Experiment set47S244 for Pseudomonas putida KT2440

Compare to:

L-tyrosine disodium salt 5 mM carbon source

200 most important genes:

  gene name fitness t score description  
PP_4782 -4.1 -2.8 Phosphomethylpyrimidine kinase compare
PP_1421 -3.9 -5.4 putative Sensor histidine kinase TctE compare
PP_0540 -3.9 -6.5 conserved inner membrane protein conserved
PP_1872 -3.5 -7.2 glutamate-pyruvate aminotransferase compare
PP_5104 -3.5 -7.1 thiazole synthase compare
PP_4922 -3.4 -10.2 Phosphomethylpyrimidine synthase compare
PP_1418 -3.3 -4.5 putative Tricarboxylate transport protein TctC compare
PP_1420 -3.2 -5.3 Transcriptional regulatory protein tctD compare
PP_0852 -2.9 -4.6 Transcriptional regulator, Cro/CI family compare
PP_5303 -2.9 -3.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0735 -2.8 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_1348 -2.7 -5.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3590 -2.7 -6.7 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1233 -2.7 -3.2 sulfurtransferase compare
PP_1079 -2.5 -1.7 Ornithine carbamoyltransferase compare
PP_1231 -2.3 -2.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1417 -2.3 -4.7 putative Tricarboxylate transport protein TctB compare
PP_0345 -2.3 -3.5 putative Heptose kinase WapP compare
PP_1416 -2.3 -7.9 putative Tricarboxylate transport protein TctA compare
PP_1224 -2.2 -3.7 periplasmic subunit of the TolQRA transport system compare
PP_0063 -2.2 -4.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0435 -2.2 -4.3 Peptidase, M23/M37 family compare
PP_0508 -2.1 -3.7 conserved exported protein of unknown function compare
PP_1826 -2.0 -2.2 Hydrolase, isochorismatase family compare
PP_5035 -2.0 -5.0 Histidine utilization repressor compare
PP_3790 -1.9 -6.1 diaminopimelate epimerase compare
PP_1734 -1.9 -2.6 Probable septum site-determining protein MinC compare
PP_0406 -1.9 -2.6 Nucleotidyltransferase family protein compare
PP_4004 -1.9 -4.1 DNA translocase FtsK compare
PP_3105 -1.9 -2.7 conserved membrane protein of unknown function compare
PP_1142 -1.8 -1.7 conserved protein of unknown function compare
PP_4060 -1.8 -7.1 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1216 -1.7 -2.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4143 -1.7 -3.3 conserved protein of unknown function compare
PP_4695 -1.7 -7.2 Sensory box histidine kinase compare
PP_4528 -1.7 -2.5 conserved protein of unknown function compare
PP_0126 -1.6 -2.6 Cytochrome c4 compare
PP_4937 -1.6 -2.4 toluene tolerance protein compare
PP_5076 -1.6 -11.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_0653 -1.6 -1.9 conserved protein of unknown function compare
PP_0346 -1.6 -5.9 putative Heptose kinase WapQ compare
PP_4699 -1.6 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5604 -1.6 -1.7 putative subtilisin-like serine protease compare
PP_1733 -1.5 -3.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_5075 -1.5 -8.4 glutamate synthase (NADPH) beta subunit compare
PP_3318 -1.5 -2.4 conserved protein of unknown function compare
PP_0787 -1.5 -1.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4696 -1.4 -1.0 Nitrogen regulation protein NR(I) compare
PP_1217 -1.4 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3637 -1.4 -1.7 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4008 -1.4 -1.3 ATP-dependent serine protease compare
PP_1214 -1.4 -1.8 putative transcriptional regulatory protein compare
PP_0236 -1.3 -2.3 NAD(P)H-dependent FMN reductase subunit compare
PP_2794 -1.3 -1.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2001 -1.3 -0.9 O-succinylhomoserine sulfhydrylase compare
PP_2820 -1.3 -2.2 HTH-type transcriptional regulator nfxB compare
PP_3447 -1.3 -1.5 conserved membrane protein of unknown function compare
PP_5198 -1.3 -2.1 conserved protein of unknown function compare
PP_2088 -1.3 -2.5 RNA polymerase sigma factor SigX compare
PP_1364 -1.3 -4.8 conserved exported protein of unknown function compare
PP_4942 -1.3 -1.9 conserved protein of unknown function compare
PP_3527 -1.2 -6.8 Transcriptional regulator, TetR family compare
PP_1898 -1.2 -0.8 MotA/TolQ/ExbB proton channel family protein compare
PP_2403 -1.2 -1.4 Chemotaxis protein CheY compare
PP_0184 -1.2 -0.8 Argininosuccinate lyase compare
PP_2668 -1.2 -2.2 ABC efflux transporter, ATP-binding protein compare
