1.2 0.7 conserved lipoprotein of unknown function compare
PP_4828 +1.1 1.5 Precorrin-8X methylmutase compare
PP_4724 +1.1 0.7 Carbamoyl-phosphate synthase small chain compare
PP_0293 +1.1 0.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0691 +1.1 0.7 Glutamate 5-kinase compare
PP_3999 +1.1 0.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0833 +1.1 0.7 queuine tRNA-ribosyltransferase compare
PP_0957 +1.1 1.0 D-arabinose 5-phosphate isomerase compare
PP_0593 +1.0 1.5 putative ribosome-binding factor compare
PP_4126 +1.0 0.6 NADH-quinone oxidoreductase subunit I compare
PP_1528 +1.0 1.7 conserved protein of unknown function compare
PP_5706 +1.0 1.8 Sec translocation complex - SecG subunit compare
PP_0250 +1.0 2.7 heat shock protein Hsp15 involved in ribosome recycling compare
PP_4406 +0.9 1.3 conserved protein of unknown function compare
PP_5014 +0.9 0.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_0246 +0.9 1.0 two-component system DNA-binding response transcriptional dual regulator compare
PP_4720 +0.9 1.7 putative RNA binding protein compare
PP_1353 +0.9 2.6 conserved membrane protein of unknown function compare
PP_2371 +0.9 0.6 Sulphite reductase hemoprotein, beta subunit compare
PP_0804 +0.9 6.1 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_2387 +0.8 2.1 conserved protein of unknown function compare
PP_1683 +0.8 1.2 Transcriptional regulator, MarR family compare
PP_1986 +0.8 0.5 3-isopropylmalate dehydratase small subunit compare
PP_2655 +0.8 2.4 conserved protein of unknown function compare
PP_1999 +0.8 1.7 membrane protein required for colicin V production compare
PP_4173 +0.8 5.4 Sensor histidine kinase/response regulator compare
PP_4871 +0.8 3.1 putative lysine decarboxylase family protein compare
PP_2725 +0.8 2.2 Protease PfpI compare
PP_0195 +0.8 2.2 conserved protein of unknown function compare
PP_1026 +0.8 1.7 Peptidase, M23/M37 family compare
PP_4251 +0.8 2.2 cytochrome c oxidase subunit, cbb3-type compare
PP_4449 +0.8 2.5 conserved protein of unknown function compare
PP_5295 +0.8 1.4 conserved protein of unknown function compare
PP_1096 +0.7 1.3 putative electron transport complex protein compare
PP_1679 +0.7 1.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5279 +0.7 2.1 conserved protein of unknown function compare
PP_1605 +0.7 1.3 Ribonuclease HII compare
PP_1352 +0.7 2.9 UPF0234 protein PP_1352 compare
PP_3034 +0.7 2.3 putative Regulator protein compare
PP_3938 +0.7 1.1 conserved protein of unknown function compare
PP_1829 +0.7 2.0 Hydrolase, alpha/beta fold family compare
PP_4273 +0.7 1.1 Transcriptional regulator, MerR family compare
PP_4957 +0.7 2.3 conserved protein of unknown function compare
PP_0806 +0.7 6.6 putative Surface adhesion protein compare
PP_4669 +0.7 1.9 OmpA family protein compare
PP_0803 +0.7 4.4 Protein secretion ABC efflux system, membrane fusion protein compare
PP_1328 +0.7 1.7 Protein MraZ compare
PP_2716 +0.7 1.1 arsenate reductase compare
PP_2889 +0.7 4.0 putative Transmembrane regulator PrtR compare
PP_4693 +0.7 1.1 RNA polymerase-binding transcription factor DksA compare
PP_0770 +0.7 2.6 PemI-like protein compare
PP_4560 +0.7 1.6 putative Ribonuclease BN compare
PP_0989 +0.7 1.8 glycine cleavage system H protein 1 compare
PP_2337 +0.7 1.4 aconitate isomerase compare
PP_0377 +0.7 1.2 coenzyme PQQ synthesis protein D compare
PP_2898 +0.7 1.1 conserved exported protein of unknown function compare
PP_0384 +0.7 3.9 Transcriptional regulator, AsnC family compare
PP_2446 +0.7 2.3 conserved exported protein of unknown function compare
PP_4470 +0.6 2.5 putative transcriptional regulator (Arc domain-containing) compare
PP_4817 +0.6 2.4 MaoC domain protein compare
PP_0805 +0.6 4.5 Outer membrane efflux protein compare
PP_1396 +0.6 1.8 conserved protein of unknown function compare
