| | gene | name | fitness | t score | description | |
|---|
| b4313 | fimE | +1.9 | 13.3 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b1361 | ydaW | +1.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1685 | ydiH | +1.4 | 3.4 | predicted protein (RefSeq) | compare |
| b3863 | polA | +1.2 | 2.2 | DNA polymerase I (NCBI) | compare |
| b4503 | yafF | +1.2 | 2.2 | no description | compare |
| b1882 | cheY | +1.0 | 1.1 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b1728 | ydjM | +1.0 | 2.8 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b2096 | gatY | +0.7 | 3.0 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b1465 | narV | +0.6 | 2.1 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b1462 | b1462 | +0.6 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1553 | ydfP | +0.6 | 1.8 | Qin prophage; conserved protein (NCBI) | compare |
| b2531 | iscR | +0.6 | 1.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1070 | flgN | +0.6 | 1.3 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b0696 | kdpC | +0.6 | 3.2 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b0968 | yccX | +0.6 | 1.9 | predicted acylphosphatase (NCBI) | compare |
| b4647 | mokA | +0.6 | 0.7 | no description | compare |
| b1171 | b1171 | +0.6 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4535 | yniD | +0.6 | 1.2 | predicted protein (RefSeq) | compare |
| b1648 | b1648 | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4505 | insX | +0.5 | 1.2 | predicted IS protein (RefSeq) | compare |
| b2953 | yggU | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1758 | b1758 | +0.5 | 1.1 | putative cytochrome oxidase (VIMSS) | compare |
| b1010 | ycdK | +0.5 | 3.3 | hypothetical protein (NCBI) | compare |
| b1134 | ymfB | +0.5 | 2.1 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b2080 | b2080 | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1382 | ynbE | +0.5 | 1.2 | predicted lipoprotein (NCBI) | compare |
| b1387 | maoC | +0.5 | 3.0 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b1085 | b1085 | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0937 | ssuE | +0.5 | 2.3 | NAD(P)H-dependent FMN reductase (NCBI) | compare |
| b1778 | yeaA | +0.5 | 1.5 | methionine sulfoxide reductase B (NCBI) | compare |
| b0746 | valZ | +0.5 | 1.8 | tRNA-Val (NCBI) | compare |
| b4144 | yjeI | +0.5 | 3.2 | orf, hypothetical protein (VIMSS) | compare |
| b1865 | nudB | +0.5 | 1.3 | dATP pyrophosphohydrolase (NCBI) | compare |
| b2093 | gatB | +0.5 | 2.7 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b2058 | wcaB | +0.5 | 1.0 | predicted acyl transferase (NCBI) | compare |
| b2434 | b2434 | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2212 | alkB | +0.5 | 2.4 | oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) | compare |
| b3950 | frwB | +0.5 | 2.2 | predicted enzyme IIB component of PTS (NCBI) | compare |
| b1760 | ynjH | +0.5 | 1.7 | hypothetical protein (NCBI) | compare |
| b0580 | ybdJ | +0.5 | 1.1 | predicted inner membrane protein (NCBI) | compare |
| b2582 | trxC | +0.5 | 2.1 | thioredoxin 2 (NCBI) | compare |
| b2911 | ssrS | +0.5 | 1.4 | 6S regulatory RNA (NCBI) | compare |
| b1671 | ydhX | +0.5 | 1.7 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b4394 | yjjX | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b4546 | ypeB | +0.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b1841 | yobA | +0.5 | 1.4 | hypothetical protein (NCBI) | compare |
| b1418 | cybB | +0.5 | 1.4 | cytochrome b(561) (VIMSS) | compare |
| b1321 | ycjX | +0.5 | 2.6 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | compare |
| b4614 | sokA | +0.5 | 1.5 | no description | compare |
| b1242 | ychE | +0.5 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b1400 | paaY | +0.5 | 1.9 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b4513 | kdpF | +0.5 | 1.9 | potassium ion accessory transporter subunit (NCBI) | compare |
