Experiment set47S209 for Pseudomonas putida KT2440

Compare to:

mixed carbon sources Trisodium citrate dihydrate 10 mM and L-Phenylalanine 5 mM

200 most important genes:

  gene name fitness t score description  
PP_5104 -4.7 -5.6 thiazole synthase compare
PP_4922 -4.6 -9.8 Phosphomethylpyrimidine synthase compare
PP_1421 -4.0 -6.7 putative Sensor histidine kinase TctE compare
PP_1420 -3.5 -6.3 Transcriptional regulatory protein tctD compare
PP_1233 -3.5 -3.3 sulfurtransferase compare
PP_3790 -3.4 -7.7 diaminopimelate epimerase compare
PP_4620 -3.3 -8.8 Fumarylacetoacetase compare
PP_4782 -3.2 -4.8 Phosphomethylpyrimidine kinase compare
PP_4619 -3.2 -7.8 Maleylacetoacetate isomerase conserved
PP_0787 -3.1 -2.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0735 -2.9 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_5075 -2.9 -11.9 glutamate synthase (NADPH) beta subunit compare
PP_1079 -2.8 -1.9 Ornithine carbamoyltransferase compare
PP_1418 -2.7 -6.5 putative Tricarboxylate transport protein TctC compare
PP_5303 -2.7 -4.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1348 -2.6 -5.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4917 -2.5 -3.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1231 -2.4 -3.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_t12 -2.4 -1.6 tRNA-Thr compare
PP_1426 -2.4 -9.8 L-aspartate oxidase compare
PP_2088 -2.0 -3.6 RNA polymerase sigma factor SigX compare
PP_4937 -1.9 -2.9 toluene tolerance protein compare
PP_5076 -1.9 -12.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_0957 -1.9 -2.1 D-arabinose 5-phosphate isomerase compare
PP_0420 -1.8 -2.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1679 -1.8 -2.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1598 -1.7 -3.2 regulatory intramembrane protein RIP zinc protease compare
PP_5313 -1.6 -2.7 DNA-binding protein HU-alpha compare
PP_3505 -1.6 -1.9 conserved protein of unknown function compare
PP_3892 -1.6 -1.8 conserved protein of unknown function compare
PP_4008 -1.6 -2.1 ATP-dependent serine protease compare
PP_4364 -1.6 -4.2 putative Anti-sigma F factor antagonist compare
PP_1088 -1.5 -1.1 Argininosuccinate synthase compare
PP_0345 -1.5 -3.4 putative Heptose kinase WapP compare
PP_0291 -1.5 -2.0 conserved protein of unknown function compare
PP_4004 -1.5 -4.1 DNA translocase FtsK compare
PP_4684 -1.5 -4.6 conserved protein of unknown function with kinase-like domain compare
PP_1734 -1.5 -3.1 Probable septum site-determining protein MinC compare
PP_0164 -1.5 -5.1 conserved protein of unknown function compare
PP_4480 -1.5 -5.1 arginine N-succinyltransferase, subunit alpha compare
PP_0362 -1.5 -6.9 Biotin synthase compare
PP_4696 -1.5 -1.7 Nitrogen regulation protein NR(I) compare
PP_1826 -1.5 -1.4 Hydrolase, isochorismatase family compare
PP_0841 -1.4 -3.0 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_0025 -1.4 -1.3 hypothetical protein compare
PP_5035 -1.4 -4.7 Histidine utilization repressor compare
PP_0184 -1.4 -1.0 Argininosuccinate lyase compare
PP_4828 -1.4 -1.3 Precorrin-8X methylmutase compare
PP_1344 -1.4 -1.8 conserved protein of unknown function compare
PP_0439 -1.4 -3.8 conserved protein of unknown function compare
PP_1303 -1.4 -3.6 Sulfate adenylyltransferase subunit 2 compare
PP_0063 -1.4 -4.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3840 -1.3 -1.6 conserved protein of unknown function compare
PP_0685 -1.3 -2.8 conserved protein of unknown function compare
PP_4890 -1.3 -0.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_1198 -1.3 -2.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0566 -1.3 -1.4 translation-related factor compare
PP_4695 -1.3 -6.7 Sensory box histidine kinase compare
PP_0593 -1.3 -1.0 putative ribosome-binding factor compare
PP_4829 -1.3 -2.4 putative precorrin-3B synthase compare
PP_5097 -1.3 -1.5 homoserine O-acetyltransferase compare
PP_4060 -1.3 -6.5 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0346 -1.3 -4.3 putative Heptose kinase WapQ compare
PP_3064 -1.3 -2.2 Phage tail protein compare
PP_4532 -1.2 -1.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_3434 -1.2 -2.0 conserved protein of unknown function compare
