Experiment set47S234 for Pseudomonas putida KT2440

Compare to:

mixed carbon sources Trisodium citrate dihydrate 10 mM and L-Meta-tyrosine 10 mM

200 most important genes:

  gene name fitness t score description  
PP_4922 -5.4 -10.3 Phosphomethylpyrimidine synthase compare
PP_5104 -5.3 -7.2 thiazole synthase compare
PP_1420 -4.9 -3.4 Transcriptional regulatory protein tctD compare
PP_4782 -4.9 -3.4 Phosphomethylpyrimidine kinase compare
PP_3527 -4.7 -11.8 Transcriptional regulator, TetR family conserved
PP_1635 -4.5 -2.6 DNA-binding response regulator compare
PP_1418 -4.4 -4.3 putative Tricarboxylate transport protein TctC compare
PP_1233 -4.2 -2.9 sulfurtransferase compare
PP_1421 -4.1 -8.6 putative Sensor histidine kinase TctE compare
PP_1231 -3.8 -2.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -3.7 -2.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3951 -3.7 -4.4 3-oxoadipate CoA-transferase subunit A compare
PP_0959 -3.6 -2.5 phospholipid ABC transporter compare
PP_2581 -3.5 -1.6 conserved protein of unknown function compare
PP_4490 -3.5 -6.9 phenylalanine-4-hydroxylase compare
PP_0735 -3.4 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_1079 -3.4 -2.3 Ornithine carbamoyltransferase compare
PP_0653 -3.1 -1.8 conserved protein of unknown function compare
PP_3506 -3.0 -3.1 Magnesium chelatase, subunit ChII compare
PP_0888 -3.0 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_4917 -2.9 -4.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1348 -2.9 -5.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5303 -2.8 -4.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4489 -2.8 -9.9 sigma-54 dependent transcriptional regulator compare
PP_1812 -2.7 -2.5 conserved protein of unknown function compare
PP_1074 -2.7 -3.4 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4268 -2.7 -1.3 nucleoid-associated broad specificity regulator compare
PP_2088 -2.6 -3.8 RNA polymerase sigma factor SigX compare
PP_4943 -2.6 -2.5 putative Glycosyl transferase compare
PP_0962 -2.6 -3.1 toluene-tolerance protein compare
PP_2306 -2.5 -2.3 conserved exported protein of unknown function compare
PP_t29 -2.5 -1.5 tRNA-Ala compare
PP_0406 -2.4 -3.5 Nucleotidyltransferase family protein compare
PP_1097 -2.4 -1.0 Methionine--tRNA ligase compare
PP_5076 -2.4 -11.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_5017 -2.4 -1.4 Sec-independent protein translocase protein TatB compare
PP_3952 -2.4 -4.5 3-oxoadipate CoA-transferase subunit A compare
PP_0276 -2.4 -1.6 Transcriptional regulator, Cro/CI family compare
PP_1999 -2.3 -1.7 membrane protein required for colicin V production compare
PP_0063 -2.3 -4.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4696 -2.3 -1.6 Nitrogen regulation protein NR(I) compare
PP_1734 -2.3 -4.3 Probable septum site-determining protein MinC compare
PP_3603 -2.2 -5.5 Transcriptional regulator, GntR family compare
PP_3924 -2.2 -2.6 conserved protein of unknown function compare
PP_3590 -2.2 -4.8 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4262 -2.2 -2.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0846 -2.2 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_2001 -2.2 -1.5 O-succinylhomoserine sulfhydrylase compare
PP_4824 -2.1 -7.0 Sensor histidine kinase/response regulator compare
PP_1866 -2.1 -5.6 Phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4937 -2.1 -3.8 toluene tolerance protein compare
PP_1088 -2.1 -1.4 Argininosuccinate synthase compare
PP_2324 -2.1 -3.3 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5097 -2.1 -1.4 homoserine O-acetyltransferase compare
PP_2820 -2.0 -2.9 HTH-type transcriptional regulator nfxB compare
PP_1898 -2.0 -1.4 MotA/TolQ/ExbB proton channel family protein compare
PP_3790 -2.0 -4.5 diaminopimelate epimerase compare
PP_4890 -1.9 -1.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_5267 -1.9 -1.5 putative cytochrome c5 compare
PP_5075 -1.9 -7.7 glutamate synthase (NADPH) beta subunit compare
PP_0184 -1.9 -1.8 Argininosuccinate lyase compare
PP_0345 -1.8 -2.3 putative Heptose kinase WapP compare
PP_0339 -1.8 -1.3 Pyruvate dehydrogenase E1 component compare
PP_0422 -1.8 -1.2 Indole-3-glycerol phosphate synthase compare
PP_4695 -1.8 -7.5 Sensory box histidine kinase compare