| b2309 | hisJ | +0.5 | 2.7 | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | compare |
| b4675 | yoaJ | +0.5 | 1.4 | expressed protein (RefSeq) | compare |
| b2934 | cmtB | +0.4 | 0.6 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1591 | b1591 | +0.4 | 0.9 | putative oxidoreductase component (VIMSS) | compare |
| b2007 | yeeX | +0.4 | 1.3 | conserved protein (RefSeq) | compare |
| b4246 | pyrL | +0.4 | 1.4 | pyrBI operon leader peptide (NCBI) | compare |
| b1669 | ydhT | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b1278 | pgpB | +0.4 | 1.5 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b0191 | yaeJ | +0.4 | 2.6 | hypothetical protein (NCBI) | compare |
| b4408 | csrB | +0.4 | 2.4 | CsrA-binding sRNA, antagonizing CsrA regulation (NCBI) | compare |
| b1640 | ydhH | +0.4 | 2.0 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b2409 | yfeR | +0.4 | 2.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1150 | ymfR | +0.4 | 0.7 | e14 prophage; predicted protein (NCBI) | compare |
| b4436 | ryeC | +0.4 | 0.8 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1904 | yecR | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b2005 | yeeV | +0.4 | 1.8 | CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b2003 | yeeT | +0.4 | 1.1 | CP4-44 prophage; predicted protein (NCBI) | compare |
| b4493 | gapC | +0.4 | 1.0 | no description | compare |
| b4406 | yaeP | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b1231 | tyrT | +0.4 | 0.7 | tRNA-Tyr (NCBI) | compare |
| b0352 | mhpE | +0.4 | 2.3 | 4-hydroxy-2-ketovalerate aldolase (NCBI) | compare |
| b1299 | puuR | +0.4 | 2.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0841 | ybjG | +0.4 | 2.0 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b4653 | yicT | +0.4 | 1.4 | no description | compare |
| b4330 | yjiH | +0.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1295 | ymjA | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b1566 | flxA | +0.4 | 1.9 | Qin prophage; predicted protein (NCBI) | compare |
| b0998 | torD | +0.4 | 0.7 | chaperone protein TorD (NCBI) | compare |
| b1185 | dsbB | +0.4 | 1.8 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1488 | ddpX | +0.4 | 1.8 | D-ala-D-ala dipeptidase, Zn-dependent (NCBI) | compare |
| b4480 | hdfR | +0.4 | 2.3 | transcriptional regulator HdfR (NCBI) | compare |
| b1075 | flgD | +0.4 | 2.1 | flagellar basal body rod modification protein D (NCBI) | compare |
| b0995 | torR | +0.4 | 2.0 | DNA-binding response regulator in two-component regulatory system with TorS (NCBI) | compare |
| b4702 | mgtL | +0.4 | 0.5 | regulatory leader peptide for mgtA (NCBI) | compare |
| b2886 | ygfS | +0.4 | 2.3 | putative oxidoreductase, Fe-S subunit (VIMSS) | compare |
| b2832 | ygdQ | +0.4 | 1.8 | predicted inner membrane protein (NCBI) | compare |
| b2079 | baeR | +0.4 | 2.8 | DNA-binding response regulator in two-component regulatory system with BaeS (NCBI) | compare |
| b3354 | yheU | +0.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b4381 | deoC | +0.4 | 1.8 | deoxyribose-phosphate aldolase (NCBI) | compare |
| b1667 | ydhR | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1593 | b1593 | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4511 | ybdZ | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b1573 | ydfC | +0.4 | 0.6 | Qin prophage; predicted protein (RefSeq) | compare |
| b4596 | yciZ | +0.4 | 1.0 | hypothetical protein (RefSeq) | compare |
| b2186 | yejK | +0.4 | 2.9 | nucleoid-associated protein NdpA (NCBI) | compare |
| b4445 | omrB | +0.4 | 1.5 | sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq (RefSeq) | compare |
| b1380 | ldhA | +0.4 | 0.8 | D-lactate dehydrogenase (NCBI) | compare |
| b1560 | ydfU | +0.4 | 1.9 | Qin prophage; predicted protein (RefSeq) | compare |
| b2726 | hypA | +0.4 | 2.5 | protein involved in nickel insertion into hydrogenases 3 (NCBI) | compare |
