Experiment set47S222 for Pseudomonas putida KT2440

Compare to:

mixed carbon sources Trisodium citrate dihydrate 10 mM and 4-azido-L-phenylalanine 10 mM

200 most important genes:

  gene name fitness t score description  
PP_4197 -4.9 -6.7 Transcriptional regulator, GntR family conserved
PP_5104 -4.8 -3.3 thiazole synthase compare
PP_4922 -4.6 -7.8 Phosphomethylpyrimidine synthase compare
PP_2868 -4.5 -5.3 Transcriptional regulator, Cro/CI family compare
PP_1417 -4.0 -4.8 putative Tricarboxylate transport protein TctB conserved
PP_1420 -4.0 -2.8 Transcriptional regulatory protein tctD compare
PP_4782 -4.0 -2.7 Phosphomethylpyrimidine kinase compare
PP_1416 -3.8 -8.0 putative Tricarboxylate transport protein TctA conserved
PP_1421 -3.7 -5.7 putative Sensor histidine kinase TctE compare
PP_3527 -3.6 -10.4 Transcriptional regulator, TetR family conserved
PP_1418 -3.5 -3.4 putative Tricarboxylate transport protein TctC compare
PP_4143 -3.4 -4.7 conserved protein of unknown function compare
PP_1233 -3.3 -2.3 sulfurtransferase compare
PP_1231 -2.8 -1.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1826 -2.8 -2.7 Hydrolase, isochorismatase family compare
PP_4767 -2.8 -9.1 amino acid exporter for phenylalanine, threonine compare
PP_5035 -2.7 -5.4 Histidine utilization repressor compare
PP_0735 -2.7 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_1142 -2.6 -2.0 conserved protein of unknown function compare
PP_5303 -2.4 -3.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1079 -2.4 -1.7 Ornithine carbamoyltransferase compare
PP_3098 -2.3 -2.2 conserved protein of unknown function compare
PP_4060 -2.2 -7.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0787 -2.2 -2.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2136 -2.2 -4.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_3590 -2.1 -6.2 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1348 -2.0 -4.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0435 -1.9 -4.0 Peptidase, M23/M37 family compare
PP_3952 -1.9 -7.4 3-oxoadipate CoA-transferase subunit A compare
PP_0880 -1.8 -3.8 dipeptide ABC transporter - putative membrane subunit compare
PP_0261 -1.8 -3.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4937 -1.7 -2.3 toluene tolerance protein compare
PP_2928 -1.7 -6.6 Saccharopine dehydrogenase compare
PP_3080 -1.7 -5.7 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase conserved
PP_0406 -1.7 -2.2 Nucleotidyltransferase family protein compare
PP_2326 -1.6 -4.7 Universal stress protein compare
PP_1366 -1.6 -1.9 Transcriptional regulator MvaT, P16 subunit compare
PP_0643 -1.6 -2.5 protein of unknown function compare
PP_0063 -1.6 -4.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2253 -1.6 -2.3 Transcriptional regulator, GntR family compare
PP_2929 -1.5 -5.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1377 -1.5 -4.6 beta-ketoadipyl-CoA thiolase compare
PP_3790 -1.5 -5.1 diaminopimelate epimerase compare
PP_4004 -1.5 -3.6 DNA translocase FtsK compare
PP_5486 -1.4 -1.6 conserved protein of unknown function compare
PP_3951 -1.4 -4.6 3-oxoadipate CoA-transferase subunit A compare
PP_5202 -1.4 -2.6 putative cell division protein compare
PP_1733 -1.4 -2.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_4355 -1.4 -2.9 flagellar export apparatus subunit compare
PP_0185 -1.4 -6.0 Positive alginate biosynthesis regulatory protein compare
PP_0962 -1.3 -2.0 toluene-tolerance protein compare
PP_1164 -1.3 -2.4 Transcriptional regulator, LysR family compare
PP_5640 -1.3 -2.3 conserved protein of unknown function compare
PP_1871 -1.3 -3.8 Protease HtpX compare
PP_1198 -1.3 -2.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4696 -1.3 -0.9 Nitrogen regulation protein NR(I) compare
PP_4824 -1.3 -4.1 Sensor histidine kinase/response regulator compare
PP_0841 -1.3 -2.7 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_1426 -1.3 -7.2 L-aspartate oxidase compare
PP_2820 -1.3 -2.8 HTH-type transcriptional regulator nfxB compare
PP_2345 -1.3 -2.4 conserved exported protein of unknown function compare
PP_2001 -1.3 -0.9 O-succinylhomoserine sulfhydrylase compare
PP_3541 -1.3 -2.5 Transporter, MgtC family compare
PP_0878 -1.3 -4.3 dipeptide ABC transporter, binding subunit compare
PP_5426 -1.2 -4.8 conserved protein of unknown function compare
