Experiment set47S196 for Pseudomonas putida KT2440

Compare to:

Trisodium citrate dihydrate 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PP_5075 -4.7 -5.6 glutamate synthase (NADPH) beta subunit compare
PP_5076 -4.6 -11.6 L-glutamate synthase(NADPH) alpha subunit compare
PP_5104 -4.4 -4.3 thiazole synthase compare
PP_4922 -3.8 -9.5 Phosphomethylpyrimidine synthase compare
PP_1421 -3.7 -5.1 putative Sensor histidine kinase TctE conserved
PP_1418 -3.5 -2.4 putative Tricarboxylate transport protein TctC conserved
PP_3365 -3.5 -1.7 Acetolactate synthase compare
PP_1513 -3.2 -2.7 Ribosomal RNA small subunit methyltransferase J compare
PP_1233 -3.2 -2.2 sulfurtransferase compare
PP_4782 -3.1 -3.7 Phosphomethylpyrimidine kinase compare
PP_4701 -3.0 -1.5 glucose-6-phosphate isomerase compare
PP_5303 -3.0 -2.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1420 -2.7 -5.4 Transcriptional regulatory protein tctD conserved
PP_5652 -2.7 -3.0 conserved protein of unknown function, phage origin compare
PP_1231 -2.7 -1.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0735 -2.6 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_0787 -2.5 -1.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3790 -2.4 -5.9 diaminopimelate epimerase compare
PP_4917 -2.4 -2.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2088 -2.3 -3.2 RNA polymerase sigma factor SigX compare
PP_0164 -2.3 -4.2 conserved protein of unknown function compare
PP_5017 -2.3 -1.6 Sec-independent protein translocase protein TatB compare
PP_0362 -2.2 -9.5 Biotin synthase compare
PP_1079 -2.2 -1.5 Ornithine carbamoyltransferase compare
PP_2793 -2.1 -2.3 Acyl-CoA dehydrogenase family protein compare
PP_0962 -1.9 -2.2 toluene-tolerance protein compare
PP_4642 -1.8 -1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_0888 -1.8 -1.2 Photosynthetic apparatus regulatory protein RegA compare
PP_3398 -1.8 -2.6 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4364 -1.7 -3.2 putative Anti-sigma F factor antagonist compare
PP_0685 -1.7 -2.6 conserved protein of unknown function compare
PP_3637 -1.7 -1.6 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1568 -1.7 -1.6 conserved protein of unknown function compare
PP_0063 -1.7 -3.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2152 -1.7 -2.9 glycerophosphoryl diester phosphodiesterase compare
PP_0627 -1.7 -1.7 conserved protein of unknown function compare
PP_1304 -1.6 -4.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2820 -1.6 -2.9 HTH-type transcriptional regulator nfxB compare
PP_0593 -1.6 -1.1 putative ribosome-binding factor compare
PP_1426 -1.6 -7.2 L-aspartate oxidase compare
PP_3590 -1.5 -5.2 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1348 -1.5 -3.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0959 -1.5 -1.4 phospholipid ABC transporter compare
PP_2720 -1.5 -1.6 conserved protein of unknown function compare
PP_0880 -1.4 -2.8 dipeptide ABC transporter - putative membrane subunit compare
PP_5311 -1.4 -5.4 putative signal transduction protein compare
PP_5475 -1.4 -1.8 conserved protein of unknown function compare
PP_1774 -1.3 -2.6 conserved exported protein of unknown function compare
PP_4952 -1.3 -1.5 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2388 -1.3 -2.9 Transporter, LysE family compare
PP_4045 -1.3 -2.4 conserved protein of unknown function compare
PP_4481 -1.3 -3.8 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5176 -1.3 -2.3 conserved protein of unknown function compare
PP_5035 -1.3 -3.7 Histidine utilization repressor compare
PP_0420 -1.3 -0.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5001 -1.3 -2.3 protease HslVU, ATPase component compare
PP_1142 -1.3 -1.2 conserved protein of unknown function compare
PP_1008 -1.2 -2.2 RNA polymerase subunit sigma-24 compare
PP_4262 -1.2 -1.4 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1508 -1.2 -2.8 conserved protein of unknown function compare
PP_3930 -1.2 -2.2 conserved exported protein of unknown function compare
PP_2029 -1.2 -2.1 von Willebrand factor type A domain protein compare
PP_5471 -1.2 -1.9 putative response regulator receiver protein compare
PP_1994 -1.2 -0.8 tRNA pseudouridine (38-40)synthase compare