| b0957 | ompA | +0.4 | 1.6 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b0975 | hyaD | +0.3 | 1.5 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |
| b1699 | ydiS | +0.3 | 1.5 | predicted oxidoreductase with FAD/NAD(P)-binding domain (NCBI) | compare |
| b3860 | dsbA | +0.3 | 2.7 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1673 | ydhV | +0.3 | 1.8 | predicted oxidoreductase (NCBI) | compare |
| b3676 | yidH | +0.3 | 1.5 | conserved inner membrane protein (NCBI) | compare |
| b1883 | cheB | +0.3 | 1.3 | chemotaxis-specific methylesterase (NCBI) | compare |
| b1074 | flgC | +0.3 | 1.0 | flagellar basal-body rod protein C (NCBI) | compare |
| b1901 | araF | +0.3 | 2.0 | L-arabinose transporter subunit (NCBI) | compare |
| b1441 | ydcT | +0.3 | 1.5 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b1945 | fliM | +0.3 | 2.5 | flagellar motor switch protein M (NCBI) | compare |
| b2829 | ptsP | +0.3 | 3.0 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1890 | motA | +0.3 | 1.5 | flagellar motor protein MotA (NCBI) | compare |
| b2426 | ucpA | +0.3 | 1.4 | putative oxidoreductase (VIMSS) | compare |
| b1296 | ycjJ | +0.3 | 1.9 | putative amino acid/amine transport protein (VIMSS) | compare |
| b3280 | yrdB | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b1383 | ydbL | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1562 | hokD | +0.3 | 1.2 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b0880 | cspD | +0.3 | 1.1 | cold shock protein homolog (NCBI) | compare |
| b4363 | yjjB | +0.3 | 1.5 | conserved inner membrane protein (RefSeq) | compare |
| b1153 | ymfQ | +0.3 | 1.8 | e14 prophage; conserved protein (NCBI) | compare |
| b1286 | rnb | +0.3 | 1.2 | exoribonuclease II (NCBI) | compare |
| b2432 | yfeY | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b1818 | manY | +0.3 | 1.2 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b2381 | ypdB | +0.3 | 2.3 | predicted response regulator in two-component system withYpdA (NCBI) | compare |
| b1939 | fliG | +0.3 | 1.6 | flagellar motor switch protein G (NCBI) | compare |
| b2011 | sbcB | +0.3 | 2.3 | exonuclease I (NCBI) | compare |
| b1282 | yciH | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b3868 | glnG | +0.3 | 2.2 | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) | compare |
| b1749 | xthA | +0.3 | 1.6 | exonuclease III (NCBI) | compare |
| b4093 | phnO | +0.3 | 2.3 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b1217 | chaB | +0.3 | 0.6 | cation transport regulator (NCBI) | compare |
| b1620 | malI | +0.3 | 0.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4585 | sroB | +0.3 | 0.6 | Novel sRNA, function unknown (RefSeq) | compare |
| b1767 | ansA | +0.3 | 2.1 | cytoplasmic asparaginase I (NCBI) | compare |
| b1135 | ymfC | +0.3 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b4360 | yjjA | +0.3 | 1.9 | putative glycoprotein/receptor (VIMSS) | compare |
| b1622 | malY | +0.3 | 1.7 | bifunctional beta-cystathionase, PLP-dependent/ regulator of maltose regulon (NCBI) | compare |
| b1601 | ydgG | +0.3 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b1270 | btuR | +0.3 | 1.2 | cob(I)yrinic acid a,c-diamide adenosyltransferase (NCBI) | compare |
| b0927 | ycbL | +0.3 | 1.8 | predicted metal-binding enzyme (NCBI) | compare |
| b2094 | gatA | +0.3 | 1.6 | galactitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b2060 | b2060 | +0.3 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0226 | dinJ | +0.3 | 1.3 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b1960 | vsr | +0.3 | 1.3 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b0232 | yafN | +0.3 | 0.3 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1248 | b1248 | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1511 | ydeV | +0.3 | 1.6 | putative kinase (VIMSS) | compare |
