Experiment set47S246 for Pseudomonas putida KT2440

Compare to:

L-tyrosine disodium salt 5 mM carbon source

200 most important genes:

  gene name fitness t score description  
PP_1418 -3.9 -2.7 putative Tricarboxylate transport protein TctC compare
PP_1420 -3.9 -4.6 Transcriptional regulatory protein tctD compare
PP_1872 -3.8 -7.2 glutamate-pyruvate aminotransferase compare
PP_5104 -3.7 -7.1 thiazole synthase compare
PP_4922 -3.7 -10.2 Phosphomethylpyrimidine synthase compare
PP_4782 -3.5 -4.1 Phosphomethylpyrimidine kinase compare
PP_3790 -3.2 -7.1 diaminopimelate epimerase compare
PP_5303 -3.2 -3.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1366 -3.2 -2.2 Transcriptional regulator MvaT, P16 subunit compare
PP_0540 -3.1 -7.4 conserved inner membrane protein conserved
PP_1421 -2.8 -7.0 putative Sensor histidine kinase TctE compare
PP_1231 -2.8 -2.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0735 -2.8 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_1079 -2.6 -1.8 Ornithine carbamoyltransferase compare
PP_1733 -2.6 -3.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_0435 -2.2 -4.2 Peptidase, M23/M37 family compare
PP_1233 -2.1 -3.5 sulfurtransferase compare
PP_2107 -2.1 -2.5 conserved protein of unknown function compare
PP_0787 -2.1 -2.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1348 -2.1 -5.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1224 -2.1 -3.9 periplasmic subunit of the TolQRA transport system compare
PP_4937 -2.0 -2.4 toluene tolerance protein compare
PP_4828 -2.0 -1.4 Precorrin-8X methylmutase compare
PP_0001 -2.0 -1.9 probable chromosome-partitioning protein compare
PP_1142 -2.0 -1.9 conserved protein of unknown function compare
PP_3903 -2.0 -1.9 conserved protein of unknown function compare
PP_4517 -2.0 -2.7 conserved protein of unknown function compare
PP_3590 -2.0 -6.2 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2088 -1.9 -3.3 RNA polymerase sigma factor SigX compare
PP_4060 -1.9 -7.5 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_5075 -1.9 -9.6 glutamate synthase (NADPH) beta subunit compare
PP_4695 -1.7 -7.8 Sensory box histidine kinase compare
PP_4254 -1.7 -2.2 conserved protein of unknown function compare
PP_0063 -1.6 -4.5 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5313 -1.6 -2.4 DNA-binding protein HU-alpha compare
PP_2341 -1.6 -2.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0852 -1.6 -4.5 Transcriptional regulator, Cro/CI family compare
PP_4917 -1.5 -3.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5076 -1.5 -11.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_0346 -1.5 -5.6 putative Heptose kinase WapQ compare
PP_0185 -1.5 -6.7 Positive alginate biosynthesis regulatory protein compare
PP_0261 -1.4 -3.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5SB -1.4 -2.7 5S ribosomal RNA compare
PP_4008 -1.4 -1.6 ATP-dependent serine protease compare
PP_3505 -1.4 -2.0 conserved protein of unknown function compare
PP_1088 -1.4 -0.9 Argininosuccinate synthase compare
PP_0246 -1.4 -1.2 two-component system DNA-binding response transcriptional dual regulator compare
PP_2001 -1.3 -1.3 O-succinylhomoserine sulfhydrylase compare
PP_4696 -1.3 -1.3 Nitrogen regulation protein NR(I) compare
PP_3946 -1.3 -1.4 HTH-type transcriptional repressor NicR compare
PP_1217 -1.3 -2.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1898 -1.3 -0.9 MotA/TolQ/ExbB proton channel family protein compare
PP_3098 -1.3 -1.7 conserved protein of unknown function compare
PP_4143 -1.3 -2.3 conserved protein of unknown function compare
PP_4803 -1.3 -4.1 D-alanyl-D-alanine carboxypeptidase compare
PP_1416 -1.2 -5.4 putative Tricarboxylate transport protein TctA compare
PP_1417 -1.2 -3.4 putative Tricarboxylate transport protein TctB compare
PP_1268 -1.2 -2.1 putative HtrA suppressor protein sohA compare
PP_0345 -1.2 -2.7 putative Heptose kinase WapP compare
PP_4943 -1.2 -1.4 putative Glycosyl transferase compare
PP_3508 -1.2 -2.7 Protein CobW compare
PP_0406 -1.2 -1.9 Nucleotidyltransferase family protein compare
PP_4247 -1.2 -1.3 Exonuclease compare
PP_5035 -1.2 -4.0 Histidine utilization repressor compare
PP_4004 -1.1 -3.2 DNA translocase FtsK compare
PP_1364 -1.1 -4.9 conserved exported protein of unknown function compare
