Experiment set47S221 for Pseudomonas putida KT2440

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mixed carbon sources Trisodium citrate dihydrate 10 mM and 4-azido-L-phenylalanine 10 mM

200 most important genes:

  gene name fitness t score description  
PP_4197 -4.4 -7.4 Transcriptional regulator, GntR family conserved
PP_4922 -4.3 -7.2 Phosphomethylpyrimidine synthase compare
PP_5104 -4.2 -4.9 thiazole synthase compare
PP_2868 -4.0 -5.5 Transcriptional regulator, Cro/CI family compare
PP_4782 -3.7 -2.6 Phosphomethylpyrimidine kinase compare
PP_1420 -3.7 -2.6 Transcriptional regulatory protein tctD compare
PP_4767 -3.4 -8.3 amino acid exporter for phenylalanine, threonine compare
PP_1416 -3.4 -7.5 putative Tricarboxylate transport protein TctA conserved
PP_1418 -3.3 -3.2 putative Tricarboxylate transport protein TctC compare
PP_3590 -3.2 -5.8 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4143 -3.1 -4.2 conserved protein of unknown function compare
PP_1233 -3.0 -2.1 sulfurtransferase compare
PP_3527 -3.0 -9.5 Transcriptional regulator, TetR family conserved
PP_1421 -2.9 -6.2 putative Sensor histidine kinase TctE compare
PP_5303 -2.7 -3.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1348 -2.6 -5.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1231 -2.6 -1.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1417 -2.5 -4.8 putative Tricarboxylate transport protein TctB conserved
PP_0735 -2.5 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_0787 -2.4 -1.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1142 -2.4 -1.9 conserved protein of unknown function compare
PP_5035 -2.3 -4.8 Histidine utilization repressor compare
PP_0185 -2.3 -7.6 Positive alginate biosynthesis regulatory protein compare
PP_2029 -2.2 -3.3 von Willebrand factor type A domain protein compare
PP_1079 -2.2 -1.5 Ornithine carbamoyltransferase compare
PP_1826 -2.0 -2.0 Hydrolase, isochorismatase family compare
PP_4199 -1.9 -1.5 putative Lipoprotein compare
PP_3555 -1.9 -5.0 putative Transmembrane sensor compare
PP_4937 -1.9 -1.8 toluene tolerance protein compare
PP_3892 -1.8 -2.0 conserved protein of unknown function compare
PP_0962 -1.8 -2.1 toluene-tolerance protein compare
PP_4247 -1.8 -2.1 Exonuclease compare
PP_2442 -1.8 -1.9 conserved protein of unknown function, DUF480 family compare
PP_5475 -1.7 -1.8 conserved protein of unknown function compare
PP_2928 -1.7 -6.4 Saccharopine dehydrogenase compare
PP_0346 -1.7 -5.1 putative Heptose kinase WapQ compare
PP_4060 -1.6 -6.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_3946 -1.6 -1.5 HTH-type transcriptional repressor NicR compare
PP_2929 -1.6 -5.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1366 -1.6 -1.8 Transcriptional regulator MvaT, P16 subunit compare
PP_1513 -1.5 -2.5 Ribosomal RNA small subunit methyltransferase J compare
PP_0261 -1.5 -3.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4824 -1.5 -3.5 Sensor histidine kinase/response regulator compare
PP_4505 -1.5 -4.6 Sensor histidine kinase compare
PP_1377 -1.5 -4.8 beta-ketoadipyl-CoA thiolase compare
PP_3080 -1.5 -5.1 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase conserved
PP_3790 -1.5 -4.8 diaminopimelate epimerase compare
PP_3952 -1.5 -6.1 3-oxoadipate CoA-transferase subunit A compare
PP_1216 -1.4 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4004 -1.4 -3.0 DNA translocase FtsK compare
PP_0995 -1.4 -4.5 conserved membrane protein of unknown function compare
PP_4695 -1.4 -6.2 Sensory box histidine kinase compare
PP_1419 -1.4 -3.3 tricarboxylate-specific outer membrane porin compare
PP_3951 -1.4 -3.8 3-oxoadipate CoA-transferase subunit A compare
PP_2326 -1.4 -4.1 Universal stress protein compare
PP_0063 -1.3 -3.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0566 -1.3 -1.4 translation-related factor compare
PP_0358 -1.3 -6.5 conserved membrane protein of unknown function conserved
PP_0951 -1.3 -5.4 Ribosome hibernation promoting factor compare
PP_5426 -1.3 -4.5 conserved protein of unknown function compare
PP_2088 -1.2 -2.3 RNA polymerase sigma factor SigX compare
PP_0406 -1.2 -1.7 Nucleotidyltransferase family protein compare
PP_1364 -1.2 -4.6 conserved exported protein of unknown function compare
PP_0345 -1.2 -2.4 putative Heptose kinase WapP compare
PP_1871 -1.2 -3.3 Protease HtpX compare
