Experiment set47S232 for Pseudomonas putida KT2440

Compare to:

mixed carbon sources Trisodium citrate dihydrate 10 mM and L-Meta-tyrosine 10 mM

200 most important genes:

  gene name fitness t score description  
PP_5104 -5.5 -3.8 thiazole synthase compare
PP_4922 -5.3 -8.8 Phosphomethylpyrimidine synthase compare
PP_4782 -4.6 -3.2 Phosphomethylpyrimidine kinase compare
PP_1418 -4.3 -3.0 putative Tricarboxylate transport protein TctC compare
PP_1420 -4.0 -6.1 Transcriptional regulatory protein tctD compare
PP_1233 -4.0 -2.7 sulfurtransferase compare
PP_1231 -3.5 -2.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -3.4 -2.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1421 -3.3 -6.6 putative Sensor histidine kinase TctE compare
PP_3527 -3.3 -9.2 Transcriptional regulator, TetR family conserved
PP_3951 -3.3 -4.7 3-oxoadipate CoA-transferase subunit A compare
PP_0735 -3.1 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_1079 -3.1 -2.1 Ornithine carbamoyltransferase compare
PP_5303 -2.9 -4.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1734 -2.7 -3.2 Probable septum site-determining protein MinC compare
PP_3312 -2.5 -1.9 putative Heat shock protein compare
PP_0345 -2.5 -3.5 putative Heptose kinase WapP compare
PP_1716 -2.4 -2.3 Transcriptional regulator, Cro/CI family compare
PP_5075 -2.3 -10.4 glutamate synthase (NADPH) beta subunit compare
PP_4937 -2.3 -3.1 toluene tolerance protein compare
PP_5054 -2.3 -1.6 glutaredoxin 3 compare
PP_2899 -2.3 -1.8 conserved exported protein of unknown function compare
PP_4490 -2.3 -6.3 phenylalanine-4-hydroxylase compare
PP_1217 -2.3 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4917 -2.2 -4.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1348 -2.2 -3.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0313 -2.1 -2.3 putative electron transfer flavoprotein beta subunit compare
PP_5076 -2.1 -11.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_0435 -2.1 -6.1 Peptidase, M23/M37 family compare
PP_2306 -2.1 -2.9 conserved exported protein of unknown function compare
PP_3590 -2.0 -5.7 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_5575 -2.0 -1.8 conserved protein of unknown function compare
PP_4696 -2.0 -1.4 Nitrogen regulation protein NR(I) compare
PP_3952 -1.9 -5.8 3-oxoadipate CoA-transferase subunit A compare
PP_4489 -1.9 -7.2 sigma-54 dependent transcriptional regulator compare
PP_4143 -1.9 -3.8 conserved protein of unknown function compare
PP_2001 -1.9 -1.3 O-succinylhomoserine sulfhydrylase compare
PP_4695 -1.8 -8.8 Sensory box histidine kinase compare
PP_1088 -1.8 -1.2 Argininosuccinate synthase compare
PP_0184 -1.8 -1.2 Argininosuccinate lyase compare
PP_1898 -1.8 -1.2 MotA/TolQ/ExbB proton channel family protein compare
PP_4004 -1.7 -2.6 DNA translocase FtsK compare
PP_1866 -1.7 -6.7 Phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5114 -1.7 -2.0 putative adenine methyltransferase compare
PP_4008 -1.7 -2.6 ATP-dependent serine protease compare
PP_4890 -1.6 -1.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_1303 -1.6 -3.9 Sulfate adenylyltransferase subunit 2 compare
PP_1074 -1.5 -2.1 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4824 -1.5 -5.4 Sensor histidine kinase/response regulator compare
PP_3946 -1.5 -1.5 HTH-type transcriptional repressor NicR compare
PP_0339 -1.5 -1.0 Pyruvate dehydrogenase E1 component compare
PP_0422 -1.5 -1.0 Indole-3-glycerol phosphate synthase compare
PP_0417 -1.5 -2.8 Anthranilate synthase component 1 compare
PP_2348 -1.5 -3.0 Sensor histidine kinase compare
PP_2121 -1.4 -1.7 putative Lipoprotein compare
PP_0852 -1.4 -2.6 Transcriptional regulator, Cro/CI family compare
PP_5143 -1.4 -2.3 conserved membrane protein of unknown function compare
PP_1824 -1.4 -1.5 Smr domain protein compare
PP_5097 -1.4 -2.4 homoserine O-acetyltransferase compare
PP_3790 -1.4 -3.8 diaminopimelate epimerase compare
PP_4941 -1.4 -4.0 conserved exported protein of unknown function compare
PP_1672 -1.4 -3.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0978 -1.4 -3.1 conserved protein of unknown function compare
PP_4262 -1.4 -1.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2327 -1.3 -0.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4679 -1.3 -0.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0025 -1.3 -1.1 hypothetical protein compare
