Experiment set47S228 for Pseudomonas putida KT2440

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mixed carbon sources Trisodium citrate dihydrate 10 mM and 3-Chloro-L-tyrosine 10 mM

200 most important genes:

  gene name fitness t score description  
PP_4922 -4.4 -8.5 Phosphomethylpyrimidine synthase compare
PP_5104 -4.3 -5.9 thiazole synthase compare
PP_4782 -4.1 -2.8 Phosphomethylpyrimidine kinase compare
PP_1420 -4.0 -3.9 Transcriptional regulatory protein tctD compare
PP_4620 -3.7 -7.5 Fumarylacetoacetase compare
PP_0508 -3.6 -4.2 conserved exported protein of unknown function compare
PP_1418 -3.5 -4.1 putative Tricarboxylate transport protein TctC compare
PP_3590 -3.3 -6.3 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0507 -3.1 -6.0 putative ABC efflux transporter, ATP-binding protein conserved
PP_0506 -3.1 -10.8 putative ABC efflux transporter, permease protein conserved
PP_1233 -3.1 -3.0 sulfurtransferase compare
PP_1421 -3.0 -6.7 putative Sensor histidine kinase TctE compare
PP_1231 -3.0 -2.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -2.9 -2.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3790 -2.9 -6.9 diaminopimelate epimerase compare
PP_0735 -2.8 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_0435 -2.7 -1.9 Peptidase, M23/M37 family compare
PP_1733 -2.7 -3.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_1079 -2.5 -1.7 Ornithine carbamoyltransferase compare
PP_4004 -2.4 -4.7 DNA translocase FtsK compare
PP_0063 -2.3 -4.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4699 -2.2 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5333 -2.1 -6.0 conserved exported protein of unknown function conserved
PP_0127 -2.1 -2.8 Thiol:disulfide interchange protein compare
PP_5303 -2.1 -3.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4143 -2.1 -4.2 conserved protein of unknown function compare
PP_4619 -2.1 -6.0 Maleylacetoacetate isomerase conserved
PP_5313 -2.0 -3.3 DNA-binding protein HU-alpha compare
PP_0164 -1.9 -5.3 conserved protein of unknown function compare
PP_4695 -1.9 -7.6 Sensory box histidine kinase compare
PP_5035 -1.9 -5.0 Histidine utilization repressor compare
PP_1938 -1.9 -2.6 conserved protein of unknown function compare
PP_1348 -1.9 -4.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5393 -1.9 -1.8 putative metal-binding chaperone compare
PP_3946 -1.8 -1.7 HTH-type transcriptional repressor NicR compare
PP_4897 -1.8 -3.3 N-acetylmuramoyl-L-alanine amidase compare
PP_2345 -1.7 -2.8 conserved exported protein of unknown function compare
PP_4937 -1.7 -2.5 toluene tolerance protein compare
PP_1713 -1.6 -2.1 Transcriptional regulator PcaQ compare
PP_4793 -1.6 -1.8 conserved protein of unknown function compare
PP_0406 -1.5 -2.3 Nucleotidyltransferase family protein compare
PP_4008 -1.5 -1.0 ATP-dependent serine protease compare
PP_1303 -1.5 -3.3 Sulfate adenylyltransferase subunit 2 compare
PP_4356 -1.5 -2.8 Flagellar protein FliO compare
PP_2098 -1.5 -6.5 D-alanyl-D-alanine carboxypeptidase compare
PP_0261 -1.5 -3.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1734 -1.5 -2.6 Probable septum site-determining protein MinC compare
PP_2322 -1.5 -3.5 Major outer membrane lipoprotein compare
PP_4060 -1.5 -6.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4696 -1.4 -1.0 Nitrogen regulation protein NR(I) compare
PP_1528 -1.4 -1.6 conserved protein of unknown function compare
PP_1419 -1.4 -3.6 tricarboxylate-specific outer membrane porin compare
PP_2001 -1.4 -1.0 O-succinylhomoserine sulfhydrylase compare
PP_4952 -1.4 -1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3080 -1.4 -5.1 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase conserved
PP_5075 -1.4 -7.5 glutamate synthase (NADPH) beta subunit compare
PP_4824 -1.4 -4.1 Sensor histidine kinase/response regulator compare
PP_0001 -1.4 -1.6 probable chromosome-partitioning protein compare
PP_1384 -1.3 -6.0 Probable efflux pump outer membrane protein TtgC compare
PP_3433 -1.3 -6.8 4-hydroxyphenylpyruvate dioxygenase conserved
PP_1224 -1.3 -3.3 periplasmic subunit of the TolQRA transport system compare
PP_1097 -1.3 -1.2 Methionine--tRNA ligase compare
PP_1088 -1.3 -0.9 Argininosuccinate synthase compare
PP_4971 -1.3 -6.1 putative Outer membrane-bound lytic murein transglycolase A compare
PP_2747 -1.3 -1.5 conserved protein of unknown function compare
PP_1548 -1.3 -1.3 conserved protein of unknown function compare