PP_1468 -1.2 -1.9 Tyrosine recombinase XerD compare
PP_4009 -1.2 -3.0 ATP-dependent Clp protease adapter protein ClpS compare
PP_1366 -1.1 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_1088 -1.1 -1.1 Argininosuccinate synthase compare
PP_1426 -1.1 -5.9 L-aspartate oxidase compare
PP_0261 -1.1 -3.1 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1419 -1.1 -3.3 tricarboxylate-specific outer membrane porin compare
PP_4481 -1.1 -3.7 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_4379 -1.1 -2.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4505 -1.1 -4.1 Sensor histidine kinase compare
PP_4989 -1.1 -2.4 Protein PilJ compare
PP_4122 -1.1 -0.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4890 -1.1 -0.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_2098 -1.1 -5.1 D-alanyl-D-alanine carboxypeptidase compare
PP_1871 -1.0 -3.4 Protease HtpX compare
PP_4917 -1.0 -2.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1836 -1.0 -2.6 putative metal transporter, ZIP family compare
PP_4213 -1.0 -1.8 putative dipeptidase compare
PP_0185 -1.0 -4.3 Positive alginate biosynthesis regulatory protein compare
PP_5202 -1.0 -1.5 putative cell division protein compare
PP_3333 -1.0 -2.7 conserved protein of unknown function compare
PP_2322 -1.0 -2.5 Major outer membrane lipoprotein compare
PP_0377 -1.0 -1.3 coenzyme PQQ synthesis protein D compare
PP_0065 -1.0 -1.3 NAD-binding component of TrK potassium transporter compare
PP_5552 -1.0 -1.8 conserved protein of unknown function compare
PP_1025 -1.0 -2.7 2-isopropylmalate synthase compare
PP_4971 -1.0 -4.7 putative Outer membrane-bound lytic murein transglycolase A compare
PP_0153 -1.0 -1.9 hypothetical protein compare
PP_3228 -0.9 -3.3 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_3603 -0.9 -2.9 Transcriptional regulator, GntR family compare
PP_0048 -0.9 -1.2 conserved protein of unknown function compare
PP_1097 -0.9 -1.1 Methionine--tRNA ligase compare
PP_5097 -0.9 -1.4 homoserine O-acetyltransferase compare
PP_2118 -0.9 -1.3 conserved protein of unknown function compare
PP_0440 -0.9 -1.6 Elongation factor Tu-A compare
PP_0422 -0.9 -0.6 Indole-3-glycerol phosphate synthase compare
PP_3903 -0.9 -1.2 conserved protein of unknown function compare
PP_3121 -0.9 -2.6 transcriptional regulator, LysR family compare
PP_4011 -0.9 -6.5 isocitrate dehydrogenase, NADP(+)-specific compare
PP_3245 -0.9 -1.4 conserved protein of unknown function compare
PP_4803 -0.9 -3.3 D-alanyl-D-alanine carboxypeptidase compare
PP_4811 -0.9 -2.5 Gamma-glutamyl phosphate reductase compare
PP_2416 -0.9 -2.0 putative Iron ABC transporter, ATP-binding protein compare
PP_2520 -0.9 -2.3 conserved protein of unknown function compare
PP_4897 -0.9 -2.4 N-acetylmuramoyl-L-alanine amidase compare
PP_4387 -0.9 -1.3 conserved exported protein of unknown function compare
PP_0758 -0.9 -3.1 conserved protein of unknown function compare
PP_3555 -0.9 -3.3 putative Transmembrane sensor compare
PP_2883 -0.9 -1.6 conserved protein of unknown function compare
PP_3892 -0.9 -1.3 conserved protein of unknown function compare
PP_0874 -0.9 -1.6 conserved protein of unknown function compare
PP_0507 -0.9 -3.3 putative ABC efflux transporter, ATP-binding protein compare
PP_3800 -0.9 -2.8 conserved protein of unknown function compare
PP_5145 -0.9 -7.0 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0339 -0.9 -0.8 Pyruvate dehydrogenase E1 component compare
PP_4941 -0.9 -2.5 conserved exported protein of unknown function compare
PP_5077 -0.8 -3.7 conserved protein of unknown function compare
PP_4798 -0.8 -3.7 putative Membrane-bound lytic murein transglycosylase compare
PP_4362 -0.8 -2.3 conserved protein of unknown function compare
PP_3055 -0.8 -1.8 Pyocin R2_PP, tail formation protein compare
PP_0995 -0.8 -3.1 conserved membrane protein of unknown function compare
PP_5289 -0.8 -0.6 Acetylglutamate kinase compare
PP_2737 -0.8 -1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5748 -0.8 -0.9 cytochrome c heme lyase subunit compare
PP_2868 -0.8 -3.4 Transcriptional regulator, Cro/CI family compare
PP_2327 -0.8 -0.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1215 -0.8 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_3408 -0.8 -2.3 cobalt transporter subunit A compare