PP_5327 -1.3 -2.1 putative phosphate ABC transporter, permease subunit compare
PP_1198 -1.3 -1.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1346 -1.3 -3.0 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4504 -1.3 -1.2 conserved exported protein of unknown function compare
PP_0346 -1.3 -4.3 putative Heptose kinase WapQ compare
PP_2203 -1.3 -2.0 conserved protein of unknown function compare
PP_5546 -1.2 -1.4 conserved protein of unknown function compare
PP_3110 -1.2 -1.5 protein of unknown function compare
PP_0164 -1.2 -3.2 conserved protein of unknown function compare
PP_3924 -1.2 -1.8 conserved protein of unknown function compare
PP_5035 -1.2 -2.7 Histidine utilization repressor compare
PP_1176 -1.2 -1.7 conserved protein of unknown function compare
PP_0965 -1.2 -1.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3603 -1.2 -3.2 Transcriptional regulator, GntR family compare
PP_4642 -1.2 -0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_0967 -1.2 -0.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5028 -1.2 -2.2 proline iminopeptidase compare
PP_0290 -1.2 -0.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0589 -1.2 -4.3 Bcr/CflA family multidrug resistance transporter compare
PP_3766 -1.2 -1.5 Lactoylglutathione lyase compare
PP_3559 -1.1 -2.6 glycine betaine ABC transporter (permease) compare
PP_5185 -1.1 -0.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4621 -1.1 -4.9 Homogentisate 1,2-dioxygenase compare
PP_0420 -1.1 -3.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5202 -1.1 -2.7 putative cell division protein compare
PP_0185 -1.1 -3.4 Positive alginate biosynthesis regulatory protein compare
PP_0393 -1.1 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5227 -1.1 -4.6 diaminopimelate decarboxylase compare
PP_0001 -1.1 -1.3 probable chromosome-partitioning protein compare
PP_4738 -1.1 -1.5 conserved exported protein of unknown function compare
PP_2668 -1.1 -1.9 ABC efflux transporter, ATP-binding protein compare
PP_5198 -1.1 -2.0 conserved protein of unknown function compare
PP_4678 -1.1 -0.8 Ketol-acid reductoisomerase compare
PP_5236 -1.1 -3.9 conserved protein of unknown function compare
PP_3333 -1.1 -2.4 conserved protein of unknown function compare
PP_0406 -1.1 -2.1 Nucleotidyltransferase family protein compare
PP_5448 -1.1 -2.5 conserved protein of unknown function compare
PP_1583 -1.0 -2.4 putative Structural protein P5 compare
PP_4060 -1.0 -5.0 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4268 -1.0 -1.0 nucleoid-associated broad specificity regulator compare
PP_2090 -1.0 -1.8 Uroporphyrinogen-III C-methyltransferase compare
PP_4495 -1.0 -6.6 aromatic amino acid transport protein compare
PP_2304 -1.0 -2.8 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_3048 -1.0 -1.9 conserved protein of unknown function compare
PP_2835 -1.0 -1.6 putative oxidoreductase compare
PP_1834 -1.0 -2.1 conserved protein of unknown function compare
PP_4387 -1.0 -2.0 conserved exported protein of unknown function compare
PP_4018 -1.0 -2.7 Acetyltransferase, GNAT family compare
PP_2884 -1.0 -3.4 XRE family transcriptional regulator compare
PP_0063 -1.0 -2.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3597 -1.0 -2.7 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_4264 -1.0 -3.0 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_0630 -1.0 -0.9 DNA gyrase inhibitor YacG compare
PP_5201 -1.0 -1.5 conserved protein of unknown function, UPF0149 family compare
PP_2681 -1.0 -1.4 coenzyme PQQ synthesis protein D compare
PP_0198 -1.0 -3.1 putative transporter compare
PP_0065 -1.0 -1.8 NAD-binding component of TrK potassium transporter compare
PP_2324 -1.0 -2.4 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5705 -1.0 -1.3 protein of unknown function compare
PP_4913 -1.0 -2.3 conserved protein of unknown function compare
PP_3211 -1.0 -2.4 ABC transporter, ATP-binding protein compare
PP_3726 -1.0 -1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_4212 -1.0 -2.7 pyoverdine biosynthesis related protein compare
PP_0326 -0.9 -3.0 sarcosine oxidase subunit gamma compare
PP_5110 -0.9 -1.6 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1419 -0.9 -2.5 tricarboxylate-specific outer membrane porin compare
PP_1787 -0.9 -2.5 conserved protein of unknown function compare