PP_5146 -1.3 -5.0 RNA pyrophosphohydrolase compare
PP_0291 -1.3 -1.7 conserved protein of unknown function compare
PP_4481 -1.3 -3.9 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1898 -1.3 -0.9 MotA/TolQ/ExbB proton channel family protein compare
PP_5076 -1.3 -9.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_0184 -1.2 -0.9 Argininosuccinate lyase compare
PP_1826 -1.2 -2.2 Hydrolase, isochorismatase family compare
PP_1416 -1.2 -5.5 putative Tricarboxylate transport protein TctA conserved
PP_0420 -1.2 -1.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2575 -1.2 -1.9 conserved exported protein of unknown function compare
PP_1045 -1.2 -1.8 Type II secretion pathway protein XcpP compare
PP_0087 -1.2 -2.3 conserved exported protein of unknown function compare
PP_5350 -1.2 -1.6 Transcriptional regulator, RpiR family compare
PP_0025 -1.2 -1.3 hypothetical protein compare
PP_1987 -1.2 -2.3 Methlytransferase, UbiE/COQ5 family compare
PP_3098 -1.2 -1.5 conserved protein of unknown function compare
PP_0505 -1.2 -3.3 conserved protein of unknown function compare
PP_3637 -1.2 -1.5 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0346 -1.1 -4.7 putative Heptose kinase WapQ compare
PP_5145 -1.1 -9.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4835 -1.1 -2.3 conserved exported protein of unknown function compare
PP_5086 -1.1 -5.1 putative nuclease (SNase domain protein) compare
PP_5097 -1.1 -0.8 homoserine O-acetyltransferase compare
PP_0185 -1.1 -4.7 Positive alginate biosynthesis regulatory protein compare
PP_2320 -1.1 -6.3 conserved exported protein of unknown function compare
PP_1215 -1.1 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_4941 -1.1 -3.0 conserved exported protein of unknown function compare
PP_1355 -1.1 -5.3 Muropeptide permease AmpG compare
PP_0852 -1.1 -2.3 Transcriptional regulator, Cro/CI family compare
PP_2928 -1.1 -4.9 Saccharopine dehydrogenase compare
PP_2341 -1.1 -1.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_3649 -1.0 -1.2 Transcriptional regulator, GntR family compare
PP_0683 -1.0 -2.2 conserved protein of unknown function compare
PP_4094 -1.0 -2.2 conserved protein of unknown function compare
PP_5390 -1.0 -2.7 conserved hypothetical protein compare
PP_0138 -1.0 -4.7 conserved membrane protein of unknown function compare
PP_1216 -1.0 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4938 -1.0 -4.6 putative Glycosyl transferase compare
PP_3840 -1.0 -1.4 conserved protein of unknown function compare
PP_1451 -1.0 -3.4 conserved exported protein of unknown function compare
PP_0809 -1.0 -3.8 disulfide bond formation protein B compare
PP_2847 -1.0 -1.2 Urease accessory protein UreJ compare
PP_5198 -1.0 -1.8 conserved protein of unknown function compare
PP_5110 -1.0 -1.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4826 -1.0 -3.4 Precorrin-3B C17-methyltransferase compare
PP_2740 -1.0 -1.9 Transcriptional regulator, MerR family compare
PP_2031 -1.0 -2.0 conserved protein of unknown function compare
PP_2720 -1.0 -1.4 conserved protein of unknown function compare
PP_1736 -1.0 -2.0 conserved protein of unknown function compare
PP_3539 -1.0 -1.6 putative Transcriptional regulator compare
PP_3411 -1.0 -1.5 conserved protein of unknown function compare
PP_1142 -1.0 -1.2 conserved protein of unknown function compare
PP_4613 -1.0 -5.0 outer membrane ferric citrate porin compare
PP_2929 -1.0 -4.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1364 -1.0 -4.0 conserved exported protein of unknown function compare
PP_5227 -1.0 -5.7 diaminopimelate decarboxylase compare
PP_5042 -1.0 -2.4 conserved protein of unknown function compare
PP_2631 -1.0 -1.5 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1304 -0.9 -3.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4798 -0.9 -3.9 putative Membrane-bound lytic murein transglycosylase compare
PP_2999 -0.9 -1.3 Glyoxalase family protein compare
PP_1568 -0.9 -1.3 conserved protein of unknown function compare
PP_4343 -0.9 -2.9 Flagellar biosynthesis protein FlhF compare
PP_1385 -0.9 -7.0 Probable efflux pump membrane transporter TtgB compare
PP_1386 -0.9 -4.7 Probable efflux pump periplasmic linker TtgA compare
PP_1417 -0.9 -2.7 putative Tricarboxylate transport protein TctB conserved
PP_5039 -0.9 -1.8 conserved protein of unknown function compare
PP_1268 -0.9 -1.5 putative HtrA suppressor protein sohA compare
