Experiment set47S220 for Pseudomonas putida KT2440

Compare to:

mixed carbon sources Trisodium citrate dihydrate 10 mM and 4-azido-L-phenylalanine 10 mM

200 most important genes:

  gene name fitness t score description  
PP_4197 -5.3 -5.2 Transcriptional regulator, GntR family conserved
PP_2868 -5.2 -3.6 Transcriptional regulator, Cro/CI family compare
PP_5104 -5.0 -3.5 thiazole synthase compare
PP_4143 -4.9 -3.4 conserved protein of unknown function compare
PP_4922 -4.5 -9.1 Phosphomethylpyrimidine synthase compare
PP_4782 -4.1 -2.8 Phosphomethylpyrimidine kinase compare
PP_1142 -4.1 -2.2 conserved protein of unknown function compare
PP_1421 -3.8 -6.7 putative Sensor histidine kinase TctE compare
PP_1420 -3.7 -5.6 Transcriptional regulatory protein tctD compare
PP_5303 -3.7 -2.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3527 -3.7 -11.4 Transcriptional regulator, TetR family conserved
PP_1418 -3.6 -4.3 putative Tricarboxylate transport protein TctC compare
PP_1417 -3.6 -5.5 putative Tricarboxylate transport protein TctB conserved
PP_1233 -3.5 -2.4 sulfurtransferase compare
PP_4767 -3.4 -9.7 amino acid exporter for phenylalanine, threonine compare
PP_5295 -3.3 -2.3 conserved protein of unknown function compare
PP_0735 -2.8 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_5035 -2.7 -5.8 Histidine utilization repressor compare
PP_1231 -2.7 -2.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1079 -2.6 -1.8 Ornithine carbamoyltransferase compare
PP_1215 -2.5 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_0185 -2.5 -8.2 Positive alginate biosynthesis regulatory protein compare
PP_1348 -2.4 -5.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1416 -2.4 -8.2 putative Tricarboxylate transport protein TctA conserved
PP_3590 -2.4 -6.7 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0164 -2.4 -5.5 conserved protein of unknown function compare
PP_0787 -2.2 -2.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1826 -2.2 -2.9 Hydrolase, isochorismatase family compare
PP_3952 -2.1 -6.7 3-oxoadipate CoA-transferase subunit A compare
PP_4060 -2.0 -7.7 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_2929 -2.0 -6.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1055 -1.9 -2.2 Type II secretion pathway protein GspN compare
PP_4699 -1.9 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4561 -1.9 -1.4 stress response protein compare
PP_1366 -1.9 -2.2 Transcriptional regulator MvaT, P16 subunit compare
PP_4824 -1.9 -4.6 Sensor histidine kinase/response regulator compare
PP_0001 -1.8 -1.7 probable chromosome-partitioning protein compare
PP_1224 -1.8 -3.7 periplasmic subunit of the TolQRA transport system compare
PP_3790 -1.7 -5.9 diaminopimelate epimerase compare
PP_4937 -1.7 -2.7 toluene tolerance protein compare
PP_0995 -1.6 -4.9 conserved membrane protein of unknown function compare
PP_0261 -1.6 -3.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5114 -1.6 -1.5 putative adenine methyltransferase compare
PP_2928 -1.6 -6.1 Saccharopine dehydrogenase compare
PP_0063 -1.6 -4.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1377 -1.6 -4.9 beta-ketoadipyl-CoA thiolase compare
PP_t29 -1.5 -1.7 tRNA-Ala compare
PP_1528 -1.5 -1.8 conserved protein of unknown function compare
PP_5236 -1.5 -6.0 conserved protein of unknown function compare
PP_4695 -1.5 -7.4 Sensory box histidine kinase compare
PP_2217 -1.5 -2.0 enoyl-CoA hydratase compare
PP_2088 -1.5 -2.6 RNA polymerase sigma factor SigX compare
PP_0435 -1.5 -4.1 Peptidase, M23/M37 family compare
PP_4004 -1.5 -3.7 DNA translocase FtsK compare
PP_4696 -1.5 -1.0 Nitrogen regulation protein NR(I) compare
PP_2622 -1.5 -2.6 conserved protein of unknown function compare
PP_3080 -1.4 -3.7 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase conserved
PP_1419 -1.4 -4.0 tricarboxylate-specific outer membrane porin compare
PP_0346 -1.4 -5.7 putative Heptose kinase WapQ compare
PP_4008 -1.4 -1.7 ATP-dependent serine protease compare
PP_2031 -1.4 -2.7 conserved protein of unknown function compare
PP_2326 -1.4 -4.9 Universal stress protein compare
PP_3946 -1.3 -1.5 HTH-type transcriptional repressor NicR compare
PP_3951 -1.3 -3.2 3-oxoadipate CoA-transferase subunit A compare
PP_1216 -1.3 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2348 -1.3 -3.3 Sensor histidine kinase compare