PP_3460 -1.2 -2.0 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_1635 -1.2 -1.4 DNA-binding response regulator compare
PP_2503 -1.2 -2.7 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_0086 -1.1 -2.0 conserved protein of unknown function compare
PP_0760 -1.1 -2.6 conserved membrane protein of unknown function compare
PP_0435 -1.1 -3.1 Peptidase, M23/M37 family compare
PP_1468 -1.1 -1.4 Tyrosine recombinase XerD compare
PP_0801 -1.1 -1.2 conserved exported protein of unknown function compare
PP_0878 -1.1 -3.2 dipeptide ABC transporter, binding subunit compare
PP_2313 -1.1 -1.8 conserved membrane protein of unknown function compare
PP_0881 -1.1 -3.2 dipeptide ABC transporter - putative membrane subunit compare
PP_5000 -1.1 -1.5 peptidase component of the ATP-dependent HslVU protease compare
PP_1048 -1.1 -2.0 putative protein secretion protein for export compare
PP_3906 -1.1 -2.6 conserved protein of unknown function compare
PP_2345 -1.1 -1.9 conserved exported protein of unknown function compare
PP_2348 -1.1 -2.5 Sensor histidine kinase compare
PP_2137 -1.1 -2.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_5661 -1.1 -2.2 putative lipoprotein compare
PP_5473 -1.0 -1.8 putative transcriptional regulator, LuxR family compare
PP_2950 -1.0 -2.5 conserved protein of unknown function compare
PP_4367 -1.0 -3.1 Flagellar assembly protein FliH compare
PP_4696 -1.0 -0.7 Nitrogen regulation protein NR(I) compare
PP_5236 -1.0 -4.1 conserved protein of unknown function compare
PP_1548 -1.0 -1.9 conserved protein of unknown function compare
PP_4613 -1.0 -5.6 outer membrane ferric citrate porin compare
PP_0757 -1.0 -2.6 conserved protein of unknown function compare
PP_2044 -1.0 -1.1 conserved inner membrane protein of unknown function compare
PP_1733 -1.0 -2.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_2214 -1.0 -2.0 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1198 -1.0 -1.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4699 -1.0 -1.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4961 -1.0 -1.1 putative Lipoprotein compare
PP_4370 -1.0 -3.2 Flagellar hook-basal body complex protein FliE compare
PP_2136 -0.9 -2.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5294 -0.9 -2.4 Ribonuclease PH compare
PP_1736 -0.9 -2.2 conserved protein of unknown function compare
PP_0880 -0.9 -2.0 dipeptide ABC transporter - putative membrane subunit compare
PP_4008 -0.9 -1.1 ATP-dependent serine protease compare
PP_2107 -0.9 -1.5 conserved protein of unknown function compare
PP_4480 -0.9 -3.1 arginine N-succinyltransferase, subunit alpha compare
PP_5597 -0.9 -2.0 conserved protein of unknown function compare
PP_1774 -0.9 -1.9 conserved exported protein of unknown function compare
PP_5229 -0.9 -2.5 conserved protein of unknown function compare
PP_2720 -0.9 -1.3 conserved protein of unknown function compare
PP_0413 -0.9 -5.7 Polyamine ABC transporter, permease protein compare
PP_2081 -0.9 -3.6 putative phosphoenolpyruvate synthase regulatory protein compare
PP_4011 -0.9 -6.3 isocitrate dehydrogenase, NADP(+)-specific compare
PP_1088 -0.9 -0.6 Argininosuccinate synthase compare
PP_3020 -0.9 -2.2 putative Serine/threonine protein phosphatase compare
PP_2302 -0.9 -1.9 DNA-binding, ATP-dependent protease compare
PP_4966 -0.9 -1.8 transcriptional regulator of methionine metabolism compare
PP_5701 -0.8 -1.0 conserved protein of unknown function compare
PP_1426 -0.8 -5.0 L-aspartate oxidase compare
PP_0362 -0.8 -4.9 Biotin synthase compare
PP_5075 -0.8 -5.4 glutamate synthase (NADPH) beta subunit compare
PP_1898 -0.8 -0.6 MotA/TolQ/ExbB proton channel family protein compare
PP_1304 -0.8 -2.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2857 -0.8 -1.7 conserved exported protein of unknown function compare
PP_4556 -0.8 -1.4 conserved protein of unknown function compare
PP_5471 -0.8 -1.2 putative response regulator receiver protein compare
PP_5244 -0.8 -2.8 Transcriptional regulator, AraC family compare
PP_3938 -0.8 -1.1 conserved protein of unknown function compare
PP_4685 -0.8 -3.5 conserved protein of unknown function compare
PP_2330 -0.8 -1.8 conserved protein of unknown function compare
PP_3759 -0.8 -2.4 Methylesterase, CheB-like compare
PP_4611 -0.8 -3.1 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3117 -0.8 -1.5 putative protein involved in error-prone processing of DNA lesions compare
