Experiment set47S244 for Pseudomonas putida KT2440

Compare to:

L-tyrosine disodium salt 5 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +2.4 12.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +2.3 5.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4099 +1.8 15.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4999 +1.7 0.9 dihydroorotase-like protein compare
PP_4799 +1.7 0.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1650 +1.7 16.2 Sensor protein GacS compare
PP_1654 +1.6 1.3 cysteine synthase B compare
PP_4265 +1.6 0.9 DNA-binding transcriptional dual regulator compare
PP_4723 +1.5 1.7 Carbamoyl-phosphate synthase large chain compare
PP_0856 +1.5 1.0 conserved lipoprotein of unknown function compare
PP_4701 +1.4 2.4 glucose-6-phosphate isomerase compare
PP_2000 +1.4 0.9 amidophosphoribosyl transferase compare
PP_3999 +1.4 0.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4724 +1.4 0.9 Carbamoyl-phosphate synthase small chain compare
PP_0833 +1.4 0.9 queuine tRNA-ribosyltransferase compare
PP_0691 +1.4 0.9 Glutamate 5-kinase compare
PP_2371 +1.4 1.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1293 +1.4 1.8 molybdopterin synthase small subunit compare
PP_4136 +1.3 2.0 Transcriptional regulator, LuxR family compare
PP_4126 +1.3 0.8 NADH-quinone oxidoreductase subunit I compare
PP_1986 +1.2 0.7 3-isopropylmalate dehydratase small subunit compare
PP_5014 +1.2 0.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_4296 +1.1 2.6 conserved exported protein of unknown function compare
PP_5706 +1.0 1.9 Sec translocation complex - SecG subunit compare
PP_2121 +1.0 1.9 putative Lipoprotein compare
PP_4271 +1.0 1.8 conserved protein of unknown function compare
PP_4253 +1.0 2.6 cytochrome c oxidase subunit, cbb3-type compare
PP_0364 +1.0 5.7 pimeloyl-[acp] methyl ester esterase compare
PP_1783 +1.0 1.4 dTDP-glucose pyrophosphorylase compare
PP_4171 +1.0 8.1 conserved exported protein of unknown function compare
PP_4984 +0.9 6.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4997 +0.9 1.4 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5053 +0.9 5.5 Protein-export protein SecB compare
PP_1410 +0.9 1.7 conserved protein of unknown function compare
PP_1683 +0.9 1.2 Transcriptional regulator, MarR family compare
PP_1999 +0.9 1.5 membrane protein required for colicin V production compare
PP_3000 +0.9 3.0 MaoC domain protein compare
PP_3923 +0.9 3.8 Phosphoglycerate mutase compare
PP_4364 +0.9 4.0 putative Anti-sigma F factor antagonist compare
PP_1664 +0.8 1.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_0293 +0.8 0.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4693 +0.8 1.5 RNA polymerase-binding transcription factor DksA compare
PP_0855 +0.8 1.5 conserved protein of unknown function compare
PP_4700 +0.8 0.5 pantothenate synthetase compare
PP_0363 +0.8 5.8 8-amino-7-oxononanoate synthase compare
PP_2414 +0.8 1.1 conserved exported protein of unknown function compare
PP_1381 +0.8 1.6 4-carboxymuconolactone decarboxylase compare
PP_0025 +0.8 1.4 hypothetical protein compare
PP_1757 +0.8 2.4 DNA-binding transcriptional dual regulator compare
PP_2337 +0.8 1.5 aconitate isomerase compare
PP_4561 +0.8 1.1 stress response protein compare
PP_4902 +0.8 0.7 Oligoribonuclease compare
PP_4514 +0.8 6.2 putative esterase of the alpha-beta hydrolase superfamily compare
PP_5674 +0.7 2.4 conserved protein of unknown function compare
PP_1824 +0.7 1.5 Smr domain protein compare
PP_2370 +0.7 0.7 conserved protein of unknown function compare
PP_5610 +0.7 0.8 protein of unknown function compare
PP_0547 +0.7 2.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0365 +0.7 4.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2077 +0.7 2.9 diaminopimelate decarboxylase compare
PP_4470 +0.7 2.8 putative transcriptional regulator (Arc domain-containing) compare
PP_3591 +0.7 2.9 Delta 1-piperideine-2-carboxylate reductase compare
PP_1208 +0.7 1.3 conserved protein of unknown function, SlyX family compare
PP_3924 +0.7 1.7 conserved protein of unknown function compare
PP_0630 +0.7 1.2 DNA gyrase inhibitor YacG compare
PP_5051 +0.7 1.8 conserved protein of unknown function compare
PP_5533 +0.7 1.5 conserved protein of unknown function compare
PP_t57 +0.7 2.3 tRNA-Arg compare
PP_1626 +0.7 4.1 DNA mismatch repair protein MutS compare
PP_3899 +0.7 2.1 conserved protein of unknown function, hicB family compare
PP_5528 +0.7 1.7 conserved protein of unknown function compare
PP_0846 +0.7 0.7 DnaK-like molecular chaperone specific for IscU compare
PP_2142 +0.7 1.7 Cell division inhibitor SulA compare
PP_5331 +0.7 1.7 Long-chain acyl-CoA thioester hydrolase compare
PP_4373 +0.7 5.5 Transcriptional regulator FleQ compare
PP_4961 +0.7 1.5 putative Lipoprotein compare
PP_0368 +0.6 5.2 putative Acyl-CoA dehydrogenase compare
PP_5093 +0.6 1.3 twitching motility protein compare
PP_2332 +0.6 3.0 conserved exported protein of unknown function compare
PP_0152 +0.6 1.6 conserved exported protein of unknown function compare
PP_4895 +0.6 0.8 tRNA dimethylallyltransferase compare
PP_0407 +0.6 2.7 DnaJ-like protein DjlA compare
PP_5027 +0.6 1.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0960 +0.6 2.1 phospholipid ABC transporter binding protein compare
PP_4836 +0.6 2.5 conserved exported protein of unknown function compare
PP_0235 +0.6 2.2 Peroxidase compare
PP_2747 +0.6 0.8 conserved protein of unknown function compare
PP_1004 +0.6 1.4 conserved protein of unknown function compare
PP_4340 +0.6 1.4 response regulator for chemotactic signal transduction compare
PP_3484 +0.6 2.9 Response regulator receiver protein compare
PP_1479 +0.6 2.5 HicB protein compare
PP_3363 +0.6 2.0 putative thymidylate kinase compare
PP_5659 +0.6 1.9 protein of unknown function compare
PP_1535 +0.6 1.8 putative Methyltransferase compare
PP_1550 +0.6 1.9 Transcriptional regulator, Cro/CI family compare
PP_1328 +0.6 1.4 Protein MraZ compare
PP_1237 +0.6 0.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5571 +0.6 1.1 conserved protein of unknown function compare
PP_0022 +0.6 1.0 hypothetical protein compare
PP_5678 +0.6 2.4 protein of unknown function compare
PP_2147 +0.6 1.7 conserved exported protein of unknown function compare
PP_5241 +0.6 1.4 DNA-binding response regulator, LuxR family compare
PP_2163 +0.6 2.5 VacJ lipoprotein compare
PP_5689 +0.6 2.0 conserved protein of unknown function compare
PP_4581 +0.6 1.7 putative amidotransferase compare
PP_0775 +0.6 1.1 conserved protein of unknown function compare
PP_2616 +0.6 2.2 conserved protein of unknown function compare
PP_4710 +0.6 4.3 tRNA pseudouridine 55 synthase compare
PP_2203 +0.6 1.3 conserved protein of unknown function compare
PP_0640 +0.6 1.6 conserved protein of unknown function compare
PP_5445 +0.6 1.4 conserved protein of unknown function compare
PP_5039 +0.6 1.6 conserved protein of unknown function compare
PP_2243 +0.6 2.4 conserved protein of unknown function compare
PP_0958 +0.6 2.1 phospholipid ABC transporter ATP-binding subunit compare
PP_1763 +0.5 1.7 putative oxidoreductase compare
PP_t13 +0.5 1.6 tRNA-Lys compare
PP_5460 +0.5 2.2 conserved membrane protein of unknown function compare
PP_5328 +0.5 0.7 putative phosphate transport system permease protein compare
PP_0536 +0.5 1.9 conserved protein of unknown function compare
PP_0989 +0.5 1.9 glycine cleavage system H protein 1 compare
PP_5491 +0.5 1.5 conserved protein of unknown function with SEC-C motif domain compare
PP_3265 +0.5 1.5 putative phosphohydrolase of unknown function compare
PP_0401 +0.5 1.1 Ribosomal RNA small subunit methyltransferase A compare
PP_2232 +0.5 1.6 XRE family transcriptional regulator compare
PP_3411 +0.5 1.2 conserved protein of unknown function compare
PP_0151 +0.5 2.0 conserved exported protein of unknown function compare
PP_5625 +0.5 1.9 conserved protein of unknown function compare
PP_2899 +0.5 0.6 conserved exported protein of unknown function compare
PP_1017 +0.5 2.5 mannose/glucose ABC transporter, permease protein compare
PP_4173 +0.5 3.9 Sensor histidine kinase/response regulator compare
PP_2954 +0.5 2.5 conserved protein of unknown function compare
PP_0679 +0.5 2.0 conserved exported protein of unknown function compare
PP_5609 +0.5 1.5 conserved protein of unknown function compare
PP_2159 +0.5 1.5 Copper-binding protein, plastocyanin/azurin family compare
PP_2858 +0.5 1.9 conserved exported protein of unknown function compare
PP_3295 +0.5 2.2 YeeE/YedE family protein compare
PP_3508 +0.5 1.4 Protein CobW compare
PP_5107 +0.5 2.2 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_1764 +0.5 1.1 Phosphoglycolate phosphatase 2 compare
PP_2499 +0.5 1.2 conserved protein of unknown function compare
PP_0929 +0.5 2.2 putative Lipoprotein compare
PP_5661 +0.5 1.7 putative lipoprotein compare
PP_1264 +0.5 2.6 putative Fusaric acid resistance protein compare
PP_4375 +0.5 2.6 flagellar chaperone, inhibits premature FliC assembly compare
PP_0379 +0.5 2.2 Coenzyme PQQ synthesis protein B compare
PP_4896 +0.5 3.2 DNA mismatch repair protein MutL compare
PP_5500 +0.5 1.4 protein of unknown function compare
PP_4054 +0.5 1.6 conserved protein of unknown function compare
PP_2513 +0.5 1.7 4-oxalomesaconate tautomerase compare
PP_2231 +0.5 1.5 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_3339 +0.5 2.0 conserved exported protein of unknown function compare
PP_5687 +0.5 2.0 putative permease of the major facilitator superfamily compare
PP_5267 +0.5 0.7 putative cytochrome c5 compare
PP_4604 +0.5 2.3 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_4227 +0.5 0.9 conserved protein of unknown function compare
PP_4121 +0.5 1.0 NADH-quinone oxidoreductase subunit C/D compare
PP_2557 +0.5 1.9 Sensory box protein compare
PP_1555 +0.5 1.9 putative Phage integrase compare
PP_5253 +0.5 1.0 Arylesterase compare
PP_1803 +0.5 3.4 UDP-sugar epimerase compare
PP_5547 +0.5 1.9 protein of unknown function compare
PP_4631 +0.5 1.5 conserved protein of unknown function compare
PP_5541 +0.5 1.9 conserved protein of unknown function compare
PP_5106 +0.5 1.5 conserved inner membrane protein compare
PP_0961 +0.5 2.1 toluene tolerance protein compare
PP_1167 +0.5 2.1 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) compare
PP_2341 +0.5 0.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1176 +0.5 1.1 conserved protein of unknown function compare
PP_2889 +0.5 3.4 putative Transmembrane regulator PrtR compare
PP_0335 +0.5 1.6 Glutathione S-transferase family protein compare
PP_4224 +0.5 1.9 Sensor histidine kinase compare
PP_1096 +0.5 0.8 putative electron transport complex protein compare
PP_0366 +0.5 2.3 dethiobiotin synthetase compare
PP_4260 +0.5 1.7 conserved protein of unknown function compare
PP_3127 +0.5 2.0 putative Exopolysaccharide transport protein compare
PP_1379 +0.5 2.3 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_0677 +0.5 1.1 putative Lipoprotein compare
PP_1454 +0.5 1.2 conserved protein of unknown function compare
PP_2831 +0.5 2.2 L-fuconate dehydratase compare
PP_1544 +0.5 1.2 conserved protein of unknown function compare
PP_5176 +0.4 1.3 conserved protein of unknown function compare
PP_0593 +0.4 0.6 putative ribosome-binding factor compare
PP_5187 +0.4 1.7 putative thiamine triphosphatase compare
PP_0621 +0.4 1.5 conserved protein of unknown function compare
PP_0154 +0.4 2.5 Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data) compare
PP_5483 +0.4 1.3 conserved protein of unknown function compare
PP_1529 +0.4 2.2 Probable cysteine desulfurase compare
PP_2717 +0.4 2.1 arsenite/antimonite transporter compare
PP_5168 +0.4 1.4 sulfate/thiosulfate import ATP-binding protein compare
PP_1126 +0.4 3.6 putative Hydrolase compare
PP_1444 +0.4 2.8 quinoprotein glucose dehydrogenase compare
PP_4045 +0.4 1.2 conserved protein of unknown function compare
PP_1000 +0.4 1.2 ornithine carbamoyltransferase, catabolic compare
PP_0627 +0.4 0.8 conserved protein of unknown function compare
PP_0963 +0.4 1.1 putative BolA family protein compare
PP_4168 +0.4 1.2 conserved protein of unknown function compare
PP_3893 +0.4 2.1 putative Phage DNA helicase compare
PP_2550 +0.4 1.3 putative transcriptional regulatory protein compare
PP_0356 +0.4 1.3 malate synthase G compare
PP_2297 +0.4 3.0 putative integrative genetic element Ppu40, integrase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-tyrosine disodium salt in Pseudomonas putida KT2440

For carbon source L-tyrosine disodium salt across organisms