PP_0147 -1.2 -6.4 Citrate transporter conserved
PP_3555 -1.2 -4.4 putative Transmembrane sensor compare
PP_2327 -1.2 -0.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0834 -1.2 -2.0 Sec translocation complex subunit YajC compare
PP_0339 -1.2 -0.8 Pyruvate dehydrogenase E1 component compare
PP_2001 -1.1 -2.1 O-succinylhomoserine sulfhydrylase compare
PP_0422 -1.1 -0.8 Indole-3-glycerol phosphate synthase compare
PP_2433 -1.1 -0.7 conserved protein of unknown function compare
PP_1979 -1.1 -2.1 putative Hydrolase compare
PP_5717 -1.1 -2.1 conserved protein of unknown function compare
PP_4143 -1.1 -2.3 conserved protein of unknown function compare
PP_2681 -1.1 -1.7 coenzyme PQQ synthesis protein D compare
PP_4223 -1.1 -1.8 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2396 -1.1 -1.8 conserved exported protein of unknown function compare
PP_4642 -1.0 -1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_5289 -1.0 -0.7 Acetylglutamate kinase compare
PP_4994 -1.0 -1.0 conserved protein of unknown function compare
PP_0417 -1.0 -2.5 Anthranilate synthase component 1 compare
PP_1217 -1.0 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4268 -1.0 -1.0 nucleoid-associated broad specificity regulator compare
PP_2378 -0.9 -1.2 Fe/S biogenesis protein NfuA compare
PP_1216 -0.9 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1304 -0.9 -3.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1898 -0.9 -0.9 MotA/TolQ/ExbB proton channel family protein compare
PP_0185 -0.9 -4.9 Positive alginate biosynthesis regulatory protein compare
PP_0512 -0.9 -1.5 hypothetical protein compare
PP_0153 -0.9 -1.7 hypothetical protein compare
PP_5735 -0.9 -2.5 conserved hypothetical protein compare
PP_5106 -0.9 -2.2 conserved inner membrane protein compare
PP_1620 -0.9 -3.0 5'(3')-nucleotidase and polyphosphatase compare
PP_0967 -0.9 -0.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5582 -0.9 -1.2 conserved protein of unknown function compare
PP_4517 -0.9 -1.6 conserved protein of unknown function compare
PP_1215 -0.9 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_0959 -0.9 -1.2 phospholipid ABC transporter compare
PP_4260 -0.9 -2.5 conserved protein of unknown function compare
PP_4481 -0.9 -3.4 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5324 -0.9 -1.2 Response regulator compare
PP_1025 -0.9 -2.7 2-isopropylmalate synthase compare
PP_4679 -0.9 -0.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2217 -0.9 -1.2 enoyl-CoA hydratase compare
PP_2390 -0.9 -4.3 Transcriptional regulator, LysR family compare
PP_5028 -0.9 -1.6 proline iminopeptidase compare
PP_2882 -0.9 -2.6 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_5575 -0.9 -1.6 conserved protein of unknown function compare
PP_0135 -0.8 -2.9 conserved exported protein of unknown function compare
PP_0888 -0.8 -1.1 Photosynthetic apparatus regulatory protein RegA compare
PP_2729 -0.8 -3.4 conserved protein of unknown function compare
PP_4561 -0.8 -0.8 stress response protein compare
PP_0508 -0.8 -2.3 conserved exported protein of unknown function compare
PP_0276 -0.8 -1.1 Transcriptional regulator, Cro/CI family compare
PP_2142 -0.8 -2.0 Cell division inhibitor SulA compare
PP_4546 -0.8 -1.7 ATP-dependent helicase HrpA compare
PP_1097 -0.8 -1.0 Methionine--tRNA ligase compare
PP_3484 -0.8 -3.0 Response regulator receiver protein compare
PP_5232 -0.8 -1.3 conserved protein of unknown function compare
PP_2127 -0.8 -2.4 Sensor histidine kinase compare
PP_1430 -0.8 -3.3 putative periplasmic serine endoprotease DegP-like compare
PP_1404 -0.8 -1.3 conserved protein of unknown function compare
PP_5185 -0.8 -0.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4379 -0.8 -2.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1731 -0.8 -2.0 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_2388 -0.8 -2.4 Transporter, LysE family compare
PP_5143 -0.8 -1.3 conserved membrane protein of unknown function compare
PP_0290 -0.8 -0.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3258 -0.8 -1.5 conserved protein of unknown function compare
PP_3935 -0.8 -2.0 conserved protein of unknown function compare
PP_2330 -0.8 -1.7 conserved protein of unknown function compare