PP_5473 -1.3 -2.1 putative transcriptional regulator, LuxR family compare
PP_4685 -1.3 -4.5 conserved protein of unknown function compare
PP_0951 -1.3 -5.9 Ribosome hibernation promoting factor compare
PP_2650 -1.3 -3.1 putative 4-hydroxybutyrate dehydrogenase compare
PP_0401 -1.3 -1.5 Ribosomal RNA small subunit methyltransferase A compare
PP_1364 -1.2 -5.2 conserved exported protein of unknown function compare
PP_0184 -1.2 -0.8 Argininosuccinate lyase compare
PP_0508 -1.2 -2.5 conserved exported protein of unknown function compare
PP_2029 -1.2 -2.8 von Willebrand factor type A domain protein compare
PP_1268 -1.2 -1.6 putative HtrA suppressor protein sohA compare
PP_4897 -1.2 -3.1 N-acetylmuramoyl-L-alanine amidase compare
PP_4943 -1.2 -1.4 putative Glycosyl transferase compare
PP_3365 -1.2 -1.2 Acetolactate synthase compare
PP_5075 -1.2 -7.1 glutamate synthase (NADPH) beta subunit compare
PP_1733 -1.2 -2.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_1426 -1.2 -6.8 L-aspartate oxidase compare
PP_1381 -1.1 -1.4 4-carboxymuconolactone decarboxylase compare
PP_2087 -1.1 -1.5 CmpX protein compare
PP_5097 -1.1 -0.8 homoserine O-acetyltransferase compare
PP_1088 -1.1 -1.5 Argininosuccinate synthase compare
PP_4262 -1.1 -1.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4890 -1.1 -0.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_0345 -1.1 -2.5 putative Heptose kinase WapP compare
PP_0291 -1.1 -1.7 conserved protein of unknown function compare
PP_1097 -1.1 -1.1 Methionine--tRNA ligase compare
PP_1025 -1.1 -2.6 2-isopropylmalate synthase compare
PP_1114 -1.0 -2.9 SEC-C domain protein compare
PP_4362 -1.0 -2.7 conserved protein of unknown function compare
PP_3191 -1.0 -3.2 putative threonine ammonia-lyase / dehydratase compare
PP_5146 -1.0 -4.5 RNA pyrophosphohydrolase compare
PP_5198 -1.0 -1.9 conserved protein of unknown function compare
PP_0358 -1.0 -5.4 conserved membrane protein of unknown function conserved
PP_2001 -1.0 -1.4 O-succinylhomoserine sulfhydrylase compare
PP_5017 -1.0 -1.1 Sec-independent protein translocase protein TatB compare
PP_3555 -1.0 -3.3 putative Transmembrane sensor compare
PP_5327 -1.0 -1.0 putative phosphate ABC transporter, permease subunit compare
PP_4480 -1.0 -3.9 arginine N-succinyltransferase, subunit alpha compare
PP_0880 -1.0 -2.8 dipeptide ABC transporter - putative membrane subunit compare
PP_1763 -1.0 -2.1 putative oxidoreductase compare
PP_1147 -1.0 -3.2 conserved protein of unknown function compare
PP_2327 -1.0 -0.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3876 -0.9 -1.8 conserved protein of unknown function compare
PP_0948 -0.9 -1.5 Phosphocarrier protein HPr compare
PP_0339 -0.9 -0.6 Pyruvate dehydrogenase E1 component compare
PP_5000 -0.9 -1.0 peptidase component of the ATP-dependent HslVU protease compare
PP_0507 -0.9 -3.7 putative ABC efflux transporter, ATP-binding protein conserved
PP_0147 -0.9 -5.0 Citrate transporter conserved
PP_4642 -0.9 -0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_0422 -0.9 -0.6 Indole-3-glycerol phosphate synthase compare
PP_1198 -0.9 -1.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2773 -0.9 -1.6 conserved protein of unknown function compare
PP_0413 -0.9 -5.6 Polyamine ABC transporter, permease protein compare
PP_1384 -0.9 -4.2 Probable efflux pump outer membrane protein TtgC compare
PP_4011 -0.9 -6.5 isocitrate dehydrogenase, NADP(+)-specific compare
PP_2433 -0.9 -0.6 conserved protein of unknown function compare
PP_3487 -0.9 -2.1 conserved exported protein of unknown function compare
PP_1051 -0.9 -1.6 Type II secretion pathway protein XcpV compare
PP_2459 -0.9 -2.0 ribose pyranase compare
PP_2836 -0.9 -3.1 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_0978 -0.9 -1.4 conserved protein of unknown function compare
PP_1441 -0.9 -2.7 tRNA (cmo5U34)-methyltransferase compare
PP_0254 -0.9 -1.7 conserved protein of unknown function compare
PP_4739 -0.8 -2.1 conserved protein of unknown function compare
PP_2898 -0.8 -1.9 conserved exported protein of unknown function compare
PP_4942 -0.8 -1.5 conserved protein of unknown function compare
PP_3055 -0.8 -2.7 Pyocin R2_PP, tail formation protein compare
PP_3766 -0.8 -1.9 Lactoylglutathione lyase compare
PP_4613 -0.8 -4.9 outer membrane ferric citrate porin compare
PP_0612 -0.8 -4.5 FAD-dependent glycine/D-amino acid oxidase compare