PP_2499 -1.2 -1.6 conserved protein of unknown function compare
PP_0612 -1.2 -5.5 FAD-dependent glycine/D-amino acid oxidase compare
PP_1198 -1.1 -1.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0547 -1.1 -2.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5248 -1.1 -1.2 putative hydrolase compare
PP_3102 -1.1 -2.6 conserved protein of unknown function compare
PP_0440 -1.1 -1.8 Elongation factor Tu-A compare
PP_3726 -1.1 -1.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_4362 -1.1 -2.2 conserved protein of unknown function compare
PP_3098 -1.1 -1.3 conserved protein of unknown function compare
PP_5230 -1.1 -2.4 Tyrosine recombinase XerC compare
PP_5393 -1.1 -1.2 putative metal-binding chaperone compare
PP_3035 -1.1 -1.7 conserved protein of unknown function compare
PP_0346 -1.1 -4.2 putative Heptose kinase WapQ compare
PP_4696 -1.0 -0.7 Nitrogen regulation protein NR(I) compare
PP_4109 -1.0 -1.9 conserved protein of unknown function compare
PP_0852 -1.0 -3.0 Transcriptional regulator, Cro/CI family compare
PP_1493 -1.0 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4591 -1.0 -2.0 Ribonuclease D compare
PP_0914 -1.0 -4.8 GGDEF domain protein compare
PP_5008 -1.0 -1.1 Poly granule-associated protein compare
PP_2001 -1.0 -1.0 O-succinylhomoserine sulfhydrylase compare
PP_1692 -1.0 -2.1 conserved protein of unknown function compare
PP_2331 -1.0 -2.9 conserved membrane protein of unknown function compare
PP_2345 -1.0 -1.7 conserved exported protein of unknown function compare
PP_3408 -1.0 -2.3 cobalt transporter subunit A compare
PP_4480 -1.0 -3.4 arginine N-succinyltransferase, subunit alpha compare
PP_0585 -1.0 -1.2 putative metal-sensitive transcriptional regulator, MerR family compare
PP_2414 -1.0 -1.6 conserved exported protein of unknown function compare
PP_1269 -1.0 -1.0 Universal stress protein family compare
PP_0185 -1.0 -3.6 Positive alginate biosynthesis regulatory protein compare
PP_2098 -0.9 -5.3 D-alanyl-D-alanine carboxypeptidase compare
PP_4528 -0.9 -1.4 conserved protein of unknown function compare
PP_4008 -0.9 -1.3 ATP-dependent serine protease compare
PP_5456 -0.9 -1.4 conserved protein of unknown function compare
PP_4937 -0.9 -1.8 toluene tolerance protein compare
PP_1215 -0.9 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_4695 -0.9 -4.7 Sensory box histidine kinase compare
PP_5204 -0.9 -2.6 conserved protein of unknown function compare
PP_1739 -0.9 -2.1 conserved membrane protein of unknown function compare
PP_1088 -0.9 -0.9 Argininosuccinate synthase compare
PP_1559 -0.9 -2.2 Holin compare
PP_1862 -0.9 -1.8 conserved membrane protein of unknown function compare
PP_5198 -0.9 -1.6 conserved protein of unknown function compare
PP_0147 -0.9 -3.9 Citrate transporter conserved
PP_5533 -0.9 -1.1 conserved protein of unknown function compare
PP_1598 -0.9 -1.9 regulatory intramembrane protein RIP zinc protease compare
PP_2868 -0.9 -2.7 Transcriptional regulator, Cro/CI family compare
PP_3926 -0.9 -0.9 short-chain dehydrogenase compare
PP_4697 -0.9 -1.8 poly(A) polymerase compare
PP_1546 -0.9 -2.7 conserved protein of unknown function compare
PP_4066 -0.9 -1.7 methylglutaconyl-CoA hydratase compare
PP_4426 -0.9 -2.5 Amino acid ABC transporter, permease protein compare
PP_1217 -0.9 -1.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4778 -0.9 -1.9 23S rRNA pseudouridine 2457 synthase compare
PP_2999 -0.9 -1.1 Glyoxalase family protein compare
PP_2187 -0.8 -1.9 Universal stress protein family compare
PP_3064 -0.8 -1.1 Phage tail protein compare
PP_4961 -0.8 -1.2 putative Lipoprotein compare
PP_5313 -0.8 -1.4 DNA-binding protein HU-alpha compare
PP_0184 -0.8 -0.6 Argininosuccinate lyase compare
PP_4824 -0.8 -2.8 Sensor histidine kinase/response regulator compare
PP_3307 -0.8 -1.3 conserved protein of unknown function compare
PP_0241 -0.8 -1.3 Transporter compare
PP_3808 -0.8 -1.0 Antibiotic synthesis protein MbtH compare
PP_2160 -0.8 -2.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_5073 -0.8 -1.5 conserved exported protein of unknown function compare
PP_0135 -0.8 -2.0 conserved exported protein of unknown function compare
PP_1189 -0.8 -2.9 conserved hypothetical protein compare