PP_2720 -1.1 -1.6 conserved protein of unknown function compare
PP_2098 -1.1 -6.6 D-alanyl-D-alanine carboxypeptidase compare
PP_5097 -1.1 -1.1 homoserine O-acetyltransferase compare
PP_5701 -1.1 -1.8 conserved protein of unknown function compare
PP_0184 -1.1 -1.0 Argininosuccinate lyase compare
PP_4890 -1.1 -0.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_1198 -1.1 -1.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3048 -1.0 -2.3 conserved protein of unknown function compare
PP_1426 -1.0 -6.3 L-aspartate oxidase compare
PP_0087 -1.0 -1.6 conserved exported protein of unknown function compare
PP_3378 -1.0 -2.0 putative 2-ketogluconokinase compare
PP_4957 -1.0 -2.7 conserved protein of unknown function compare
PP_0420 -1.0 -2.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1826 -1.0 -2.0 Hydrolase, isochorismatase family compare
PP_1025 -1.0 -2.8 2-isopropylmalate synthase compare
PP_3880 -1.0 -1.5 conserved exported protein of unknown function compare
PP_0507 -1.0 -3.6 putative ABC efflux transporter, ATP-binding protein compare
PP_0339 -1.0 -0.7 Pyruvate dehydrogenase E1 component compare
PP_1678 -1.0 -2.0 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0685 -1.0 -2.2 conserved protein of unknown function compare
PP_0422 -1.0 -0.7 Indole-3-glycerol phosphate synthase compare
PP_4738 -1.0 -1.7 conserved exported protein of unknown function compare
PP_4989 -1.0 -2.3 Protein PilJ compare
PP_0332 -0.9 -2.0 putative Acyltransferase compare
PP_2575 -0.9 -1.7 conserved exported protein of unknown function compare
PP_4223 -0.9 -2.1 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1045 -0.9 -1.6 Type II secretion pathway protein XcpP compare
PP_1736 -0.9 -2.0 conserved protein of unknown function compare
PP_4197 -0.9 -5.8 Transcriptional regulator, GntR family compare
PP_4971 -0.9 -4.9 putative Outer membrane-bound lytic murein transglycolase A compare
PP_1979 -0.9 -2.0 putative Hydrolase compare
PP_1568 -0.9 -1.3 conserved protein of unknown function compare
PP_3892 -0.9 -1.4 conserved protein of unknown function compare
PP_2526 -0.9 -1.8 conserved membrane protein of unknown function compare
PP_1026 -0.9 -1.9 Peptidase, M23/M37 family compare
PP_2820 -0.8 -1.4 HTH-type transcriptional regulator nfxB compare
PP_0506 -0.8 -5.7 putative ABC efflux transporter, permease protein compare
PP_4268 -0.8 -1.0 nucleoid-associated broad specificity regulator compare
PP_1734 -0.8 -2.1 Probable septum site-determining protein MinC compare
PP_0978 -0.8 -2.1 conserved protein of unknown function compare
PP_5247 -0.8 -2.8 conserved protein of unknown function compare
PP_4824 -0.8 -3.0 Sensor histidine kinase/response regulator compare
PP_3121 -0.8 -2.2 transcriptional regulator, LysR family compare
PP_3906 -0.8 -2.2 conserved protein of unknown function compare
PP_2090 -0.8 -2.4 Uroporphyrinogen-III C-methyltransferase compare
PP_1419 -0.8 -2.6 tricarboxylate-specific outer membrane porin compare
PP_0198 -0.8 -2.8 putative transporter compare
PP_1502 -0.8 -2.9 OmpA family protein compare
PP_0254 -0.8 -1.9 conserved protein of unknown function compare
PP_4997 -0.8 -1.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0951 -0.8 -4.4 Ribosome hibernation promoting factor compare
PP_1218 -0.8 -2.0 putative acyl-CoA thioesterase compare
PP_1328 -0.8 -1.3 Protein MraZ compare
PP_1677 -0.8 -2.3 Adenosyl-cobyric acid synthase compare
PP_2416 -0.8 -1.9 putative Iron ABC transporter, ATP-binding protein compare
PP_2765 -0.8 -1.1 putative Sulfonate monooxygenase MsuD compare
PP_4561 -0.8 -0.8 stress response protein compare
PP_5202 -0.8 -1.9 putative cell division protein compare
PP_1623 -0.8 -3.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_4679 -0.7 -0.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5448 -0.7 -2.3 conserved protein of unknown function compare
PP_5556 -0.7 -2.3 putative bacteriophage lysis protein compare
PP_1055 -0.7 -1.0 Type II secretion pathway protein GspN compare
PP_3117 -0.7 -1.8 putative protein involved in error-prone processing of DNA lesions compare
PP_5505 -0.7 -1.8 conserved transmembrane protein of unknown function compare
PP_5486 -0.7 -1.0 conserved protein of unknown function compare
PP_0508 -0.7 -1.8 conserved exported protein of unknown function compare
