Experiment set47S210 for Pseudomonas putida KT2440

Compare to:

mixed carbon sources Trisodium citrate dihydrate 10 mM and L-Phenylalanine 5 mM

200 most important genes:

  gene name fitness t score description  
PP_5104 -5.1 -5.0 thiazole synthase compare
PP_4922 -4.3 -10.4 Phosphomethylpyrimidine synthase compare
PP_1233 -3.9 -2.7 sulfurtransferase compare
PP_4782 -3.6 -4.8 Phosphomethylpyrimidine kinase compare
PP_1231 -3.4 -2.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1420 -3.2 -7.1 Transcriptional regulatory protein tctD compare
PP_1079 -2.9 -2.0 Ornithine carbamoyltransferase compare
PP_1421 -2.9 -5.7 putative Sensor histidine kinase TctE compare
PP_3790 -2.8 -7.6 diaminopimelate epimerase compare
PP_1418 -2.8 -6.5 putative Tricarboxylate transport protein TctC compare
PP_0001 -2.8 -1.9 probable chromosome-partitioning protein compare
PP_4620 -2.7 -8.6 Fumarylacetoacetase compare
PP_5075 -2.7 -11.1 glutamate synthase (NADPH) beta subunit compare
PP_1426 -2.6 -11.9 L-aspartate oxidase compare
PP_0164 -2.6 -6.0 conserved protein of unknown function compare
PP_4364 -2.5 -3.6 putative Anti-sigma F factor antagonist compare
PP_4619 -2.4 -5.4 Maleylacetoacetate isomerase conserved
PP_5303 -2.4 -4.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4937 -2.4 -2.8 toluene tolerance protein compare
PP_4917 -2.2 -3.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4532 -2.2 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1733 -2.1 -4.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_0787 -2.0 -2.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5076 -2.0 -13.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_0025 -2.0 -1.7 hypothetical protein compare
PP_0735 -2.0 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_3241 -1.9 -1.8 conserved exported protein of unknown function compare
PP_5483 -1.8 -2.7 conserved protein of unknown function compare
PP_4696 -1.8 -1.3 Nitrogen regulation protein NR(I) compare
PP_1348 -1.8 -3.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0846 -1.7 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_2740 -1.7 -3.1 Transcriptional regulator, MerR family compare
PP_1088 -1.7 -1.2 Argininosuccinate synthase compare
PP_1898 -1.7 -1.1 MotA/TolQ/ExbB proton channel family protein compare
PP_1198 -1.7 -1.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0406 -1.7 -2.7 Nucleotidyltransferase family protein compare
PP_0362 -1.6 -8.1 Biotin synthase compare
PP_0147 -1.6 -7.7 Citrate transporter conserved
PP_4060 -1.6 -7.7 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0184 -1.6 -1.1 Argininosuccinate lyase compare
PP_0420 -1.6 -2.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3946 -1.6 -1.8 HTH-type transcriptional repressor NicR compare
PP_3098 -1.5 -1.8 conserved protein of unknown function compare
PP_2217 -1.5 -2.0 enoyl-CoA hydratase compare
PP_0435 -1.5 -4.7 Peptidase, M23/M37 family compare
PP_2390 -1.5 -5.8 Transcriptional regulator, LysR family compare
PP_5475 -1.5 -2.2 conserved protein of unknown function compare
PP_5225 -1.5 -1.8 frataxin compare
PP_5097 -1.5 -1.0 homoserine O-acetyltransferase compare
PP_2388 -1.5 -2.1 Transporter, LysE family compare
PP_4004 -1.5 -4.0 DNA translocase FtsK compare
PP_3447 -1.4 -1.7 conserved membrane protein of unknown function compare
PP_2001 -1.4 -2.3 O-succinylhomoserine sulfhydrylase compare
PP_4994 -1.4 -0.9 conserved protein of unknown function compare
PP_5035 -1.4 -4.7 Histidine utilization repressor compare
PP_4695 -1.4 -7.2 Sensory box histidine kinase compare
PP_4966 -1.4 -2.6 transcriptional regulator of methionine metabolism compare
PP_0593 -1.4 -1.1 putative ribosome-binding factor compare
PP_4942 -1.3 -2.2 conserved protein of unknown function compare
PP_2327 -1.3 -0.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0417 -1.3 -2.3 Anthranilate synthase component 1 compare
PP_2152 -1.3 -2.1 glycerophosphoryl diester phosphodiesterase compare
PP_0422 -1.3 -0.9 Indole-3-glycerol phosphate synthase compare
PP_4989 -1.3 -3.1 Protein PilJ compare
PP_t12 -1.3 -1.2 tRNA-Thr compare
PP_4008 -1.3 -2.5 ATP-dependent serine protease compare
PP_5143 -1.3 -3.1 conserved membrane protein of unknown function compare
PP_4808 -1.2 -2.5 23S rRNA m3psi1915 methyltransferase compare
