Experiment set47S233 for Pseudomonas putida KT2440

Compare to:

mixed carbon sources Trisodium citrate dihydrate 10 mM and L-Meta-tyrosine 10 mM

200 most important genes:

  gene name fitness t score description  
PP_4922 -5.3 -10.7 Phosphomethylpyrimidine synthase compare
PP_5104 -5.2 -7.1 thiazole synthase compare
PP_1420 -4.9 -3.4 Transcriptional regulatory protein tctD compare
PP_1418 -4.7 -3.2 putative Tricarboxylate transport protein TctC compare
PP_4782 -4.5 -4.4 Phosphomethylpyrimidine kinase compare
PP_1233 -4.3 -2.9 sulfurtransferase compare
PP_1231 -3.8 -2.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1421 -3.8 -7.8 putative Sensor histidine kinase TctE compare
PP_0787 -3.7 -2.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3527 -3.6 -12.2 Transcriptional regulator, TetR family conserved
PP_1079 -3.4 -2.3 Ornithine carbamoyltransferase compare
PP_0735 -3.3 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_3590 -3.1 -8.5 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_5303 -3.1 -5.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0435 -2.6 -6.7 Peptidase, M23/M37 family compare
PP_4937 -2.5 -3.8 toluene tolerance protein compare
PP_4696 -2.3 -1.6 Nitrogen regulation protein NR(I) compare
PP_2001 -2.2 -1.5 O-succinylhomoserine sulfhydrylase compare
PP_1088 -2.2 -1.5 Argininosuccinate synthase compare
PP_0184 -2.2 -1.5 Argininosuccinate lyase compare
PP_4489 -2.1 -11.4 sigma-54 dependent transcriptional regulator compare
PP_5075 -2.1 -12.3 glutamate synthase (NADPH) beta subunit compare
PP_3790 -2.1 -7.5 diaminopimelate epimerase compare
PP_4917 -2.1 -4.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1348 -2.0 -4.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4008 -2.0 -3.0 ATP-dependent serine protease compare
PP_5097 -2.0 -1.9 homoserine O-acetyltransferase compare
PP_3952 -2.0 -7.2 3-oxoadipate CoA-transferase subunit A compare
PP_4890 -2.0 -1.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_1303 -1.9 -4.8 Sulfate adenylyltransferase subunit 2 compare
PP_0339 -1.9 -1.3 Pyruvate dehydrogenase E1 component compare
PP_5076 -1.9 -13.6 L-glutamate synthase(NADPH) alpha subunit compare
PP_0422 -1.9 -1.3 Indole-3-glycerol phosphate synthase compare
PP_3951 -1.8 -4.8 3-oxoadipate CoA-transferase subunit A compare
PP_4695 -1.8 -9.5 Sensory box histidine kinase compare
PP_0589 -1.8 -7.9 Bcr/CflA family multidrug resistance transporter compare
PP_0346 -1.8 -7.8 putative Heptose kinase WapQ compare
PP_0063 -1.8 -5.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5289 -1.8 -1.2 Acetylglutamate kinase compare
PP_1198 -1.8 -3.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0417 -1.8 -3.9 Anthranilate synthase component 1 compare
PP_4490 -1.8 -7.5 phenylalanine-4-hydroxylase compare
PP_4004 -1.7 -3.9 DNA translocase FtsK compare
PP_2327 -1.7 -1.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4824 -1.6 -5.8 Sensor histidine kinase/response regulator compare
PP_1866 -1.6 -7.1 Phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4679 -1.6 -1.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1366 -1.6 -2.3 Transcriptional regulator MvaT, P16 subunit compare
PP_5701 -1.6 -2.6 conserved protein of unknown function compare
PP_0290 -1.6 -1.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5185 -1.5 -1.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0967 -1.5 -1.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0888 -1.5 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_t29 -1.5 -2.2 tRNA-Ala compare
PP_0345 -1.5 -3.8 putative Heptose kinase WapP compare
PP_0406 -1.5 -2.5 Nucleotidyltransferase family protein compare
PP_2857 -1.4 -2.9 conserved exported protein of unknown function compare
PP_4678 -1.4 -1.3 Ketol-acid reductoisomerase compare
PP_0965 -1.4 -2.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4622 -1.4 -2.4 Hmg transcriptional repressor compare
PP_1826 -1.4 -2.4 Hydrolase, isochorismatase family compare
PP_1734 -1.3 -3.5 Probable septum site-determining protein MinC compare
PP_5313 -1.3 -2.4 DNA-binding protein HU-alpha compare
PP_4621 -1.3 -7.4 Homogentisate 1,2-dioxygenase compare
PP_5017 -1.3 -1.5 Sec-independent protein translocase protein TatB compare
PP_0292 -1.3 -1.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0685 -1.2 -2.9 conserved protein of unknown function compare