PP_0841 -1.8 -2.5 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_3715 -1.8 -2.7 Muconate cycloisomerase 1 compare
PP_0593 -1.8 -1.0 putative ribosome-binding factor compare
PP_5289 -1.8 -1.2 Acetylglutamate kinase compare
PP_4213 -1.8 -2.4 putative dipeptidase compare
PP_1304 -1.8 -5.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0893 -1.7 -2.7 ThiJ/PfpI family protein compare
PP_0417 -1.7 -4.0 Anthranilate synthase component 1 compare
PP_0754 -1.7 -3.5 conserved protein of unknown function compare
PP_4008 -1.7 -3.4 ATP-dependent serine protease compare
PP_5652 -1.7 -1.6 conserved protein of unknown function, phage origin compare
PP_0185 -1.7 -6.6 Positive alginate biosynthesis regulatory protein compare
PP_1303 -1.7 -4.0 Sulfate adenylyltransferase subunit 2 compare
PP_5328 -1.7 -1.1 putative phosphate transport system permease protein compare
PP_3730 -1.6 -1.8 Transcriptional regulatory protein AruR compare
PP_4004 -1.6 -2.9 DNA translocase FtsK compare
PP_4060 -1.6 -6.3 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0246 -1.6 -2.2 two-component system DNA-binding response transcriptional dual regulator compare
PP_3946 -1.6 -1.1 HTH-type transcriptional repressor NicR compare
PP_1364 -1.6 -4.9 conserved exported protein of unknown function compare
PP_4679 -1.6 -1.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2976 -1.6 -1.6 putative transposase compare
PP_3449 -1.6 -2.0 conserved exported protein of unknown function compare
PP_0945 -1.6 -1.8 conserved protein of unknown function compare
PP_2378 -1.6 -1.8 Fe/S biogenesis protein NfuA compare
PP_2433 -1.5 -0.9 conserved protein of unknown function compare
PP_5327 -1.5 -2.7 putative phosphate ABC transporter, permease subunit compare
PP_0435 -1.5 -5.1 Peptidase, M23/M37 family compare
PP_0346 -1.5 -4.3 putative Heptose kinase WapQ compare
PP_1568 -1.5 -1.3 conserved protein of unknown function compare
PP_5185 -1.5 -1.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0967 -1.5 -1.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5471 -1.5 -1.6 putative response regulator receiver protein compare
PP_0164 -1.5 -3.8 conserved protein of unknown function compare
PP_0393 -1.4 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4814 -1.4 -1.9 ATP-dependent protease La domain protein compare
PP_2122 -1.4 -2.8 molybdenum cofactor biosynthesis protein B compare
PP_3064 -1.4 -2.5 Phage tail protein compare
PP_1008 -1.4 -1.7 RNA polymerase subunit sigma-24 compare
PP_3378 -1.4 -1.9 putative 2-ketogluconokinase compare
PP_4699 -1.4 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0965 -1.4 -1.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5609 -1.4 -2.5 conserved protein of unknown function compare
PP_4678 -1.4 -0.9 Ketol-acid reductoisomerase compare
PP_3241 -1.4 -1.1 conserved exported protein of unknown function compare
PP_5294 -1.4 -3.4 Ribonuclease PH compare
PP_3409 -1.4 -1.4 putative Cobalamin biosynthesis protein cobE compare
PP_0261 -1.3 -2.7 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_t10 -1.3 -1.2 tRNA-Pro compare
PP_2070 -1.3 -1.5 Transcriptional regulator, AraC family compare
PP_1020 -1.3 -1.1 putative glucose-6-phosphate 1-epimerase compare
PP_0589 -1.3 -4.0 Bcr/CflA family multidrug resistance transporter compare
PP_3460 -1.3 -1.4 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_2327 -1.3 -2.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5426 -1.3 -3.4 conserved protein of unknown function compare
PP_1679 -1.3 -1.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4942 -1.3 -2.0 conserved protein of unknown function compare
PP_3234 -1.3 -3.1 Heat shock protein, HSP20 family compare
PP_3770 -1.3 -1.8 conserved protein of unknown function compare
PP_2214 -1.3 -3.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5227 -1.3 -5.6 diaminopimelate decarboxylase compare
PP_0290 -1.3 -1.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1268 -1.3 -2.0 putative HtrA suppressor protein sohA compare
PP_2313 -1.2 -1.3 conserved membrane protein of unknown function compare
PP_3810 -1.2 -2.1 conserved protein of unknown function compare
PP_3511 -1.2 -0.8 Branched-chain-amino-acid aminotransferase compare
PP_1041 -1.2 -1.2 twin arginine protein export complex subunit compare