PP_0995 -1.2 -4.3 conserved membrane protein of unknown function compare
PP_4008 -1.2 -1.4 ATP-dependent serine protease compare
PP_1215 -1.2 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_0630 -1.2 -1.3 DNA gyrase inhibitor YacG compare
PP_5007 -1.2 -1.6 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5748 -1.2 -1.1 cytochrome c heme lyase subunit compare
PP_4695 -1.2 -6.0 Sensory box histidine kinase compare
PP_1216 -1.2 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0164 -1.2 -4.1 conserved protein of unknown function compare
PP_4685 -1.2 -3.8 conserved protein of unknown function compare
PP_0846 -1.2 -0.8 DnaK-like molecular chaperone specific for IscU compare
PP_4699 -1.2 -2.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5075 -1.2 -7.3 glutamate synthase (NADPH) beta subunit compare
PP_5345 -1.1 -3.8 Acetyltransferase, GNAT family compare
PP_1734 -1.1 -2.4 Probable septum site-determining protein MinC compare
PP_4223 -1.1 -2.3 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1088 -1.1 -0.8 Argininosuccinate synthase compare
PP_5090 -1.1 -2.1 putative cell division protein compare
PP_3258 -1.1 -1.8 conserved protein of unknown function compare
PP_0951 -1.1 -5.7 Ribosome hibernation promoting factor compare
PP_0346 -1.1 -4.1 putative Heptose kinase WapQ compare
PP_4820 -1.1 -3.6 tRNA-dihydrouridine synthase B compare
PP_1224 -1.1 -2.6 periplasmic subunit of the TolQRA transport system compare
PP_5456 -1.1 -1.6 conserved protein of unknown function compare
PP_4136 -1.1 -1.2 Transcriptional regulator, LuxR family compare
PP_2031 -1.1 -2.4 conserved protein of unknown function compare
PP_2378 -1.1 -0.7 Fe/S biogenesis protein NfuA compare
PP_2348 -1.0 -2.6 Sensor histidine kinase compare
PP_0152 -1.0 -1.8 conserved exported protein of unknown function compare
PP_3833 -1.0 -2.3 Response regulator compare
PP_1364 -1.0 -4.3 conserved exported protein of unknown function compare
PP_3365 -1.0 -1.1 Acetolactate synthase compare
PP_0184 -1.0 -0.7 Argininosuccinate lyase compare
PP_5236 -1.0 -4.5 conserved protein of unknown function compare
PP_4264 -1.0 -3.6 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1025 -1.0 -2.4 2-isopropylmalate synthase compare
PP_4480 -1.0 -3.5 arginine N-succinyltransferase, subunit alpha compare
PP_1381 -1.0 -1.3 4-carboxymuconolactone decarboxylase compare
PP_3637 -1.0 -1.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0358 -1.0 -5.5 conserved membrane protein of unknown function conserved
PP_4503 -1.0 -2.4 DNA-binding response regulator compare
PP_4952 -1.0 -1.0 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4011 -1.0 -6.9 isocitrate dehydrogenase, NADP(+)-specific compare
PP_4971 -1.0 -4.7 putative Outer membrane-bound lytic murein transglycolase A compare
PP_0362 -0.9 -5.4 Biotin synthase compare
PP_1445 -0.9 -5.3 carbohydrate-selective porin compare
PP_4094 -0.9 -2.1 conserved protein of unknown function compare
PP_4890 -0.9 -0.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_3971 -0.9 -1.5 conserved protein of unknown function compare
PP_1097 -0.9 -1.0 Methionine--tRNA ligase compare
PP_1051 -0.9 -2.1 Type II secretion pathway protein XcpV compare
PP_0413 -0.9 -5.6 Polyamine ABC transporter, permease protein compare
PP_5313 -0.9 -1.9 DNA-binding protein HU-alpha compare
PP_5146 -0.9 -3.8 RNA pyrophosphohydrolase compare
PP_2650 -0.9 -1.7 putative 4-hydroxybutyrate dehydrogenase compare
PP_1419 -0.9 -2.1 tricarboxylate-specific outer membrane porin compare
PP_3522 -0.9 -1.4 conserved protein of unknown function compare
PP_1770 -0.9 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5097 -0.9 -1.0 homoserine O-acetyltransferase compare
PP_2693 -0.9 -3.1 putative Dipeptidase compare
PP_0879 -0.9 -2.9 dipeptide ABC transporter - putative ATP binding subunit compare
PP_0508 -0.9 -1.6 conserved exported protein of unknown function compare
PP_2510 -0.9 -1.1 conserved protein of unknown function compare
PP_3312 -0.9 -0.9 putative Heat shock protein compare
PP_0122 -0.9 -2.0 conserved exported protein of unknown function compare
PP_2324 -0.8 -2.3 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4196 -0.8 -1.7 conserved exported protein of unknown function compare
PP_0116 -0.8 -2.7 putative lipoprotein compare