PP_0879 -0.8 -3.0 dipeptide ABC transporter - putative ATP binding subunit compare
PP_0440 -0.8 -1.8 Elongation factor Tu-A compare
PP_2720 -0.8 -1.2 conserved protein of unknown function compare
PP_0362 -0.8 -4.9 Biotin synthase compare
PP_4734 -0.8 -3.5 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_5230 -0.8 -1.7 Tyrosine recombinase XerC compare
PP_5203 -0.8 -3.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_4227 -0.8 -1.3 conserved protein of unknown function compare
PP_4917 -0.8 -2.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1493 -0.8 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0048 -0.8 -1.0 conserved protein of unknown function compare
PP_1036 -0.8 -4.6 membrane-bound lytic murein transglycosylase F compare
PP_5426 -0.8 -3.5 conserved protein of unknown function compare
PP_1812 -0.8 -1.7 conserved protein of unknown function compare
PP_2976 -0.8 -1.3 putative transposase compare
PP_5289 -0.8 -0.5 Acetylglutamate kinase compare
PP_3453 -0.8 -4.1 putative Sensor protein RstB compare
PP_5582 -0.8 -1.1 conserved protein of unknown function compare
PP_2023 -0.8 -2.6 Glutathione S-transferase family protein compare
PP_4722 -0.8 -2.3 Transcription elongation factor GreA compare
PP_3773 -0.8 -1.8 conserved protein of unknown function compare
PP_3121 -0.8 -2.0 transcriptional regulator, LysR family compare
PP_0305 -0.7 -2.5 HTH-type transcriptional regulator CdhR compare
PP_1562 -0.7 -1.1 putative Phage terminase, small subunit compare
PP_3649 -0.7 -1.0 Transcriptional regulator, GntR family compare
PP_2304 -0.7 -2.9 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_0792 -0.7 -3.3 catabolite repressor-activator, DNA-binding transcriptional dual regulator compare
PP_4424 -0.7 -0.9 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1021 -0.7 -1.7 DNA-binding transcriptional regulator compare
PP_1635 -0.7 -1.2 DNA-binding response regulator compare
PP_4679 -0.7 -0.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3051 -0.7 -2.1 Pyocin R2_PP, tail spike protein compare
PP_3324 -0.7 -3.2 GTP cyclohydrolase I compare
PP_3759 -0.7 -2.7 Methylesterase, CheB-like compare
PP_4264 -0.7 -2.9 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1568 -0.7 -1.1 conserved protein of unknown function compare
PP_0965 -0.7 -0.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1367 -0.7 -2.9 formyltetrahydrofolate hydrolase compare
PP_0236 -0.7 -1.1 NAD(P)H-dependent FMN reductase subunit compare
PP_1445 -0.7 -4.0 carbohydrate-selective porin compare
PP_3891 -0.7 -1.6 conserved protein of unknown function compare
PP_4505 -0.7 -2.9 Sensor histidine kinase compare
PP_1994 -0.7 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_3904 -0.7 -1.7 conserved protein of unknown function compare
PP_1864 -0.7 -1.8 conserved protein of unknown function compare
PP_1385 -0.7 -5.5 Probable efflux pump membrane transporter TtgB compare
PP_1440 -0.7 -2.5 tRNA (mo5U34)-methyltransferase compare
PP_2309 -0.7 -1.0 conserved protein of unknown function compare
PP_0878 -0.7 -2.3 dipeptide ABC transporter, binding subunit compare
PP_3627 -0.7 -2.3 conserved protein of unknown function compare
PP_0967 -0.7 -0.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1938 -0.7 -1.0 conserved protein of unknown function compare
PP_1789 -0.7 -2.6 Hydrolase, haloacid dehalogenase-like family compare
PP_0119 -0.7 -1.6 putative zinc uptake regulation protein ZUR compare
PP_1662 -0.7 -2.2 conserved protein of unknown function compare
PP_3105 -0.7 -1.5 conserved membrane protein of unknown function compare
PP_1217 -0.7 -1.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1309 -0.7 -2.6 conserved exported protein of unknown function compare
PP_0846 -0.7 -0.6 DnaK-like molecular chaperone specific for IscU compare
PP_4971 -0.7 -4.0 putative Outer membrane-bound lytic murein transglycolase A compare
PP_5328 -0.7 -0.5 putative phosphate transport system permease protein compare
PP_2247 -0.7 -2.1 putative Endoribonuclease compare
PP_4481 -0.7 -2.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_3318 -0.7 -1.5 conserved protein of unknown function compare
PP_2972 -0.7 -1.2 conserved protein of unknown function compare


Specific Phenotypes

For 14 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For mixed carbon source Trisodium citrate dihydrate across organisms