PP_4787 +0.6 1.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1147 +0.6 2.0 conserved protein of unknown function compare
PP_2159 +0.6 1.4 Copper-binding protein, plastocyanin/azurin family compare
PP_4238 +0.6 0.9 conserved protein of unknown function compare
PP_2194 +0.6 2.5 Transcriptional regulator, LysR family compare
PP_5541 +0.6 2.0 conserved protein of unknown function compare
PP_2633 +0.6 1.3 conserved protein of unknown function compare
PP_5107 +0.6 2.5 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_4752 +0.6 2.8 putative Xaa-Pro aminopeptidase compare
PP_5499 +0.6 2.1 conserved protein of unknown function compare
PP_3903 +0.6 1.2 conserved protein of unknown function compare
PP_2231 +0.6 1.9 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_3762 +0.6 1.8 Response regulator compare
PP_5582 +0.6 1.2 conserved protein of unknown function compare
PP_3831 +0.6 3.6 conserved protein of unknown function compare
PP_0824 +0.6 2.8 phosphonate transport system-binding protein compare
PP_2847 +0.6 1.2 Urease accessory protein UreJ compare
PP_0232 +0.6 0.9 ATP-binding taurine transporter subunit compare
PP_1193 +0.6 2.5 conserved membrane protein of unknown function compare
PP_5687 +0.6 2.5 putative permease of the major facilitator superfamily compare
PP_3679 +0.6 2.7 conserved protein of unknown function compare
PP_1938 +0.6 1.1 conserved protein of unknown function compare
PP_4700 +0.6 0.4 pantothenate synthetase compare
PP_5583 +0.6 1.2 conserved protein of unknown function compare
PP_1730 +0.6 2.7 Probable M18 family aminopeptidase 2 compare
PP_0801 +0.5 0.9 conserved exported protein of unknown function compare
PP_5359 +0.5 1.5 CobW/P47K family protein compare
PP_1478 +0.5 2.8 putative Xenobiotic reductase compare
PP_2550 +0.5 1.2 putative transcriptional regulatory protein compare
PP_1207 +0.5 2.1 conserved protein of unknown function compare
PP_0941 +0.5 2.0 putative ribosome associated protein compare
PP_4541 +0.5 1.3 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_0784 +0.5 2.0 conserved protein of unknown function compare
PP_4413 +0.5 2.3 conserved protein of unknown function compare
PP_5735 +0.5 1.9 conserved hypothetical protein compare
PP_2404 +0.5 2.2 conserved exported protein of unknown function compare
PP_1548 +0.5 1.7 conserved protein of unknown function compare
PP_3164 +0.5 1.3 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_3531 +0.5 1.2 conserved exported protein of unknown function compare
PP_2747 +0.5 0.8 conserved protein of unknown function compare
PP_1744 +0.5 1.5 conserved exported protein of unknown function compare
PP_1066 +0.5 1.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0166 +0.5 3.9 HlyD family secretion protein compare
PP_2220 +0.5 1.9 C4-type zinc finger protein, DksA/TraR family compare
PP_0165 +0.5 3.9 GGDEF domain protein compare
PP_5680 +0.5 2.3 putative Cro/CI family transcriptional regulator compare
PP_4902 +0.5 0.5 Oligoribonuclease compare
PP_0547 +0.5 1.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_t11 +0.5 1.0 tRNA-Lys compare
PP_5604 +0.5 1.1 putative subtilisin-like serine protease compare
PP_5748 +0.5 0.8 cytochrome c heme lyase subunit compare
PP_2226 +0.5 2.0 putative K(+)/H(+) antiporter subunit F compare
PP_3967 +0.5 2.1 MutT/nudix family protein compare
PP_4488 +0.5 1.5 conserved exported protein of unknown function compare
PP_0044 +0.5 2.6 cobalt-zinc-cadmium resistance protein compare
PP_4657 +0.5 2.1 zinc metalloprotease compare
PP_3328 +0.5 1.5 putative Ring-cleaving dioxygenase compare
PP_3294 +0.5 1.8 Universal stress protein family compare
PP_1454 +0.5 1.4 conserved protein of unknown function compare
PP_3000 +0.5 1.2 MaoC domain protein compare
PP_3850 +0.5 1.6 conserved protein of unknown function compare