PP_0195 -0.7 -1.7 conserved protein of unknown function compare
PP_2320 -0.7 -4.6 conserved exported protein of unknown function compare
PP_2718 -0.7 -1.4 arsenic resistance transcriptional regulator compare
PP_2928 -0.7 -3.8 Saccharopine dehydrogenase compare
PP_1415 -0.7 -2.1 putative membrane associated enzyme subunit compare
PP_4826 -0.7 -2.6 Precorrin-3B C17-methyltransferase compare
PP_3891 -0.7 -1.5 conserved protein of unknown function compare
PP_5519 -0.7 -2.0 conserved protein of unknown function of phage origin compare
PP_4532 -0.7 -1.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1346 -0.7 -2.5 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_5289 -0.7 -0.6 Acetylglutamate kinase compare
PP_3792 -0.7 -2.1 conserved protein of unknown function compare
PP_3205 -0.7 -2.2 Fumarylacetoacetate hydrolase family protein compare
PP_0948 -0.7 -1.2 Phosphocarrier protein HPr compare
PP_0967 -0.7 -0.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1770 -0.7 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1216 -0.7 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5473 -0.7 -1.3 putative transcriptional regulator, LuxR family compare
PP_3898 -0.7 -2.4 conserved protein of unknown function compare
PP_3555 -0.7 -2.3 putative Transmembrane sensor compare
PP_1871 -0.7 -2.5 Protease HtpX compare
PP_4829 -0.7 -1.4 putative precorrin-3B synthase compare
PP_2658 -0.7 -2.3 phosphate ABC transporter compare
PP_4481 -0.7 -2.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_2348 -0.7 -1.9 Sensor histidine kinase compare
PP_0995 -0.7 -2.7 conserved membrane protein of unknown function compare
PP_1912 -0.7 -1.4 Phosphate acyltransferase compare
PP_3052 -0.6 -1.0 conserved protein of unknown function compare
PP_4819 -0.6 -2.7 conserved protein of unknown function compare
PP_5491 -0.6 -1.7 conserved protein of unknown function with SEC-C motif domain compare
PP_0965 -0.6 -0.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2324 -0.6 -2.0 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_3392 -0.6 -1.2 conserved protein of unknown function compare
PP_4540 -0.6 -2.8 Hydrolase, alpha/beta fold family compare
PP_1778 -0.6 -2.6 Lipopolysaccharide ABC export system, permease protein compare
PP_5231 -0.6 -2.5 putative (S)-2-haloacid dehalogenase compare
PP_5145 -0.6 -5.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5278 -0.6 -2.7 4-guanidinobutyraldehyde dehydrogenase compare
PP_5230 -0.6 -1.8 Tyrosine recombinase XerC compare
PP_4069 -0.6 -1.8 conserved protein of unknown function compare
PP_5146 -0.6 -3.1 RNA pyrophosphohydrolase compare
PP_1442 -0.6 -1.7 conserved protein of unknown function compare
PP_5211 -0.6 -2.5 ChaC-related protein compare
PP_4316 -0.6 -2.4 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_3239 -0.6 -1.4 putative cointegrate resolution protein T Tn4652 compare
PP_2714 -0.6 -2.9 Sensor histidine kinase compare
PP_5640 -0.6 -1.6 conserved protein of unknown function compare
PP_4605 -0.6 -3.5 Transcriptional regulator, AraC family compare
PP_1864 -0.6 -1.7 conserved protein of unknown function compare
PP_5185 -0.6 -0.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4681 -0.6 -1.2 conserved protein of unknown function compare
PP_1131 -0.6 -1.7 outer membrane lipoprotein compare
PP_2907 -0.6 -1.7 DNA-binding response regulator compare
PP_4531 -0.6 -1.8 conserved exported protein of unknown function compare
PP_4938 -0.6 -3.1 putative Glycosyl transferase compare
PP_2327 -0.6 -0.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1763 -0.6 -1.4 putative oxidoreductase compare
PP_0910 -0.6 -2.4 conserved exported protein of unknown function compare
PP_3527 -0.6 -3.5 Transcriptional regulator, TetR family compare
PP_4942 -0.6 -1.1 conserved protein of unknown function compare
PP_2028 -0.6 -2.3 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_3324 -0.6 -2.5 GTP cyclohydrolase I compare
PP_5023 -0.6 -2.9 Amino acid ABC transporter, permease protein compare
PP_3789 -0.6 -3.0 putative Efflux transporter compare
PP_1575 -0.6 -1.2 conserved protein of unknown function compare
PP_0116 -0.6 -2.4 putative lipoprotein compare
PP_4994 -0.6 -0.5 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-tyrosine disodium salt in Pseudomonas putida KT2440

For carbon source L-tyrosine disodium salt across organisms