Experiment set47S226 for Pseudomonas putida KT2440

Compare to:

mixed carbon sources Trisodium citrate dihydrate 10 mM and 3-Chloro-L-tyrosine 10 mM

200 most important genes:

  gene name fitness t score description  
PP_5104 -4.7 -3.2 thiazole synthase compare
PP_4620 -4.1 -4.9 Fumarylacetoacetase compare
PP_4922 -3.7 -8.9 Phosphomethylpyrimidine synthase compare
PP_1420 -3.6 -3.5 Transcriptional regulatory protein tctD compare
PP_3590 -3.1 -6.0 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1233 -3.1 -2.2 sulfurtransferase compare
PP_4782 -3.1 -3.7 Phosphomethylpyrimidine kinase compare
PP_1418 -3.0 -4.0 putative Tricarboxylate transport protein TctC compare
PP_0508 -2.8 -3.8 conserved exported protein of unknown function compare
PP_3105 -2.8 -2.4 conserved membrane protein of unknown function compare
PP_1421 -2.7 -6.3 putative Sensor histidine kinase TctE compare
PP_5303 -2.6 -3.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0735 -2.6 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_0063 -2.5 -4.5 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0787 -2.5 -1.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4619 -2.4 -6.6 Maleylacetoacetate isomerase conserved
PP_0506 -2.4 -9.6 putative ABC efflux transporter, permease protein conserved
PP_0507 -2.3 -5.1 putative ABC efflux transporter, ATP-binding protein conserved
PP_5202 -2.2 -3.4 putative cell division protein compare
PP_1079 -2.2 -1.5 Ornithine carbamoyltransferase compare
PP_1734 -2.2 -2.1 Probable septum site-determining protein MinC compare
PP_0435 -2.2 -2.6 Peptidase, M23/M37 family compare
PP_1231 -2.1 -2.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1366 -2.1 -2.0 Transcriptional regulator MvaT, P16 subunit compare
PP_5333 -1.9 -5.4 conserved exported protein of unknown function conserved
PP_5035 -1.9 -4.6 Histidine utilization repressor compare
PP_5110 -1.9 -2.6 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1224 -1.9 -3.1 periplasmic subunit of the TolQRA transport system compare
PP_1417 -1.9 -4.3 putative Tricarboxylate transport protein TctB conserved
PP_0048 -1.9 -1.8 conserved protein of unknown function compare
PP_4555 -1.8 -2.7 conserved protein of unknown function compare
PP_3790 -1.8 -5.4 diaminopimelate epimerase compare
PP_0164 -1.7 -4.5 conserved protein of unknown function compare
PP_1038 -1.7 -2.3 conserved protein of unknown function compare
PP_5453 -1.7 -2.3 conserved protein of unknown function compare
PP_0261 -1.7 -3.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1635 -1.7 -1.5 DNA-binding response regulator compare
PP_2403 -1.6 -1.9 Chemotaxis protein CheY compare
PP_4695 -1.6 -7.0 Sensory box histidine kinase compare
PP_4143 -1.6 -3.5 conserved protein of unknown function compare
PP_3946 -1.6 -1.5 HTH-type transcriptional repressor NicR compare
PP_3433 -1.6 -7.2 4-hydroxyphenylpyruvate dioxygenase conserved
PP_3080 -1.5 -5.2 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase conserved
PP_2883 -1.5 -1.4 conserved protein of unknown function compare
PP_0630 -1.5 -1.4 DNA gyrase inhibitor YacG compare
PP_5146 -1.5 -4.9 RNA pyrophosphohydrolase compare
PP_0962 -1.4 -1.9 toluene-tolerance protein compare
PP_1416 -1.4 -5.5 putative Tricarboxylate transport protein TctA conserved
PP_4699 -1.4 -1.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0852 -1.4 -2.9 Transcriptional regulator, Cro/CI family compare
PP_1367 -1.4 -4.7 formyltetrahydrofolate hydrolase compare
PP_0185 -1.4 -5.9 Positive alginate biosynthesis regulatory protein compare
PP_4937 -1.4 -2.1 toluene tolerance protein compare
PP_4824 -1.4 -3.7 Sensor histidine kinase/response regulator compare
PP_3730 -1.4 -2.4 Transcriptional regulatory protein AruR compare
PP_3449 -1.3 -2.2 conserved exported protein of unknown function compare
PP_2070 -1.3 -2.1 Transcriptional regulator, AraC family compare
PP_5075 -1.2 -7.4 glutamate synthase (NADPH) beta subunit compare
PP_1439 -1.2 -1.4 conserved exported protein of unknown function compare
PP_1348 -1.2 -2.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2098 -1.2 -5.4 D-alanyl-D-alanine carboxypeptidase compare
PP_0834 -1.2 -1.7 Sec translocation complex subunit YajC compare
PP_4681 -1.2 -2.4 conserved protein of unknown function compare
PP_0232 -1.2 -1.3 ATP-binding taurine transporter subunit compare
PP_3359 -1.2 -2.4 putative Hydroxycinnamic acid degradation regulator compare