PP_3880 -1.2 -1.2 conserved exported protein of unknown function compare
PP_4793 -1.2 -1.4 conserved protein of unknown function compare
PP_3098 -1.2 -1.1 conserved protein of unknown function compare
PP_4058 -1.2 -0.8 1,4-alpha-glucan branching enzyme compare
PP_2900 -1.2 -1.6 conserved protein of unknown function compare
PP_0340 -1.2 -6.1 Glutamate-ammonia-ligase adenylyltransferase compare
PP_1377 -1.2 -4.1 beta-ketoadipyl-CoA thiolase compare
PP_4726 -1.2 -1.5 Chaperone protein DnaJ compare
PP_0874 -1.2 -0.7 conserved protein of unknown function compare
PP_0961 -1.1 -3.7 toluene tolerance protein compare
PP_4204 -1.1 -2.7 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5313 -1.1 -2.7 DNA-binding protein HU-alpha compare
PP_1826 -1.1 -1.1 Hydrolase, isochorismatase family compare
PP_2168 -1.1 -1.3 Transaldolase compare
PP_2144 -1.1 -2.3 Transcriptional regulator, TetR family compare
PP_2078 -1.1 -2.1 transcriptional activator protein LysR compare
PP_4621 -1.1 -4.2 Homogentisate 1,2-dioxygenase compare
PP_2337 -1.1 -1.9 aconitate isomerase compare
PP_4247 -1.1 -1.0 Exonuclease compare
PP_1995 -1.1 -0.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5475 -1.1 -1.0 conserved protein of unknown function compare
PP_3110 -1.1 -1.9 protein of unknown function compare
PP_5519 -1.1 -1.5 conserved protein of unknown function of phage origin compare
PP_2330 -1.1 -1.5 conserved protein of unknown function compare
PP_2163 -1.1 -2.6 VacJ lipoprotein compare
PP_5128 -1.1 -2.7 Dihydroxy-acid dehydratase compare
PP_5582 -1.1 -1.0 conserved protein of unknown function compare
PP_5707 -1.1 -2.8 conserved protein of unknown function compare
PP_0848 -1.0 -1.5 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2922 -1.0 -3.0 Urea amidolyase-related protein compare
PP_2510 -1.0 -1.0 conserved protein of unknown function compare
PP_2397 -1.0 -3.1 EF hand domain protein compare
PP_4069 -1.0 -2.9 conserved protein of unknown function compare
PP_5558 -1.0 -2.1 putative transcriptional xre family of phage origin compare
PP_3808 -1.0 -0.8 Antibiotic synthesis protein MbtH compare
PP_4785 -1.0 -2.7 conserved exported protein of unknown function compare
PP_3307 -1.0 -1.7 conserved protein of unknown function compare
PP_3789 -1.0 -4.3 putative Efflux transporter compare
PP_2029 -1.0 -1.4 von Willebrand factor type A domain protein compare
PP_2336 -1.0 -2.2 aconitate hydratase 1 compare
PP_2281 -1.0 -2.9 putative Capsid assembly protein compare
PP_1985 -1.0 -0.7 3-isopropylmalate dehydratase large subunit compare
PP_3821 -1.0 -3.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4994 -1.0 -1.4 conserved protein of unknown function compare
PP_2348 -1.0 -1.9 Sensor histidine kinase compare
PP_1513 -1.0 -1.9 Ribosomal RNA small subunit methyltransferase J compare
PP_3823 -1.0 -3.0 Cytochrome c-type protein compare
PP_5230 -1.0 -1.7 Tyrosine recombinase XerC compare
PP_2121 -1.0 -1.1 putative Lipoprotein compare
PP_3891 -1.0 -2.1 conserved protein of unknown function compare
PP_0421 -1.0 -2.5 Anthranilate phosphoribosyltransferase compare
PP_1128 -1.0 -2.5 OmpA family protein compare
PP_3231 -1.0 -2.6 conserved protein of unknown function compare
PP_4373 -1.0 -5.6 Transcriptional regulator FleQ compare
PP_0504 -1.0 -2.6 Outer membrane protein OprG compare
PP_0995 -0.9 -2.3 conserved membrane protein of unknown function compare
PP_4546 -0.9 -2.4 ATP-dependent helicase HrpA compare
PP_1239 -0.9 -3.0 Metallo-beta-lactamase family protein compare
PP_5146 -0.9 -4.7 RNA pyrophosphohydrolase compare
PP_4792 -0.9 -1.7 conserved exported protein of unknown function compare
PP_5098 -0.9 -0.6 methionine biosynthesis protein MetW compare
PP_0792 -0.9 -3.2 catabolite repressor-activator, DNA-binding transcriptional dual regulator compare
PP_0289 -0.9 -1.8 Imidazoleglycerol-phosphate dehydratase compare
PP_5035 -0.9 -2.9 Histidine utilization repressor compare
PP_4392 -0.9 -4.2 chemotaxis protein methyltransferase compare
PP_5236 -0.9 -3.9 conserved protein of unknown function compare
PP_5114 -0.9 -1.1 putative adenine methyltransferase compare
PP_0092 -0.9 -2.3 putative lipoprotein compare


Specific Phenotypes

For 7 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For mixed carbon source Trisodium citrate dihydrate across organisms