PP_3505 -1.2 -2.0 conserved protein of unknown function compare
PP_5114 -1.2 -1.6 putative adenine methyltransferase compare
PP_0346 -1.2 -4.1 putative Heptose kinase WapQ compare
PP_4262 -1.2 -1.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0048 -1.2 -1.4 conserved protein of unknown function compare
PP_5313 -1.2 -1.6 DNA-binding protein HU-alpha compare
PP_5289 -1.2 -0.8 Acetylglutamate kinase compare
PP_1269 -1.2 -1.4 Universal stress protein family compare
PP_4824 -1.2 -4.3 Sensor histidine kinase/response regulator compare
PP_4684 -1.1 -4.0 conserved protein of unknown function with kinase-like domain compare
PP_0185 -1.1 -5.1 Positive alginate biosynthesis regulatory protein compare
PP_4890 -1.1 -1.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0653 -1.1 -1.5 conserved protein of unknown function compare
PP_1734 -1.1 -2.6 Probable septum site-determining protein MinC compare
PP_0153 -1.1 -1.5 hypothetical protein compare
PP_4679 -1.1 -0.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0345 -1.1 -2.7 putative Heptose kinase WapP compare
PP_1142 -1.1 -1.2 conserved protein of unknown function compare
PP_2592 -1.1 -3.2 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_1366 -1.1 -1.7 Transcriptional regulator MvaT, P16 subunit compare
PP_0725 -1.0 -1.5 conserved hypothetical TPR repeat protein compare
PP_0967 -1.0 -0.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2681 -1.0 -1.3 coenzyme PQQ synthesis protein D compare
PP_4480 -1.0 -4.2 arginine N-succinyltransferase, subunit alpha compare
PP_5658 -1.0 -2.8 protein of unknown function compare
PP_2088 -1.0 -2.4 RNA polymerase sigma factor SigX compare
PP_3971 -1.0 -1.7 conserved protein of unknown function compare
PP_1304 -1.0 -3.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4143 -1.0 -3.0 conserved protein of unknown function compare
PP_4699 -1.0 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4362 -1.0 -2.8 conserved protein of unknown function compare
PP_0963 -1.0 -2.1 putative BolA family protein compare
PP_5230 -1.0 -2.6 Tyrosine recombinase XerC compare
PP_5241 -1.0 -1.5 DNA-binding response regulator, LuxR family compare
PP_2402 -0.9 -0.6 putative Sensor histidine kinase compare
PP_1598 -0.9 -2.3 regulatory intramembrane protein RIP zinc protease compare
PP_4477 -0.9 -4.0 N-succinylarginine dihydrolase compare
PP_0290 -0.9 -0.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3258 -0.9 -1.7 conserved protein of unknown function compare
PP_2976 -0.9 -1.3 putative transposase compare
PP_2999 -0.9 -1.3 Glyoxalase family protein compare
PP_4944 -0.9 -2.0 Carbamoyltransferase compare
PP_4066 -0.9 -2.2 methylglutaconyl-CoA hydratase compare
PP_1906 -0.9 -2.7 ribosomal large subunit pseudouridine synthase C compare
PP_4678 -0.9 -0.6 Ketol-acid reductoisomerase compare
PP_1025 -0.9 -3.0 2-isopropylmalate synthase compare
PP_3511 -0.9 -0.6 Branched-chain-amino-acid aminotransferase compare
PP_5311 -0.9 -4.3 putative signal transduction protein compare
PP_4379 -0.9 -2.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5486 -0.9 -1.8 conserved protein of unknown function compare
PP_4997 -0.9 -1.0 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1381 -0.9 -1.2 4-carboxymuconolactone decarboxylase compare
PP_0393 -0.9 -0.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3484 -0.9 -2.9 Response regulator receiver protein compare
PP_0965 -0.9 -1.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0630 -0.9 -1.0 DNA gyrase inhibitor YacG compare
PP_4785 -0.9 -2.3 conserved exported protein of unknown function compare
PP_4387 -0.9 -2.1 conserved exported protein of unknown function compare
PP_5229 -0.9 -2.5 conserved protein of unknown function compare
PP_0063 -0.8 -3.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5048 -0.8 -3.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5628 -0.8 -1.4 conserved protein of unknown function compare
PP_0821 -0.8 -2.8 conserved exported protein of unknown function compare
PP_4943 -0.8 -1.2 putative Glycosyl transferase compare
PP_3277 -0.8 -2.7 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_1620 -0.8 -4.1 5'(3')-nucleotidase and polyphosphatase compare
PP_4829 -0.8 -1.5 putative precorrin-3B synthase compare