PP_1386 -1.2 -5.4 Probable efflux pump periplasmic linker TtgA compare
PP_1419 -1.2 -3.5 tricarboxylate-specific outer membrane porin compare
PP_4897 -1.2 -2.2 N-acetylmuramoyl-L-alanine amidase compare
PP_4008 -1.1 -0.8 ATP-dependent serine protease compare
PP_3759 -1.1 -3.4 Methylesterase, CheB-like compare
PP_5001 -1.1 -2.3 protease HslVU, ATPase component compare
PP_4060 -1.1 -5.3 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_5145 -1.1 -9.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4696 -1.1 -0.8 Nitrogen regulation protein NR(I) compare
PP_2720 -1.1 -1.5 conserved protein of unknown function compare
PP_5674 -1.1 -2.1 conserved protein of unknown function compare
PP_4971 -1.1 -5.5 putative Outer membrane-bound lytic murein transglycolase A compare
PP_0978 -1.1 -1.0 conserved protein of unknown function compare
PP_3903 -1.1 -1.3 conserved protein of unknown function compare
PP_4566 -1.1 -4.0 putative drug/metabolite transporter compare
PP_0345 -1.1 -2.2 putative Heptose kinase WapP compare
PP_0346 -1.1 -4.4 putative Heptose kinase WapQ compare
PP_5076 -1.1 -8.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_0809 -1.0 -3.6 disulfide bond formation protein B compare
PP_3480 -1.0 -2.5 conserved protein of unknown function compare
PP_4798 -1.0 -4.7 putative Membrane-bound lytic murein transglycosylase compare
PP_1733 -1.0 -2.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_5571 -1.0 -1.2 conserved protein of unknown function compare
PP_0951 -1.0 -4.2 Ribosome hibernation promoting factor compare
PP_1441 -1.0 -2.9 tRNA (cmo5U34)-methyltransferase compare
PP_0138 -1.0 -4.3 conserved membrane protein of unknown function compare
PP_5426 -1.0 -4.0 conserved protein of unknown function compare
PP_2304 -1.0 -3.7 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_1384 -1.0 -3.6 Probable efflux pump outer membrane protein TtgC compare
PP_2001 -1.0 -1.0 O-succinylhomoserine sulfhydrylase compare
PP_1770 -1.0 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4226 -1.0 -2.3 conserved protein of unknown function compare
PP_2307 -1.0 -1.5 conserved protein of unknown function compare
PP_4364 -1.0 -2.1 putative Anti-sigma F factor antagonist compare
PP_0420 -1.0 -1.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5519 -1.0 -2.4 conserved protein of unknown function of phage origin compare
PP_5203 -1.0 -3.7 5-formyltetrahydrofolate cyclo-ligase compare
PP_4910 -1.0 -2.1 conserved protein of unknown function compare
PP_1088 -1.0 -0.7 Argininosuccinate synthase compare
PP_2928 -1.0 -4.4 Saccharopine dehydrogenase compare
PP_5229 -0.9 -2.1 conserved protein of unknown function compare
PP_4722 -0.9 -2.5 Transcription elongation factor GreA compare
PP_1898 -0.9 -0.6 MotA/TolQ/ExbB proton channel family protein compare
PP_3892 -0.9 -1.3 conserved protein of unknown function compare
PP_4538 -0.9 -3.3 FMN-dependent NADH-azoreductase 2 compare
PP_2929 -0.9 -3.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0122 -0.9 -2.1 conserved exported protein of unknown function compare
PP_4952 -0.9 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0022 -0.9 -1.0 hypothetical protein compare
PP_1131 -0.9 -2.2 outer membrane lipoprotein compare
PP_2504 -0.9 -1.7 putative tautomerase K2 compare
PP_4264 -0.9 -3.1 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1385 -0.9 -6.0 Probable efflux pump membrane transporter TtgB compare
PP_0566 -0.9 -1.1 translation-related factor compare
PP_4701 -0.9 -0.8 glucose-6-phosphate isomerase compare
PP_2291 -0.9 -2.0 conserved protein of unknown function compare
PP_4941 -0.9 -2.4 conserved exported protein of unknown function compare
PP_0593 -0.9 -0.8 putative ribosome-binding factor compare
PP_0184 -0.9 -0.6 Argininosuccinate lyase compare
PP_0307 -0.9 -1.6 conserved exported protein of unknown function compare
PP_1142 -0.9 -1.0 conserved protein of unknown function compare
PP_4329 -0.9 -1.8 FlhB domain protein compare
PP_4011 -0.9 -6.2 isocitrate dehydrogenase, NADP(+)-specific compare
PP_1304 -0.9 -2.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1714 -0.9 -3.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_1062 -0.9 -1.9 MutT/nudix family protein compare
PP_3332 -0.9 -1.7 putative cytochrome c-type protein compare
PP_2878 -0.9 -1.7 conserved protein of unknown function compare