PP_0484 -0.9 -3.6 transporter of an unknown substrate compare
PP_0273 -0.9 -2.0 conserved protein of unknown function compare
PP_0642 -0.9 -3.0 conserved membrane protein of unknown function compare
PP_1609 -0.9 -1.1 conserved protein of unknown function compare
PP_4098 -0.9 -1.4 UvrABC system protein C compare
PP_3511 -0.9 -0.6 Branched-chain-amino-acid aminotransferase compare
PP_4058 -0.9 -0.6 1,4-alpha-glucan branching enzyme compare
PP_1128 -0.9 -2.2 OmpA family protein compare
PP_4826 -0.9 -3.1 Precorrin-3B C17-methyltransferase compare
PP_4994 -0.9 -1.0 conserved protein of unknown function compare
PP_3522 -0.9 -1.7 conserved protein of unknown function compare
PP_0292 -0.9 -0.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2088 -0.9 -1.7 RNA polymerase sigma factor SigX compare
PP_5295 -0.9 -0.8 conserved protein of unknown function compare
PP_5519 -0.9 -1.4 conserved protein of unknown function of phage origin compare
PP_2388 -0.9 -1.8 Transporter, LysE family compare
PP_0340 -0.9 -5.3 Glutamate-ammonia-ligase adenylyltransferase compare
PP_0421 -0.9 -1.8 Anthranilate phosphoribosyltransferase compare
PP_0084 -0.9 -2.6 HTH-type transcriptional regulator TrpI compare
PP_1763 -0.9 -1.9 putative oxidoreductase compare
PP_1216 -0.9 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0262 -0.9 -1.7 conserved protein of unknown function compare
PP_4671 -0.9 -3.0 conserved exported protein of unknown function compare
PP_5SB -0.8 -2.0 5S ribosomal RNA compare
PP_0276 -0.8 -1.0 Transcriptional regulator, Cro/CI family compare
PP_2074 -0.8 -2.7 Transcriptional regulator, LysR family compare
PP_1416 -0.8 -2.7 putative Tricarboxylate transport protein TctA conserved
PP_2215 -0.8 -1.5 acetyl-CoA acetyltransferase compare
PP_3810 -0.8 -1.4 conserved protein of unknown function compare
PP_2511 -0.8 -2.0 conserved protein of unknown function compare
PP_2032 -0.8 -2.9 putative ATPase compare
PP_4943 -0.8 -1.2 putative Glycosyl transferase compare
PP_4798 -0.8 -3.3 putative Membrane-bound lytic murein transglycosylase compare
PP_4482 -0.8 -1.6 Transcriptional regulator, AraC family compare
PP_0794 -0.8 -1.8 1-phosphofructokinase monomer compare
PP_4133 -0.8 -1.4 Transcriptional regulator-related protein compare
PP_4993 -0.8 -2.0 Glutathione synthetase compare
PP_3487 -0.8 -1.8 conserved exported protein of unknown function compare
PP_0888 -0.8 -1.1 Photosynthetic apparatus regulatory protein RegA compare
PP_1995 -0.8 -0.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4997 -0.8 -1.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1322 -0.8 -1.2 putative Lipoprotein compare
PP_2307 -0.8 -1.7 conserved protein of unknown function compare
PP_1993 -0.8 -4.3 putative motility protein fimV compare
PP_4942 -0.8 -1.3 conserved protein of unknown function compare
PP_3903 -0.8 -1.1 conserved protein of unknown function compare
PP_5520 -0.8 -1.9 conserved protein of unknown function compare
PP_4073 -0.8 -1.4 conserved exported protein of unknown function compare
PP_1054 -0.8 -1.5 Type II secretion pathway protein XcpZ compare
PP_4829 -0.8 -1.5 putative precorrin-3B synthase compare
PP_2745 -0.8 -1.6 Universal stress protein family compare
PP_4237 -0.8 -3.5 periplasmic protein disulfide isomerase compare
PP_5600 -0.8 -1.9 conserved protein of unknown function compare
PP_4391 -0.8 -2.3 flagellar basal-body rod protein FlgB compare
PP_2256 -0.8 -2.1 Transcriptional regulator, Cro/CI family compare
PP_4760 -0.8 -2.4 Alcohol dehydrogenase, zinc-containing compare
PP_1702 -0.8 -2.2 Recombination-associated protein RdgC compare
PP_1860 -0.8 -1.5 Organic hydroperoxide resistance transcriptional regulator compare
PP_4355 -0.8 -1.5 flagellar export apparatus subunit compare
PP_3455 -0.7 -2.1 Multidrug efflux RND membrane fusion protein compare
PP_2098 -0.7 -3.2 D-alanyl-D-alanine carboxypeptidase compare
PP_3036 -0.7 -1.4 conserved protein of unknown function compare
PP_1377 -0.7 -2.4 beta-ketoadipyl-CoA thiolase compare
PP_2878 -0.7 -0.7 conserved protein of unknown function compare
PP_3034 -0.7 -1.5 putative Regulator protein compare
PP_5430 -0.7 -1.6 protein of unknown function compare


Specific Phenotypes

For 9 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For mixed carbon source Trisodium citrate dihydrate across organisms