PP_4941 -1.2 -4.1 conserved exported protein of unknown function compare
PP_1304 -1.2 -4.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1733 -1.2 -2.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_1269 -1.2 -1.5 Universal stress protein family compare
PP_0185 -1.2 -6.6 Positive alginate biosynthesis regulatory protein compare
PP_1025 -1.1 -4.3 2-isopropylmalate synthase compare
PP_5328 -1.1 -1.5 putative phosphate transport system permease protein compare
PP_4060 -1.1 -6.3 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_2324 -1.1 -2.9 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4720 -1.1 -1.9 putative RNA binding protein compare
PP_5236 -1.1 -5.8 conserved protein of unknown function compare
PP_1995 -1.1 -0.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5227 -1.1 -6.1 diaminopimelate decarboxylase compare
PP_1217 -1.1 -3.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3840 -1.1 -1.7 conserved protein of unknown function compare
PP_0393 -1.1 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5015 -1.1 -0.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4699 -1.1 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0289 -1.1 -1.9 Imidazoleglycerol-phosphate dehydratase compare
PP_3603 -1.1 -3.8 Transcriptional regulator, GntR family compare
PP_3946 -1.0 -1.5 HTH-type transcriptional repressor NicR compare
PP_4058 -1.0 -1.0 1,4-alpha-glucan branching enzyme compare
PP_2168 -1.0 -1.4 Transaldolase compare
PP_5146 -1.0 -5.4 RNA pyrophosphohydrolase compare
PP_0340 -1.0 -6.4 Glutamate-ammonia-ligase adenylyltransferase compare
PP_1985 -1.0 -0.7 3-isopropylmalate dehydratase large subunit compare
PP_1216 -1.0 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1621 -1.0 -3.9 Protein-L-isoaspartate O-methyltransferase compare
PP_5035 -1.0 -4.1 Histidine utilization repressor compare
PP_5090 -1.0 -2.7 putative cell division protein compare
PP_2499 -1.0 -1.7 conserved protein of unknown function compare
PP_5143 -1.0 -2.4 conserved membrane protein of unknown function compare
PP_5426 -1.0 -4.8 conserved protein of unknown function compare
PP_0084 -1.0 -4.3 HTH-type transcriptional regulator TrpI compare
PP_0966 -1.0 -0.7 Histidinol dehydrogenase compare
PP_4495 -1.0 -7.0 aromatic amino acid transport protein compare
PP_2121 -1.0 -1.4 putative Lipoprotein compare
PP_0291 -1.0 -2.2 conserved protein of unknown function compare
PP_4532 -1.0 -1.8 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1364 -1.0 -4.8 conserved exported protein of unknown function compare
PP_4480 -1.0 -4.4 arginine N-succinyltransferase, subunit alpha compare
PP_5098 -1.0 -0.7 methionine biosynthesis protein MetW compare
PP_2402 -0.9 -0.9 putative Sensor histidine kinase compare
PP_0420 -0.9 -3.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3519 -0.9 -1.2 putative Lipoprotein compare
PP_0421 -0.9 -2.4 Anthranilate phosphoribosyltransferase compare
PP_4942 -0.9 -2.0 conserved protein of unknown function compare
PP_4943 -0.9 -1.4 putative Glycosyl transferase compare
PP_0834 -0.9 -1.8 Sec translocation complex subunit YajC compare
PP_3511 -0.9 -1.0 Branched-chain-amino-acid aminotransferase compare
PP_4680 -0.9 -1.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1635 -0.9 -1.1 DNA-binding response regulator compare
PP_5086 -0.9 -4.7 putative nuclease (SNase domain protein) compare
PP_1417 -0.9 -3.3 putative Tricarboxylate transport protein TctB conserved
PP_4261 -0.8 -2.2 cation-transporting P-type ATPase compare
PP_0164 -0.8 -3.9 conserved protein of unknown function compare
PP_0852 -0.8 -3.3 Transcriptional regulator, Cro/CI family compare
PP_4994 -0.8 -1.1 conserved protein of unknown function compare
PP_4944 -0.8 -2.3 Carbamoyltransferase compare
PP_0083 -0.8 -0.6 tryptophan synthase beta chain compare
PP_1468 -0.8 -1.7 Tyrosine recombinase XerD compare
PP_2740 -0.8 -2.1 Transcriptional regulator, MerR family compare
PP_0261 -0.8 -2.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0995 -0.8 -3.8 conserved membrane protein of unknown function compare
PP_3052 -0.8 -1.2 conserved protein of unknown function compare
PP_5223 -0.8 -2.9 regulator of nucleotide diphosphokinase compare
PP_2441 -0.8 -1.4 conserved protein of unknown function compare
PP_4546 -0.8 -2.2 ATP-dependent helicase HrpA compare
PP_1898 -0.8 -0.9 MotA/TolQ/ExbB proton channel family protein compare
PP_5475 -0.8 -1.0 conserved protein of unknown function compare
PP_1426 -0.8 -5.3 L-aspartate oxidase compare
PP_1377 -0.8 -3.6 beta-ketoadipyl-CoA thiolase compare
PP_1552 -0.8 -3.1 putative Phage replication protein compare
PP_2375 -0.8 -4.6 cobalamin-dependent methionine synthase compare
PP_1416 -0.8 -3.8 putative Tricarboxylate transport protein TctA conserved
PP_5528 -0.8 -1.1 conserved protein of unknown function compare
PP_4829 -0.8 -1.5 putative precorrin-3B synthase compare
PP_1789 -0.7 -2.6 Hydrolase, haloacid dehalogenase-like family compare
PP_2044 -0.7 -1.5 conserved inner membrane protein of unknown function compare
PP_4362 -0.7 -2.4 conserved protein of unknown function compare
PP_5327 -0.7 -1.7 putative phosphate ABC transporter, permease subunit compare
PP_5628 -0.7 -1.4 conserved protein of unknown function compare
PP_3105 -0.7 -0.8 conserved membrane protein of unknown function compare
PP_3906 -0.7 -2.4 conserved protein of unknown function compare
PP_1074 -0.7 -2.3 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_1268 -0.7 -1.6 putative HtrA suppressor protein sohA compare
PP_0413 -0.7 -5.0 Polyamine ABC transporter, permease protein compare
PP_4354 -0.7 -2.2 flagellar export apparatus subunit compare
PP_3555 -0.7 -2.7 putative Transmembrane sensor compare
PP_4143 -0.7 -2.0 conserved protein of unknown function compare
PP_4593 -0.7 -1.3 conserved protein of unknown function compare
PP_4223 -0.7 -1.9 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1620 -0.7 -4.1 5'(3')-nucleotidase and polyphosphatase compare
PP_2098 -0.7 -4.5 D-alanyl-D-alanine carboxypeptidase compare
PP_2520 -0.7 -1.6 conserved protein of unknown function compare
PP_4952 -0.7 -1.0 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0840 -0.7 -3.0 serine acetyltransferase compare
PP_4517 -0.7 -1.4 conserved protein of unknown function compare
PP_2348 -0.7 -1.9 Sensor histidine kinase compare
PP_0401 -0.7 -1.1 Ribosomal RNA small subunit methyltransferase A compare
PP_2972 -0.7 -1.1 conserved protein of unknown function compare
PP_4389 -0.7 -4.1 Flagellar basal-body rod modification protein FlgD compare
PP_3211 -0.6 -2.0 ABC transporter, ATP-binding protein compare
PP_3198 -0.6 -1.6 Ferredoxin, 2Fe-2S compare
PP_3359 -0.6 -1.8 putative Hydroxycinnamic acid degradation regulator compare
PP_0082 -0.6 -0.4 tryptophan synthase alpha chain compare
PP_1864 -0.6 -2.0 conserved protein of unknown function compare
PP_2328 -0.6 -0.6 Phosphoadenosine phosphosulfate reductase compare
PP_4355 -0.6 -1.9 flagellar export apparatus subunit compare
PP_1454 -0.6 -1.9 conserved protein of unknown function compare
PP_0147 -0.6 -4.1 Citrate transporter conserved
PP_5028 -0.6 -1.7 proline iminopeptidase compare
PP_3892 -0.6 -1.1 conserved protein of unknown function compare
PP_1413 -0.6 -3.4 Uracil-DNA glycosylase compare
PP_5128 -0.6 -1.9 Dihydroxy-acid dehydratase compare
PP_5311 -0.6 -3.6 putative signal transduction protein compare
PP_1048 -0.6 -1.6 putative protein secretion protein for export compare
PP_3233 -0.6 -2.5 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_1862 -0.6 -2.1 conserved membrane protein of unknown function compare
PP_5225 -0.6 -1.1 frataxin compare
PP_1428 -0.6 -0.4 Sigma factor AlgU negative regulatory protein compare
PP_4391 -0.6 -2.4 flagellar basal-body rod protein FlgB compare
PP_3098 -0.6 -1.0 conserved protein of unknown function compare
PP_2433 -0.6 -0.5 conserved protein of unknown function compare
PP_3919 -0.6 -1.7 conserved protein of unknown function compare
PP_4352 -0.6 -4.3 flagellin export apparatus, substrate specificity protein compare
PP_3810 -0.6 -1.3 conserved protein of unknown function compare
PP_2922 -0.6 -1.9 Urea amidolyase-related protein compare
PP_0439 -0.6 -2.0 conserved protein of unknown function compare
PP_1938 -0.6 -1.6 conserved protein of unknown function compare
PP_4356 -0.6 -1.7 Flagellar protein FliO compare
PP_5008 -0.6 -1.0 Poly granule-associated protein compare
PP_3307 -0.6 -0.8 conserved protein of unknown function compare


Specific Phenotypes

For 9 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For mixed carbon source Trisodium citrate dihydrate across organisms