| b2420 | yfeS | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b1036 | ycdZ | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1847 | yebF | +0.3 | 0.8 | predicted protein (RefSeq) | compare |
| b1279 | yciS | +0.3 | 0.5 | conserved inner membrane protein (NCBI) | compare |
| b2421 | cysM | +0.3 | 1.7 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b1302 | puuE | +0.3 | 1.9 | GABA aminotransferase, PLP-dependent (NCBI) | compare |
| b0596 | entA | +0.3 | 1.7 | 2,3-dihydroxybenzoate-2,3-dehydrogenase (NCBI) | compare |
| b2506 | yfgI | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b0225 | yafQ | +0.3 | 0.9 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b3029 | ygiN | +0.3 | 0.9 | quinol monooxygenase (NCBI) | compare |
| b1819 | manZ | +0.3 | 1.3 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b1415 | aldA | +0.3 | 2.1 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b2102 | yegX | +0.3 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b0606 | ahpF | +0.3 | 2.1 | alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS) | compare |
| b2066 | udk | +0.3 | 1.7 | uridine/cytidine kinase (VIMSS) | compare |
| b0092 | ddlB | +0.3 | 1.3 | D-alanylalanine synthetase (NCBI) | compare |
| b1301 | puuB | +0.3 | 1.4 | gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) | compare |
| b1358 | ydaT | +0.3 | 0.6 | Rac prophage; predicted protein (NCBI) | compare |
| b0822 | ybiV | +0.3 | 1.7 | predicted hydrolase (NCBI) | compare |
| b1526 | yneJ | +0.3 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3129 | sohA | +0.3 | 1.4 | predicted regulator (NCBI) | compare |
| b3074 | ygjH | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1946 | fliN | +0.3 | 1.7 | flagellar motor switch protein (NCBI) | compare |
| b1930 | yedF | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b1523 | yneG | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b1606 | folM | +0.3 | 2.0 | short chain dehydrogenase (NCBI) | compare |
| b1512 | lsrR | +0.3 | 1.7 | lsr operon transcriptional repressor (NCBI) | compare |
| b1147 | ymfL | +0.3 | 0.7 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0249 | ykfF | +0.3 | 1.2 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b2804 | fucU | +0.3 | 0.8 | L-fucose mutarotase (NCBI) | compare |
| b0013 | yaaI | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b4701 | sokX | +0.3 | 0.4 | sok-related sRNA, function unknown (RefSeq) | compare |
| b1013 | ycdC | +0.3 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4332 | yjiJ | +0.3 | 2.1 | predicted inner membrane protein (NCBI) | compare |
| b2771 | ygcS | +0.3 | 1.3 | putative transport protein (VIMSS) | compare |
| b1610 | tus | +0.3 | 1.8 | DNA replication terminus site-binding protein (NCBI) | compare |
| b1259 | yciG | +0.3 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b3106 | yhaK | +0.3 | 1.4 | predicted pirin-related protein (NCBI) | compare |
| b2266 | elaB | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b0864 | artP | +0.3 | 1.5 | arginine transporter subunit (NCBI) | compare |
| b1081 | flgJ | +0.3 | 1.4 | flagellar biosynthesis protein FlgJ (NCBI) | compare |
| b2237 | inaA | +0.3 | 0.8 | hypothetical protein (NCBI) | compare |
| b3443 | yrhA | +0.3 | 0.4 | orf, hypothetical protein (VIMSS) | compare |
| b2377 | yfdY | +0.3 | 1.0 | predicted inner membrane protein (NCBI) | compare |
| b3228 | sspB | +0.3 | 1.6 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b3999 | yjaG | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b4649 | ysaD | +0.3 | 1.6 | no description | compare |
| b0555 | ybcS | +0.3 | 1.8 | DLP12 prophage; predicted lysozyme (NCBI) | compare |
| b4110 | yjcZ | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1199 | dhaL | +0.3 | 1.5 | dihydroxyacetone kinase, C-terminal domain (NCBI) | compare |
| b1556 | b1556 | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |