Experiment set47S239 for Pseudomonas putida KT2440

Compare to:

mixed carbon sources Trisodium citrate dihydrate 10 mM and Parachlorophenylalanine 10 mM

200 most important genes:

  gene name fitness t score description  
PP_5104 -5.2 -5.0 thiazole synthase compare
PP_4922 -4.4 -10.9 Phosphomethylpyrimidine synthase compare
PP_1142 -4.3 -1.9 conserved protein of unknown function compare
PP_1421 -4.3 -6.5 putative Sensor histidine kinase TctE compare
PP_1215 -4.2 -2.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_1233 -3.9 -2.7 sulfurtransferase compare
PP_1418 -3.9 -4.6 putative Tricarboxylate transport protein TctC compare
PP_1420 -3.9 -5.9 Transcriptional regulatory protein tctD compare
PP_2552 -3.8 -9.2 DOPA decarboxylase compare
PP_5075 -3.7 -13.8 glutamate synthase (NADPH) beta subunit compare
PP_1231 -3.4 -2.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -3.4 -2.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2550 -3.1 -3.0 putative transcriptional regulatory protein compare
PP_0735 -3.1 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_1079 -3.0 -2.1 Ornithine carbamoyltransferase compare
PP_2121 -2.9 -2.0 putative Lipoprotein compare
PP_0273 -2.9 -3.3 conserved protein of unknown function compare
PP_2551 -2.9 -5.1 Transcriptional regulator, LysR family compare
PP_1348 -2.8 -4.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4937 -2.7 -2.6 toluene tolerance protein compare
PP_3726 -2.5 -2.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_5076 -2.5 -13.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_3790 -2.4 -5.9 diaminopimelate epimerase compare
PP_5035 -2.4 -6.0 Histidine utilization repressor compare
PP_5093 -2.4 -1.2 twitching motility protein compare
PP_t12 -2.4 -1.5 tRNA-Thr compare
PP_0435 -2.3 -5.7 Peptidase, M23/M37 family compare
PP_0063 -2.3 -5.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2390 -2.3 -6.2 Transcriptional regulator, LysR family compare
PP_0048 -2.2 -1.7 conserved protein of unknown function compare
PP_4943 -2.2 -2.1 putative Glycosyl transferase compare
PP_4782 -2.2 -3.9 Phosphomethylpyrimidine kinase compare
PP_2388 -2.2 -3.0 Transporter, LysE family compare
PP_5303 -2.1 -4.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3505 -2.1 -2.0 conserved protein of unknown function compare
PP_1623 -2.1 -7.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_0119 -2.1 -3.4 putative zinc uptake regulation protein ZUR compare
PP_1198 -2.0 -2.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4060 -2.0 -8.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4696 -2.0 -1.4 Nitrogen regulation protein NR(I) compare
PP_3946 -2.0 -1.5 HTH-type transcriptional repressor NicR compare
PP_2820 -1.9 -2.9 HTH-type transcriptional regulator nfxB compare
PP_4942 -1.9 -2.6 conserved protein of unknown function compare
PP_0276 -1.9 -1.7 Transcriptional regulator, Cro/CI family compare
PP_3157 -1.9 -6.3 Inositol monophosphatase family protein compare
PP_0291 -1.9 -2.2 conserved protein of unknown function compare
PP_1088 -1.8 -1.2 Argininosuccinate synthase compare
PP_0184 -1.8 -1.2 Argininosuccinate lyase compare
PP_2001 -1.8 -1.7 O-succinylhomoserine sulfhydrylase compare
PP_1898 -1.8 -1.2 MotA/TolQ/ExbB proton channel family protein compare
PP_0834 -1.7 -1.2 Sec translocation complex subunit YajC compare
PP_5097 -1.7 -1.1 homoserine O-acetyltransferase compare
PP_4122 -1.6 -1.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1303 -1.6 -3.9 Sulfate adenylyltransferase subunit 2 compare
PP_4890 -1.6 -1.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_2144 -1.6 -2.4 Transcriptional regulator, TetR family compare
PP_1892 -1.6 -2.8 conserved protein of unknown function compare
PP_1366 -1.6 -1.6 Transcriptional regulator MvaT, P16 subunit compare
PP_4532 -1.5 -1.8 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1415 -1.5 -3.1 putative membrane associated enzyme subunit compare
PP_0406 -1.5 -2.5 Nucleotidyltransferase family protein compare
PP_2088 -1.5 -3.0 RNA polymerase sigma factor SigX compare
PP_1055 -1.5 -1.8 Type II secretion pathway protein GspN compare
PP_4008 -1.5 -2.5 ATP-dependent serine protease compare
PP_2090 -1.5 -2.8 Uroporphyrinogen-III C-methyltransferase compare
PP_1672 -1.5 -3.5 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4699 -1.5 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0417 -1.5 -2.4 Anthranilate synthase component 1 compare
PP_1938 -1.5 -2.4 conserved protein of unknown function compare
PP_1417 -1.4 -2.8 putative Tricarboxylate transport protein TctB conserved
PP_0422 -1.4 -1.0 Indole-3-glycerol phosphate synthase compare
PP_0346 -1.4 -4.6 putative Heptose kinase WapQ compare
PP_2327 -1.4 -1.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2695 -1.4 -2.4 Transcriptional regulator, LysR family compare
PP_4892 -1.4 -4.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2360 -1.3 -3.9 putative type 1 pili subunit CsuA/B protein compare
PP_4546 -1.3 -2.6 ATP-dependent helicase HrpA compare
PP_2433 -1.3 -0.9 conserved protein of unknown function compare
PP_2348 -1.3 -2.9 Sensor histidine kinase compare
PP_2720 -1.3 -1.5 conserved protein of unknown function compare
PP_3892 -1.3 -1.5 conserved protein of unknown function compare
PP_4679 -1.3 -0.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5328 -1.3 -0.9 putative phosphate transport system permease protein compare
PP_4517 -1.3 -2.2 conserved protein of unknown function compare
PP_0339 -1.3 -1.7 Pyruvate dehydrogenase E1 component compare
PP_5227 -1.3 -6.2 diaminopimelate decarboxylase compare
PP_3527 -1.3 -6.4 Transcriptional regulator, TetR family conserved
PP_0960 -1.3 -3.2 phospholipid ABC transporter binding protein compare
PP_1635 -1.2 -1.3 DNA-binding response regulator compare
PP_1317 -1.2 -2.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1217 -1.2 -3.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0937 -1.2 -3.0 endoribonuclease G (RNAse G) compare
PP_4941 -1.2 -3.7 conserved exported protein of unknown function compare
PP_0967 -1.2 -0.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0547 -1.2 -2.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4722 -1.2 -2.6 Transcription elongation factor GreA compare
PP_1757 -1.2 -2.3 DNA-binding transcriptional dual regulator compare
PP_2908 -1.2 -2.8 DNA-binding transcriptional repressor compare
PP_1002 -1.2 -2.5 arginine/ornithine antiporter compare
PP_0303 -1.2 -2.3 dehydrocarnitine cleavage enzyme compare
PP_4261 -1.2 -2.5 cation-transporting P-type ATPase compare
PP_0362 -1.2 -5.2 Biotin synthase compare
PP_4528 -1.2 -1.9 conserved protein of unknown function compare
PP_0995 -1.2 -3.0 conserved membrane protein of unknown function compare
PP_0965 -1.2 -1.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4356 -1.2 -3.1 Flagellar protein FliO compare
PP_5223 -1.2 -2.4 regulator of nucleotide diphosphokinase compare
PP_0290 -1.1 -0.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1419 -1.1 -3.4 tricarboxylate-specific outer membrane porin compare
PP_1025 -1.1 -3.4 2-isopropylmalate synthase compare
PP_5279 -1.1 -1.7 conserved protein of unknown function compare
PP_5225 -1.1 -1.3 frataxin compare
PP_0040 -1.1 -2.6 hypothetical protein compare
PP_0292 -1.1 -0.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3378 -1.1 -1.9 putative 2-ketogluconokinase compare
PP_1468 -1.1 -1.0 Tyrosine recombinase XerD compare
PP_5185 -1.1 -0.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4678 -1.1 -0.8 Ketol-acid reductoisomerase compare
PP_5475 -1.1 -0.9 conserved protein of unknown function compare
PP_0999 -1.1 -1.9 carbamate kinase compare
PP_4738 -1.1 -2.2 conserved exported protein of unknown function compare
PP_3952 -1.1 -4.9 3-oxoadipate CoA-transferase subunit A compare
PP_3597 -1.1 -2.0 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_1304 -1.1 -3.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0951 -1.1 -5.0 Ribosome hibernation promoting factor compare
PP_0393 -1.1 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3034 -1.1 -2.1 putative Regulator protein compare
PP_0345 -1.1 -1.5 putative Heptose kinase WapP compare
PP_2087 -1.1 -1.6 CmpX protein compare
PP_4591 -1.1 -2.1 Ribonuclease D compare
PP_2880 -1.1 -1.7 Transcriptional regulator, TetR family compare
PP_2890 -1.1 -2.8 exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI compare
PP_2976 -1.1 -1.4 putative transposase compare
PP_4069 -1.1 -2.1 conserved protein of unknown function compare
PP_5274 -1.1 -1.9 conserved protein of unknown function compare
PP_1268 -1.1 -1.8 putative HtrA suppressor protein sohA compare
PP_1935 -1.0 -2.1 Transcriptional regulator, Cro/CI family compare
PP_3511 -1.0 -0.7 Branched-chain-amino-acid aminotransferase compare
PP_2122 -1.0 -2.5 molybdenum cofactor biosynthesis protein B compare
PP_2748 -1.0 -1.7 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_4379 -1.0 -2.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0147 -1.0 -4.5 Citrate transporter conserved
PP_4004 -1.0 -2.7 DNA translocase FtsK compare
PP_1001 -1.0 -1.2 arginine deiminase compare
PP_2402 -1.0 -0.7 putative Sensor histidine kinase compare
PP_5519 -1.0 -2.0 conserved protein of unknown function of phage origin compare
PP_0703 -1.0 -2.1 putative Transmembrane sensor compare
PP_1553 -1.0 -2.1 conserved protein of unknown function compare
PP_2031 -1.0 -2.0 conserved protein of unknown function compare
PP_2029 -1.0 -2.4 von Willebrand factor type A domain protein compare
PP_2081 -1.0 -2.8 putative phosphoenolpyruvate synthase regulatory protein compare
PP_4018 -1.0 -2.6 Acetyltransferase, GNAT family compare
PP_3359 -1.0 -2.5 putative Hydroxycinnamic acid degradation regulator compare
PP_2336 -1.0 -2.3 aconitate hydratase 1 compare
PP_t10 -1.0 -1.3 tRNA-Pro compare
PP_2868 -1.0 -3.6 Transcriptional regulator, Cro/CI family compare
PP_1783 -1.0 -0.9 dTDP-glucose pyrophosphorylase compare
PP_3098 -1.0 -1.2 conserved protein of unknown function compare
PP_1697 -1.0 -2.4 transcriptional regulator, GntR family compare
PP_4009 -1.0 -2.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_5658 -0.9 -1.5 protein of unknown function compare
PP_5090 -0.9 -1.2 putative cell division protein compare
PP_2928 -0.9 -4.1 Saccharopine dehydrogenase compare
PP_0185 -0.9 -3.6 Positive alginate biosynthesis regulatory protein compare
PP_1364 -0.9 -3.4 conserved exported protein of unknown function compare
PP_2118 -0.9 -1.5 conserved protein of unknown function compare
PP_1677 -0.9 -2.2 Adenosyl-cobyric acid synthase compare
PP_3874 -0.9 -1.5 conserved protein of unknown function compare
PP_2322 -0.9 -1.9 Major outer membrane lipoprotein compare
PP_3590 -0.9 -2.5 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4129 -0.9 -0.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2819 -0.9 -3.2 Outer membrane protein OprJ compare
PP_5338 -0.9 -1.9 aspartate ammonia-lyase compare
PP_0001 -0.9 -0.8 probable chromosome-partitioning protein compare
PP_1763 -0.9 -1.9 putative oxidoreductase compare
PP_2835 -0.9 -2.7 putative oxidoreductase compare
PP_1790 -0.9 -2.7 putative Acylneuraminate cytidylyltransferase compare
PP_3471 -0.9 -2.5 conserved protein of unknown function compare
PP_1943 -0.9 -3.4 formyltetrahydrofolate deformylase compare
PP_5674 -0.9 -1.8 conserved protein of unknown function compare
PP_1309 -0.9 -3.6 conserved exported protein of unknown function compare
PP_5052 -0.9 -1.2 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_1216 -0.9 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5028 -0.9 -1.9 proline iminopeptidase compare
PP_2568 -0.9 -1.0 Ring-cleaving dioxygenase compare
PP_5203 -0.9 -3.8 5-formyltetrahydrofolate cyclo-ligase compare
PP_0440 -0.9 -1.2 Elongation factor Tu-A compare
PP_0957 -0.9 -1.3 D-arabinose 5-phosphate isomerase compare
PP_3374 -0.9 -3.1 conserved protein of unknown function compare
PP_2510 -0.9 -1.2 conserved protein of unknown function compare
PP_5145 -0.9 -7.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2330 -0.9 -1.5 conserved protein of unknown function compare
PP_2320 -0.9 -5.0 conserved exported protein of unknown function compare
PP_0943 -0.9 -2.3 conserved protein of unknown function compare
PP_1344 -0.9 -1.1 conserved protein of unknown function compare
PP_4332 -0.9 -2.8 Chemotaxis protein CheW compare
PP_2929 -0.9 -3.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5086 -0.9 -4.1 putative nuclease (SNase domain protein) compare
PP_5140 -0.9 -1.8 Transcriptional regulator, MerR family compare
PP_4695 -0.8 -4.5 Sensory box histidine kinase compare


Specific Phenotypes

For 6 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For mixed carbon source Trisodium citrate dihydrate across organisms