PP_0090 -0.8 -2.4 conserved exported protein of unknown function compare
PP_1355 -0.8 -4.2 Muropeptide permease AmpG compare
PP_4392 -0.8 -3.7 chemotaxis protein methyltransferase compare
PP_2306 -0.8 -2.0 conserved exported protein of unknown function compare
PP_2868 -0.8 -3.3 Transcriptional regulator, Cro/CI family compare
PP_0406 -0.8 -1.4 Nucleotidyltransferase family protein compare
PP_5327 -0.8 -0.6 putative phosphate ABC transporter, permease subunit compare
PP_1036 -0.8 -4.6 membrane-bound lytic murein transglycosylase F compare
PP_2136 -0.8 -2.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_3312 -0.8 -1.2 putative Heat shock protein compare
PP_0587 -0.8 -3.2 conserved exported protein of unknown function compare
PP_5200 -0.8 -4.3 proline aminopeptidase P II compare
PP_0984 -0.8 -1.9 conserved membrane protein of unknown function compare
PP_5097 -0.8 -0.6 homoserine O-acetyltransferase compare
PP_1440 -0.8 -2.2 tRNA (mo5U34)-methyltransferase compare
PP_3603 -0.8 -2.3 Transcriptional regulator, GntR family compare
PP_4197 -0.8 -4.4 Transcriptional regulator, GntR family conserved
PP_4138 -0.8 -2.7 Chromate reductase compare
PP_2345 -0.8 -1.6 conserved exported protein of unknown function compare
PP_2005 -0.8 -3.0 conserved exported protein of unknown function compare
PP_1041 -0.8 -1.4 twin arginine protein export complex subunit compare
PP_4481 -0.8 -2.7 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1829 -0.8 -1.4 Hydrolase, alpha/beta fold family compare
PP_2217 -0.8 -1.1 enoyl-CoA hydratase compare
PP_5483 -0.8 -1.0 conserved protein of unknown function compare
PP_1871 -0.8 -2.6 Protease HtpX compare
PP_2320 -0.8 -3.7 conserved exported protein of unknown function compare
PP_5274 -0.8 -1.3 conserved protein of unknown function compare
PP_3239 -0.8 -1.2 putative cointegrate resolution protein T Tn4652 compare
PP_5236 -0.8 -3.4 conserved protein of unknown function compare
PP_2511 -0.8 -1.7 conserved protein of unknown function compare
PP_5080 -0.7 -2.5 type 4 pili biogenesis protein compare
PP_2348 -0.7 -1.6 Sensor histidine kinase compare
PP_4004 -0.7 -2.1 DNA translocase FtsK compare
PP_4890 -0.7 -0.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_3333 -0.7 -1.9 conserved protein of unknown function compare
PP_4936 -0.7 -3.1 O-antigen polymerase compare
PP_2028 -0.7 -2.5 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5448 -0.7 -1.9 conserved protein of unknown function compare
PP_1826 -0.7 -1.2 Hydrolase, isochorismatase family compare
PP_1364 -0.7 -3.0 conserved exported protein of unknown function compare
PP_3051 -0.7 -1.5 Pyocin R2_PP, tail spike protein compare
PP_4787 -0.7 -1.5 putative protein with nucleoside triphosphate hydrolase domain compare
PP_0887 -0.7 -3.2 Sensor histidine kinase compare
PP_0391 -0.7 -2.4 Glycerol-3-phosphate acyltransferase compare
PP_1670 -0.7 -4.8 putative Lipoprotein compare
PP_0683 -0.7 -1.6 conserved protein of unknown function compare
PP_5381 -0.7 -1.8 hypothetical protein compare
PP_1176 -0.7 -1.2 conserved protein of unknown function compare
PP_3901 -0.7 -2.2 conserved protein of unknown function compare
PP_1445 -0.7 -4.2 carbohydrate-selective porin compare
PP_1300 -0.7 -1.8 putative amino acid ABC transporter - ATP-binding subunit compare
PP_2027 -0.7 -2.8 conserved exported protein of unknown function compare
PP_4147 -0.7 -4.0 microcin C transporter - periplasmic binding protein compare
PP_3258 -0.7 -1.2 conserved protein of unknown function compare
PP_4109 -0.7 -1.4 conserved protein of unknown function compare
PP_0666 -0.7 -1.9 conserved protein of unknown function compare
PP_1736 -0.7 -1.7 conserved protein of unknown function compare
PP_2326 -0.7 -2.9 Universal stress protein compare
PP_5533 -0.7 -1.0 conserved protein of unknown function compare
PP_1451 -0.7 -1.8 conserved exported protein of unknown function compare
PP_5223 -0.7 -1.5 regulator of nucleotide diphosphokinase compare
PP_5748 -0.7 -0.7 cytochrome c heme lyase subunit compare
PP_0905 -0.7 -1.0 conserved exported protein of unknown function compare
PP_1426 -0.7 -3.8 L-aspartate oxidase compare
PP_1621 -0.6 -1.9 Protein-L-isoaspartate O-methyltransferase compare
PP_5528 -0.6 -1.0 conserved protein of unknown function compare


Specific Phenotypes

For 10 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For mixed carbon source Trisodium citrate dihydrate across organisms