PP_0565 -0.8 -2.3 putative enzyme compare
PP_0516 -0.8 -2.0 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_5047 -0.8 -3.0 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4835 -0.8 -1.7 conserved exported protein of unknown function compare
PP_3799 -0.8 -2.5 conserved exported protein of unknown function compare
PP_1968 -0.8 -2.6 TetR family transcriptional regulator compare
PP_0184 -0.8 -0.5 Argininosuccinate lyase compare
PP_3021 -0.8 -3.2 Transporter, LysE family compare
PP_t49 -0.7 -2.3 tRNA-Met compare
PP_0291 -0.7 -1.1 conserved protein of unknown function compare
PP_1386 -0.7 -3.6 Probable efflux pump periplasmic linker TtgA compare
PP_1036 -0.7 -4.2 membrane-bound lytic murein transglycosylase F compare
PP_0834 -0.7 -1.3 Sec translocation complex subunit YajC compare
PP_4094 -0.7 -1.6 conserved protein of unknown function compare
PP_1303 -0.7 -1.8 Sulfate adenylyltransferase subunit 2 compare
PP_0979 -0.7 -2.1 DNA polymerase III subunit chi compare
PP_4271 -0.7 -0.8 conserved protein of unknown function compare
PP_4566 -0.7 -2.7 putative drug/metabolite transporter compare
PP_2624 -0.7 -1.9 conserved protein of unknown function compare
PP_0841 -0.7 -1.5 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4793 -0.7 -1.0 conserved protein of unknown function compare
PP_0628 -0.7 -1.7 conserved protein of unknown function compare
PP_4982 -0.7 -1.4 putative cytochrome b561, iron-regulated compare
PP_2145 -0.7 -1.4 beta-N-acetylglucosaminidase compare
PP_2681 -0.7 -1.2 coenzyme PQQ synthesis protein D compare
PP_2347 -0.7 -2.3 DNA-binding response regulator compare
PP_2090 -0.7 -1.9 Uroporphyrinogen-III C-methyltransferase compare
PP_5640 -0.7 -1.7 conserved protein of unknown function compare
PP_0275 -0.7 -2.3 conserved protein of unknown function compare
PP_3903 -0.7 -0.9 conserved protein of unknown function compare
PP_3280 -0.7 -2.2 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_3904 -0.7 -1.9 conserved protein of unknown function compare
PP_5243 -0.7 -2.2 putative hydrolase compare
PP_3776 -0.7 -3.7 putative permease (RarD protein) compare
PP_1178 -0.7 -1.7 conserved protein of unknown function compare
PP_5230 -0.7 -1.6 Tyrosine recombinase XerC compare
PP_3963 -0.7 -1.9 conserved protein of unknown function compare
PP_0391 -0.7 -2.6 Glycerol-3-phosphate acyltransferase compare
PP_2459 -0.7 -1.0 ribose pyranase compare
PP_3480 -0.7 -1.8 conserved protein of unknown function compare
PP_2245 -0.7 -3.1 Transcriptional regulator, Cro/CI family compare
PP_1256 -0.7 -2.3 putative alpha-ketoglutarate semialdehyde dehydrogenase compare
PP_5090 -0.7 -1.4 putative cell division protein compare
PP_4768 -0.7 -1.6 Exonuclease compare
PP_2054 -0.7 -1.8 putative DNA-binding transcriptional regulator compare
PP_0414 -0.7 -1.6 Polyamine ABC transporter, permease protein compare
PP_2030 -0.6 -2.1 conserved protein of unknown function compare
PP_0276 -0.6 -0.9 Transcriptional regulator, Cro/CI family compare
PP_4056 -0.6 -2.9 putative phosphohydrolase of unknown function compare
PP_4502 -0.6 -2.0 putative enzyme compare
PP_1552 -0.6 -2.2 putative Phage replication protein compare
PP_2520 -0.6 -1.1 conserved protein of unknown function compare
PP_4598 -0.6 -3.0 conserved membrane protein of unknown function compare
PP_4890 -0.6 -0.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_2028 -0.6 -1.8 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2885 -0.6 -1.7 putative Transporter compare
PP_0434 -0.6 -1.8 Anhydro-N-acetylmuramic acid kinase compare
PP_1828 -0.6 -2.0 conserved protein of unknown function compare
PP_3625 -0.6 -2.0 Transporter, LysE family compare
PP_5097 -0.6 -0.6 homoserine O-acetyltransferase compare
PP_3663 -0.6 -3.4 GGDEF domain protein compare
PP_4285 -0.6 -1.6 5-hydroxyisourate hydrolase compare
PP_1981 -0.6 -2.1 tRNA-dihydrouridine synthase C compare
PP_0840 -0.6 -2.3 serine acetyltransferase compare
PP_1021 -0.6 -2.0 DNA-binding transcriptional regulator compare
PP_3098 -0.6 -0.9 conserved protein of unknown function compare
PP_5052 -0.6 -1.0 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_4911 -0.6 -2.5 conserved protein of unknown function compare


Specific Phenotypes

For 14 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For mixed carbon source Trisodium citrate dihydrate across organisms