PP_3332 -0.8 -1.5 putative cytochrome c-type protein compare
PP_2402 -0.8 -0.5 putative Sensor histidine kinase compare
PP_4254 -0.8 -1.2 conserved protein of unknown function compare
PP_0305 -0.8 -2.2 HTH-type transcriptional regulator CdhR compare
PP_3447 -0.8 -1.1 conserved membrane protein of unknown function compare
PP_4678 -0.8 -0.5 Ketol-acid reductoisomerase compare
PP_0139 -0.8 -2.9 putative Lipoprotein compare
PP_2459 -0.8 -1.5 ribose pyranase compare
PP_4792 -0.8 -1.8 conserved exported protein of unknown function compare
PP_1346 -0.8 -2.2 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_0958 -0.8 -2.2 phospholipid ABC transporter ATP-binding subunit compare
PP_1788 -0.8 -1.4 conserved protein of unknown function compare
PP_4133 -0.8 -1.5 Transcriptional regulator-related protein compare
PP_5128 -0.8 -1.5 Dihydroxy-acid dehydratase compare
PP_0393 -0.8 -0.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1366 -0.8 -0.6 Transcriptional regulator MvaT, P16 subunit compare
PP_4859 -0.8 -3.0 Transcriptional regulator, TetR family compare
PP_0612 -0.7 -3.7 FAD-dependent glycine/D-amino acid oxidase compare
PP_3433 -0.7 -4.3 4-hydroxyphenylpyruvate dioxygenase conserved
PP_2611 -0.7 -2.1 membrane protein of unknown function compare
PP_4261 -0.7 -1.8 cation-transporting P-type ATPase compare
PP_5748 -0.7 -0.9 cytochrome c heme lyase subunit compare
PP_1635 -0.7 -1.0 DNA-binding response regulator compare
PP_5328 -0.7 -0.7 putative phosphate transport system permease protein compare
PP_4808 -0.7 -1.2 23S rRNA m3psi1915 methyltransferase compare
PP_1972 -0.7 -3.0 aromatic-amino-acid aminotransferase compare
PP_0495 -0.7 -3.2 type 1 L-asparaginase compare
PP_3884 -0.7 -1.8 Phage holin, lambda family compare
PP_4471 -0.7 -1.6 Magnesium transporter compare
PP_0122 -0.7 -1.9 conserved exported protein of unknown function compare
PP_2908 -0.7 -2.3 DNA-binding transcriptional repressor compare
PP_5054 -0.7 -0.9 glutaredoxin 3 compare
PP_5311 -0.7 -3.3 putative signal transduction protein compare
PP_5236 -0.7 -3.7 conserved protein of unknown function compare
PP_4332 -0.7 -1.9 Chemotaxis protein CheW compare
PP_5690 -0.7 -3.0 conserved protein of unknown function compare
PP_5073 -0.7 -0.9 conserved exported protein of unknown function compare
PP_5244 -0.7 -2.9 Transcriptional regulator, AraC family compare
PP_3451 -0.7 -2.8 conserved exported protein of unknown function compare
PP_2640 -0.7 -2.0 Acetyltransferase, GNAT family compare
PP_4681 -0.7 -1.6 conserved protein of unknown function compare
PP_2868 -0.7 -2.9 Transcriptional regulator, Cro/CI family compare
PP_5198 -0.7 -1.5 conserved protein of unknown function compare
PP_4266 -0.7 -1.9 Adenine phosphoribosyltransferase compare
PP_0261 -0.7 -2.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2152 -0.7 -1.8 glycerophosphoryl diester phosphodiesterase compare
PP_1844 -0.7 -2.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_4699 -0.7 -1.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4997 -0.7 -0.6 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1912 -0.7 -1.5 Phosphate acyltransferase compare
PP_4058 -0.7 -0.5 1,4-alpha-glucan branching enzyme compare
PP_4482 -0.7 -1.3 Transcriptional regulator, AraC family compare
PP_5114 -0.7 -1.0 putative adenine methyltransferase compare
PP_3105 -0.7 -1.4 conserved membrane protein of unknown function compare
PP_4797 -0.7 -1.2 conserved protein of unknown function compare
PP_5203 -0.7 -2.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_3307 -0.7 -0.9 conserved protein of unknown function compare
PP_4879 -0.6 -2.0 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_0965 -0.6 -1.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4419 -0.6 -1.3 transposase compare
PP_4824 -0.6 -2.7 Sensor histidine kinase/response regulator compare
PP_5100 -0.6 -1.4 dITP/XTP pyrophosphatase compare
PP_1417 -0.6 -1.9 putative Tricarboxylate transport protein TctB conserved
PP_0435 -0.6 -2.5 Peptidase, M23/M37 family compare
PP_2186 -0.6 -2.0 putative Formate dehydrogenase, delta subunit compare
PP_2883 -0.6 -0.7 conserved protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For mixed carbon source Trisodium citrate dihydrate across organisms