PP_0094 +0.5 2.2 5'-nucleotidase compare
PP_5383 +0.5 2.2 transcriptional activator protein compare
PP_4246 +0.5 3.0 Periplasmic binding protein compare
PP_0512 +0.5 1.5 hypothetical protein compare
PP_2643 +0.5 1.4 aromatic acid chemoreceptor compare
PP_3504 +0.5 2.1 conserved protein of unknown function compare
PP_3522 +0.5 1.0 conserved protein of unknown function compare
PP_0294 +0.5 2.0 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) compare
PP_1238 +0.5 2.0 putative Lipoprotein compare
PP_5670 +0.5 2.0 conserved protein of unknown function compare
PP_3404 +0.5 2.2 conserved protein of unknown function compare
PP_1979 +0.5 0.8 putative Hydrolase compare
PP_4640 +0.5 2.0 conserved protein of unknown function compare
PP_3524 +0.5 1.2 conserved protein of unknown function compare
PP_3257 +0.5 3.0 putative Methyltransferase compare
PP_4139 +0.5 1.4 conserved protein of unknown function compare
PP_3243 +0.5 1.4 Acetyltransferase, GNAT family compare
PP_0299 +0.5 2.0 conserved protein of unknown function compare
PP_0301 +0.5 1.6 betainyl-CoA thiolase compare
PP_1967 +0.5 2.0 tRNA D-aminoacylase compare
PP_5624 +0.5 1.8 conserved protein of unknown function compare
PP_5176 +0.5 1.3 conserved protein of unknown function compare
PP_2121 +0.4 0.8 putative Lipoprotein compare
PP_1160 +0.4 2.5 Asparaginase family protein compare
PP_2640 +0.4 1.3 Acetyltransferase, GNAT family compare
PP_0168 +0.4 3.9 putative surface adhesion protein compare
PP_1048 +0.4 0.7 putative protein secretion protein for export compare
PP_2547 +0.4 1.5 Transcriptional regulator, LysR family compare
PP_5139 +0.4 1.4 cadmium translocating P-type ATPase compare
PP_5473 +0.4 0.5 putative transcriptional regulator, LuxR family compare
PP_4301 +0.4 1.4 Pyruvate kinase compare
PP_4797 +0.4 0.5 conserved protein of unknown function compare
PP_0126 +0.4 1.1 Cytochrome c4 compare
PP_2013 +0.4 1.4 conserved protein of unknown function compare
PP_1001 +0.4 0.9 arginine deiminase compare
PP_3414 +0.4 2.4 Methyl-accepting chemotaxis transducer/sensory box protein compare
PP_0127 +0.4 1.3 Thiol:disulfide interchange protein compare
PP_0929 +0.4 1.6 putative Lipoprotein compare
PP_5449 +0.4 1.7 conserved exported protein of unknown function compare
PP_4921 +0.4 2.1 Transporter, NCS1 nucleoside transporter family compare
PP_2717 +0.4 2.1 arsenite/antimonite transporter compare
PP_1167 +0.4 1.7 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) compare
PP_2616 +0.4 1.0 conserved protein of unknown function compare
PP_1261 +0.4 1.5 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_4916 +0.4 1.4 putative esterase compare
PP_2153 +0.4 0.9 conserved protein of unknown function compare
PP_3798 +0.4 2.0 conserved protein of unknown function compare
PP_5252 +0.4 2.7 conserved exported protein of unknown function compare
PP_2124 +0.4 1.4 putative Glycosyl transferase compare
PP_0959 +0.4 0.8 phospholipid ABC transporter compare
PP_3618 +0.4 1.8 conserved protein of unknown function compare
PP_1534 +0.4 1.4 conserved protein of unknown function compare
PP_0378 +0.4 2.0 Pyrroloquinoline-quinone synthase compare
PP_5640 +0.4 1.2 conserved protein of unknown function compare
PP_1113 +0.4 3.2 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1812 +0.4 0.4 conserved protein of unknown function compare
PP_3341 +0.4 1.8 nickel-responsive regulator compare
PP_3637 +0.4 0.8 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4258 +0.4 1.4 cytochrome c oxidase subunit, cbb3-type compare
PP_1481 +0.4 2.2 medium chain aldehyde dehydrogenase compare
PP_1362 +0.4 1.3 pyruvate kinase II compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source L-Phenylalanine in Pseudomonas putida KT2440

For carbon source L-Phenylalanine across organisms