PP_2203 -0.8 -1.6 conserved protein of unknown function compare
PP_5617 -0.8 -2.2 conserved protein of unknown function compare
PP_5295 -0.8 -1.2 conserved protein of unknown function compare
PP_1739 -0.8 -2.2 conserved membrane protein of unknown function compare
PP_0979 -0.8 -1.7 DNA polymerase III subunit chi compare
PP_3773 -0.8 -2.1 conserved protein of unknown function compare
PP_2145 -0.8 -1.4 beta-N-acetylglucosaminidase compare
PP_5110 -0.8 -1.3 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4285 -0.8 -2.3 5-hydroxyisourate hydrolase compare
PP_1041 -0.8 -1.5 twin arginine protein export complex subunit compare
PP_3064 -0.8 -1.9 Phage tail protein compare
PP_1697 -0.8 -1.3 transcriptional regulator, GntR family compare
PP_4505 -0.8 -2.6 Sensor histidine kinase compare
PP_5106 -0.8 -1.9 conserved inner membrane protein compare
PP_1217 -0.8 -1.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2302 -0.8 -1.8 DNA-binding, ATP-dependent protease compare
PP_3776 -0.8 -4.4 putative permease (RarD protein) compare
PP_4098 -0.8 -1.0 UvrABC system protein C compare
PP_5621 -0.8 -1.3 protein of unknown function compare
PP_0246 -0.7 -1.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_3892 -0.7 -1.2 conserved protein of unknown function compare
PP_0339 -0.7 -0.5 Pyruvate dehydrogenase E1 component compare
PP_2090 -0.7 -2.2 Uroporphyrinogen-III C-methyltransferase compare
PP_1374 -0.7 -1.9 conserved protein of unknown function compare
PP_2327 -0.7 -0.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0422 -0.7 -0.5 Indole-3-glycerol phosphate synthase compare
PP_3906 -0.7 -1.6 conserved protein of unknown function compare
PP_3555 -0.7 -2.4 putative Transmembrane sensor compare
PP_4613 -0.7 -4.3 outer membrane ferric citrate porin compare
PP_1763 -0.7 -1.5 putative oxidoreductase compare
PP_1304 -0.7 -2.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3759 -0.7 -3.1 Methylesterase, CheB-like compare
PP_4268 -0.7 -0.8 nucleoid-associated broad specificity regulator compare
PP_5028 -0.7 -1.1 proline iminopeptidase compare
PP_4332 -0.7 -2.5 Chemotaxis protein CheW compare
PP_5705 -0.7 -1.3 protein of unknown function compare
PP_2472 -0.7 -2.5 putative transcriptional regulator, MerR family compare
PP_2433 -0.7 -0.5 conserved protein of unknown function compare
PP_1387 -0.7 -2.2 Probable HTH-type transcriptional regulator TtgR compare
PP_2857 -0.7 -1.4 conserved exported protein of unknown function compare
PP_4556 -0.7 -2.1 conserved protein of unknown function compare
PP_4943 -0.7 -0.9 putative Glycosyl transferase compare
PP_3307 -0.7 -1.1 conserved protein of unknown function compare
PP_4681 -0.7 -1.8 conserved protein of unknown function compare
PP_2070 -0.7 -1.4 Transcriptional regulator, AraC family compare
PP_2950 -0.7 -2.3 conserved protein of unknown function compare
PP_2497 -0.7 -1.3 conserved protein of unknown function compare
PP_0003 -0.7 -1.5 16S RNA methyltransferase compare
PP_0147 -0.7 -3.8 Citrate transporter conserved
PP_3935 -0.7 -2.2 conserved protein of unknown function compare
PP_4555 -0.7 -1.5 conserved protein of unknown function compare
PP_4611 -0.7 -2.6 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4722 -0.7 -1.9 Transcription elongation factor GreA compare
PP_2695 -0.7 -1.9 Transcriptional regulator, LysR family compare
PP_3603 -0.7 -2.2 Transcriptional regulator, GntR family compare
PP_1309 -0.7 -2.7 conserved exported protein of unknown function compare
PP_2137 -0.7 -1.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_0507 -0.7 -2.8 putative ABC efflux transporter, ATP-binding protein conserved
PP_0248 -0.7 -3.7 Probable alpha-L-glutamate ligase compare
PP_5582 -0.7 -1.0 conserved protein of unknown function compare
PP_4846 -0.7 -2.2 L-amino acid N-acyltransferase compare
PP_0241 -0.7 -1.3 Transporter compare
PP_3883 -0.6 -1.6 putative Phage holin compare
PP_5628 -0.6 -1.7 conserved protein of unknown function compare
PP_1355 -0.6 -3.5 Muropeptide permease AmpG compare
PP_4383 -0.6 -2.3 Flagellar P-ring protein compare
PP_2304 -0.6 -2.8 putative Peptidyl-prolyl cis-trans isomerase D compare


Specific Phenotypes

For 13 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For mixed carbon source Trisodium citrate dihydrate across organisms