PP_4819 -0.8 -3.5 conserved protein of unknown function compare
PP_5324 -0.8 -1.7 Response regulator compare
PP_4481 -0.8 -3.2 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5621 -0.8 -1.8 protein of unknown function compare
PP_5748 -0.8 -1.0 cytochrome c heme lyase subunit compare
PP_5038 -0.8 -1.9 conserved lipoprotein of unknown function compare
PP_2497 -0.8 -2.0 conserved protein of unknown function compare
PP_5201 -0.8 -1.1 conserved protein of unknown function, UPF0149 family compare
PP_1647 -0.8 -1.9 conserved protein of unknown function compare
PP_0550 -0.8 -2.1 conserved protein of unknown function compare
PP_0612 -0.8 -4.2 FAD-dependent glycine/D-amino acid oxidase compare
PP_1623 -0.8 -3.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_5198 -0.8 -1.6 conserved protein of unknown function compare
PP_3810 -0.8 -1.0 conserved protein of unknown function compare
PP_0291 -0.8 -1.5 conserved protein of unknown function compare
PP_5216 -0.8 -0.5 exopolyphosphatase compare
PP_4504 -0.8 -1.2 conserved exported protein of unknown function compare
PP_5227 -0.8 -4.1 diaminopimelate decarboxylase compare
PP_1054 -0.8 -1.6 Type II secretion pathway protein XcpZ compare
PP_0440 -0.8 -1.8 Elongation factor Tu-A compare
PP_4264 -0.8 -3.3 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1697 -0.7 -1.7 transcriptional regulator, GntR family compare
PP_0421 -0.7 -1.5 Anthranilate phosphoribosyltransferase compare
PP_1417 -0.7 -2.5 putative Tricarboxylate transport protein TctB conserved
PP_5448 -0.7 -1.9 conserved protein of unknown function compare
PP_1021 -0.7 -2.6 DNA-binding transcriptional regulator compare
PP_3555 -0.7 -2.7 putative Transmembrane sensor compare
PP_3789 -0.7 -3.4 putative Efflux transporter compare
PP_1912 -0.7 -1.7 Phosphate acyltransferase compare
PP_5652 -0.7 -1.3 conserved protein of unknown function, phage origin compare
PP_5339 -0.7 -1.8 transcriptional regulator, ornithine utilization compare
PP_0022 -0.7 -0.8 hypothetical protein compare
PP_1635 -0.7 -1.2 DNA-binding response regulator compare
PP_0914 -0.7 -4.2 GGDEF domain protein compare
PP_5128 -0.7 -1.7 Dihydroxy-acid dehydratase compare
PP_1716 -0.7 -1.5 Transcriptional regulator, Cro/CI family compare
PP_5185 -0.7 -0.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1764 -0.7 -1.4 Phosphoglycolate phosphatase 2 compare
PP_0978 -0.7 -1.8 conserved protein of unknown function compare
PP_0874 -0.7 -1.5 conserved protein of unknown function compare
PP_1430 -0.7 -2.8 putative periplasmic serine endoprotease DegP-like compare
PP_4910 -0.7 -1.3 conserved protein of unknown function compare
PP_1349 -0.7 -2.4 ATP:cob(I)alamin adenosyltransferase compare
PP_1217 -0.7 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0425 -0.7 -1.8 conserved protein of unknown function compare
PP_3409 -0.7 -1.7 putative Cobalamin biosynthesis protein cobE compare
PP_5519 -0.7 -2.2 conserved protein of unknown function of phage origin compare
PP_2503 -0.7 -0.8 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_4426 -0.7 -2.4 Amino acid ABC transporter, permease protein compare
PP_0261 -0.7 -2.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5328 -0.7 -0.8 putative phosphate transport system permease protein compare
PP_1303 -0.7 -2.2 Sulfate adenylyltransferase subunit 2 compare
PP_0366 -0.7 -2.0 dethiobiotin synthetase compare
PP_4268 -0.7 -0.9 nucleoid-associated broad specificity regulator compare
PP_1826 -0.7 -1.2 Hydrolase, isochorismatase family compare
PP_3590 -0.7 -2.2 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_3964 -0.7 -2.3 transposase compare
PP_3312 -0.7 -1.2 putative Heat shock protein compare
PP_2389 -0.7 -2.4 conserved protein of unknown function compare
PP_4891 -0.7 -2.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1742 -0.7 -1.7 conserved inner membrane protein of unknown function compare
PP_5453 -0.7 -1.4 conserved protein of unknown function compare
PP_0566 -0.7 -0.9 translation-related factor compare
PP_4505 -0.7 -2.8 Sensor histidine kinase compare
PP_1322 -0.7 -1.2 putative Lipoprotein compare


Specific Phenotypes

For 5 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For mixed carbon source Trisodium citrate dihydrate across organisms