PP_0422 -0.9 -0.6 Indole-3-glycerol phosphate synthase compare
PP_4528 -0.9 -1.7 conserved protein of unknown function compare
PP_0834 -0.9 -1.6 Sec translocation complex subunit YajC compare
PP_0377 -0.9 -1.2 coenzyme PQQ synthesis protein D compare
PP_1415 -0.9 -2.4 putative membrane associated enzyme subunit compare
PP_2023 -0.9 -2.4 Glutathione S-transferase family protein compare
PP_3434 -0.9 -1.6 conserved protein of unknown function compare
PP_4879 -0.9 -2.2 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_1441 -0.9 -2.8 tRNA (cmo5U34)-methyltransferase compare
PP_4504 -0.9 -1.3 conserved exported protein of unknown function compare
PP_5236 -0.9 -4.0 conserved protein of unknown function compare
PP_5327 -0.9 -1.2 putative phosphate ABC transporter, permease subunit compare
PP_2633 -0.9 -1.1 conserved protein of unknown function compare
PP_5508 -0.9 -1.0 conserved protein of unknown function compare
PP_1844 -0.9 -2.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_0937 -0.9 -2.6 endoribonuclease G (RNAse G) compare
PP_2939 -0.9 -2.6 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_3051 -0.8 -2.6 Pyocin R2_PP, tail spike protein compare
PP_3064 -0.8 -1.3 Phage tail protein compare
PP_2907 -0.8 -2.2 DNA-binding response regulator compare
PP_4340 -0.8 -2.4 response regulator for chemotactic signal transduction compare
PP_2304 -0.8 -3.5 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_3447 -0.8 -1.2 conserved membrane protein of unknown function compare
PP_0122 -0.8 -2.0 conserved exported protein of unknown function compare
PP_4722 -0.8 -2.4 Transcription elongation factor GreA compare
PP_1790 -0.8 -1.4 putative Acylneuraminate cytidylyltransferase compare
PP_5289 -0.8 -0.6 Acetylglutamate kinase compare
PP_3359 -0.8 -2.0 putative Hydroxycinnamic acid degradation regulator compare
PP_0995 -0.8 -2.8 conserved membrane protein of unknown function compare
PP_3789 -0.8 -4.3 putative Efflux transporter compare
PP_2327 -0.8 -0.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3531 -0.8 -2.7 conserved exported protein of unknown function compare
PP_5552 -0.8 -1.7 conserved protein of unknown function compare
PP_0951 -0.8 -4.4 Ribosome hibernation promoting factor compare
PP_2137 -0.8 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_4264 -0.8 -3.1 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_4890 -0.8 -0.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_4611 -0.8 -2.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1198 -0.8 -1.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1128 -0.8 -1.7 OmpA family protein compare
PP_3527 -0.8 -4.6 Transcriptional regulator, TetR family conserved
PP_1036 -0.8 -4.0 membrane-bound lytic murein transglycosylase F compare
PP_1621 -0.8 -2.7 Protein-L-isoaspartate O-methyltransferase compare
PP_4820 -0.8 -2.3 tRNA-dihydrouridine synthase B compare
PP_5426 -0.8 -3.2 conserved protein of unknown function compare
PP_1813 -0.8 -1.8 ComEA-related protein compare
PP_5202 -0.8 -1.4 putative cell division protein compare
PP_0065 -0.8 -1.1 NAD-binding component of TrK potassium transporter compare
PP_4268 -0.8 -0.8 nucleoid-associated broad specificity regulator compare
PP_4679 -0.8 -0.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1774 -0.8 -1.8 conserved exported protein of unknown function compare
PP_1271 -0.7 -2.4 putative Multidrug efflux MFS transporter compare
PP_4642 -0.7 -0.8 Cyclic diguanosine monophosphate-binding protein compare
PP_1758 -0.7 -3.3 putative sulfurtransferase containing rhodanese-like domain compare
PP_2976 -0.7 -0.8 putative transposase compare
PP_3821 -0.7 -3.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5028 -0.7 -1.2 proline iminopeptidase compare
PP_4196 -0.7 -1.6 conserved exported protein of unknown function compare
PP_2540 -0.7 -2.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2414 -0.7 -1.2 conserved exported protein of unknown function compare
PP_3663 -0.7 -3.7 GGDEF domain protein compare
PP_4197 -0.7 -4.3 Transcriptional regulator, GntR family conserved
PP_0914 -0.7 -4.0 GGDEF domain protein compare
PP_3603 -0.7 -2.3 Transcriptional regulator, GntR family compare
PP_2537 -0.7 -2.7 conserved protein of unknown function compare
PP_5247 -0.7 -2.4 conserved protein of unknown function compare


Specific Phenotypes

For 11 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For mixed carbon source Trisodium citrate dihydrate across organisms