PP_1906 -0.8 -2.3 ribosomal large subunit pseudouridine synthase C compare
PP_0957 -0.8 -1.0 D-arabinose 5-phosphate isomerase compare
PP_5090 -0.8 -1.5 putative cell division protein compare
PP_4778 -0.8 -2.6 23S rRNA pseudouridine 2457 synthase compare
PP_5448 -0.8 -2.4 conserved protein of unknown function compare
PP_4197 -0.8 -4.3 Transcriptional regulator, GntR family compare
PP_0880 -0.8 -2.3 dipeptide ABC transporter - putative membrane subunit compare
PP_3539 -0.8 -1.4 putative Transcriptional regulator compare
PP_2433 -0.8 -0.5 conserved protein of unknown function compare
PP_0948 -0.8 -1.3 Phosphocarrier protein HPr compare
PP_5240 -0.8 -1.9 Response regulator compare
PP_3455 -0.8 -2.8 Multidrug efflux RND membrane fusion protein compare
PP_4383 -0.8 -2.6 Flagellar P-ring protein compare
PP_4038 -0.8 -2.8 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_4605 -0.8 -4.1 Transcriptional regulator, AraC family compare
PP_5597 -0.8 -2.1 conserved protein of unknown function compare
PP_5247 -0.8 -2.5 conserved protein of unknown function compare
PP_4952 -0.8 -1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2217 -0.8 -1.2 enoyl-CoA hydratase compare
PP_1045 -0.7 -0.9 Type II secretion pathway protein XcpP compare
PP_2907 -0.7 -1.9 DNA-binding response regulator compare
PP_3916 -0.7 -1.6 conserved protein of unknown function compare
PP_5441 -0.7 -1.7 protein of unknown function compare
PP_2923 -0.7 -2.2 conserved protein of unknown function compare
PP_1034 -0.7 -4.2 multicopper oxidase compare
PP_5471 -0.7 -0.9 putative response regulator receiver protein compare
PP_4679 -0.7 -0.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0502 -0.7 -2.4 conserved protein of unknown function compare
PP_0951 -0.7 -4.1 Ribosome hibernation promoting factor compare
PP_0881 -0.7 -2.4 dipeptide ABC transporter - putative membrane subunit compare
PP_4726 -0.7 -0.8 Chaperone protein DnaJ compare
PP_1232 -0.7 -2.8 conserved exported protein of unknown function compare
PP_t49 -0.7 -2.1 tRNA-Met compare
PP_4517 -0.7 -1.3 conserved protein of unknown function compare
PP_2306 -0.7 -1.6 conserved exported protein of unknown function compare
PP_1862 -0.7 -1.6 conserved membrane protein of unknown function compare
PP_4769 -0.7 -2.1 conserved protein of unknown function compare
PP_4196 -0.7 -1.6 conserved exported protein of unknown function compare
PP_1304 -0.7 -2.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4722 -0.7 -2.1 Transcription elongation factor GreA compare
PP_4835 -0.7 -1.5 conserved exported protein of unknown function compare
PP_1742 -0.7 -1.5 conserved inner membrane protein of unknown function compare
PP_4569 -0.7 -1.3 conserved protein of unknown function compare
PP_1303 -0.7 -1.9 Sulfate adenylyltransferase subunit 2 compare
PP_4910 -0.7 -1.7 conserved protein of unknown function compare
PP_2005 -0.7 -3.0 conserved exported protein of unknown function compare
PP_1994 -0.7 -0.8 tRNA pseudouridine (38-40)synthase compare
PP_0509 -0.7 -2.0 conserved protein of unknown function compare
PP_2319 -0.7 -2.0 conserved protein of unknown function compare
PP_0405 -0.7 -3.4 conserved protein of unknown function compare
PP_0685 -0.7 -1.5 conserved protein of unknown function compare
PP_2107 -0.7 -0.8 conserved protein of unknown function compare
PP_0417 -0.7 -1.9 Anthranilate synthase component 1 compare
PP_0965 -0.7 -0.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1415 -0.7 -1.9 putative membrane associated enzyme subunit compare
PP_0122 -0.7 -1.3 conserved exported protein of unknown function compare
PP_4069 -0.6 -1.4 conserved protein of unknown function compare
PP_5311 -0.6 -3.1 putative signal transduction protein compare
PP_2148 -0.6 -4.0 transcription-repair coupling factor compare
PP_1623 -0.6 -3.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_1384 -0.6 -3.2 Probable efflux pump outer membrane protein TtgC compare
PP_3312 -0.6 -1.0 putative Heat shock protein compare
PP_1207 -0.6 -1.8 conserved protein of unknown function compare
PP_1678 -0.6 -1.5 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0913 -0.6 -2.6 conserved exported protein of unknown function compare
PP_2929 -0.6 -3.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-tyrosine disodium salt in Pseudomonas putida KT2440

For carbon source L-tyrosine disodium salt across organisms