PP_2118 -0.8 -1.9 conserved protein of unknown function compare
PP_2210 -0.8 -2.2 LysR family transcriptional regulator compare
PP_3105 -0.8 -1.0 conserved membrane protein of unknown function compare
PP_4264 -0.8 -2.9 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_2129 -0.8 -1.8 conserved protein of unknown function compare
PP_5628 -0.8 -1.2 conserved protein of unknown function compare
PP_0351 -0.8 -3.3 putative Transmembrane sensor protein compare
PP_1430 -0.8 -3.5 putative periplasmic serine endoprotease DegP-like compare
PP_4819 -0.8 -2.7 conserved protein of unknown function compare
PP_1021 -0.8 -1.9 DNA-binding transcriptional regulator compare
PP_0366 -0.8 -2.3 dethiobiotin synthetase compare
PP_2525 -0.8 -2.1 conserved protein of unknown function compare
PP_2858 -0.8 -1.6 conserved exported protein of unknown function compare
PP_t12 -0.8 -0.7 tRNA-Thr compare
PP_4316 -0.8 -2.3 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_3555 -0.8 -2.9 putative Transmembrane sensor compare
PP_0435 -0.8 -2.4 Peptidase, M23/M37 family compare
PP_1489 -0.8 -2.1 CheW domain protein compare
PP_1733 -0.8 -1.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_0240 -0.7 -1.7 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_0978 -0.7 -1.2 conserved protein of unknown function compare
PP_1346 -0.7 -1.8 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4223 -0.7 -1.6 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1787 -0.7 -2.5 conserved protein of unknown function compare
PP_3766 -0.7 -1.6 Lactoylglutathione lyase compare
PP_1417 -0.7 -2.0 putative Tricarboxylate transport protein TctB conserved
PP_0607 -0.7 -1.6 putative Type IV pili biogenesis protein FimT compare
PP_1575 -0.7 -1.4 conserved protein of unknown function compare
PP_0999 -0.7 -1.2 carbamate kinase compare
PP_5331 -0.7 -1.1 Long-chain acyl-CoA thioester hydrolase compare
PP_4247 -0.7 -0.9 Exonuclease compare
PP_5605 -0.7 -3.1 conserved exported protein of unknown function compare
PP_2646 -0.7 -1.4 conserved protein of unknown function compare
PP_2950 -0.7 -2.3 conserved protein of unknown function compare
PP_3880 -0.7 -1.0 conserved exported protein of unknown function compare
PP_0364 -0.7 -3.0 pimeloyl-[acp] methyl ester esterase compare
PP_2619 -0.7 -1.9 FHA domain protein compare
PP_3906 -0.7 -2.0 conserved protein of unknown function compare
PP_5619 -0.7 -1.9 protein of unknown function compare
PP_2348 -0.7 -1.7 Sensor histidine kinase compare
PP_0365 -0.7 -3.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4797 -0.7 -1.2 conserved protein of unknown function compare
PP_5448 -0.7 -2.0 conserved protein of unknown function compare
PP_1114 -0.7 -2.0 SEC-C domain protein compare
PP_5097 -0.7 -0.7 homoserine O-acetyltransferase compare
PP_5338 -0.7 -1.4 aspartate ammonia-lyase compare
PP_4966 -0.7 -1.2 transcriptional regulator of methionine metabolism compare
PP_2928 -0.7 -3.2 Saccharopine dehydrogenase compare
PP_3027 -0.7 -2.7 conserved protein of unknown function compare
PP_3946 -0.7 -0.9 HTH-type transcriptional repressor NicR compare
PP_0502 -0.7 -1.6 conserved protein of unknown function compare
PP_4018 -0.7 -1.8 Acetyltransferase, GNAT family compare
PP_3789 -0.7 -3.4 putative Efflux transporter compare
PP_4941 -0.7 -2.0 conserved exported protein of unknown function compare
PP_5604 -0.7 -1.0 putative subtilisin-like serine protease compare
PP_5748 -0.7 -0.8 cytochrome c heme lyase subunit compare
PP_3685 -0.7 -2.5 conserved protein of unknown function compare
PP_1268 -0.7 -0.9 putative HtrA suppressor protein sohA compare
PP_0649 -0.7 -1.5 MutT/nudix family protein compare
PP_2611 -0.7 -1.7 membrane protein of unknown function compare
PP_2475 -0.7 -1.9 Transcriptional regulator, TetR family compare
PP_1419 -0.7 -2.1 tricarboxylate-specific outer membrane porin conserved
PP_2107 -0.7 -1.0 conserved protein of unknown function compare
PP_4424 -0.7 -1.2 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_4890 -0.7 -0.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_1216 -0.7 -1.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1633 -0.7 -1.9 conserved exported protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For carbon source Trisodium citrate dihydrate across organisms