Experiment set45S717 for Pseudomonas putida KT2440

Compare to:

TIme6-nophage

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.2 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -5.9 -8.1 Branched-chain-amino-acid aminotransferase compare
PP_0290 -5.3 -8.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5014 -4.4 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0966 -4.3 -12.2 Histidinol dehydrogenase compare
PP_0289 -4.2 -10.0 Imidazoleglycerol-phosphate dehydratase compare
PP_5128 -4.0 -8.1 Dihydroxy-acid dehydratase compare
PP_4678 -4.0 -16.2 Ketol-acid reductoisomerase compare
PP_0967 -4.0 -11.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5015 -3.9 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0292 -3.9 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0184 -3.8 -8.5 Argininosuccinate lyase compare
PP_1079 -3.8 -6.5 Ornithine carbamoyltransferase compare
PP_4890 -3.7 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_5289 -3.7 -7.1 Acetylglutamate kinase compare
PP_1088 -3.6 -14.0 Argininosuccinate synthase compare
PP_4909 -3.5 -2.4 phosphoserine phosphatase compare
PP_0083 -3.4 -9.0 tryptophan synthase beta chain compare
PP_0082 -3.4 -8.4 tryptophan synthase alpha chain compare
PP_5185 -3.4 -8.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5337 -3.2 -6.0 LysR family transcriptional regulator compare
PP_4680 -3.0 -15.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0965 -3.0 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5155 -2.9 -4.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5338 -2.9 -4.3 aspartate ammonia-lyase compare
PP_0495 -2.8 -7.4 type 1 L-asparaginase compare
PP_4126 -2.8 -2.7 NADH-quinone oxidoreductase subunit I compare
PP_4699 -2.7 -5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0362 -2.5 -14.0 Biotin synthase compare
PP_1988 -2.4 -10.4 3-isopropylmalate dehydrogenase compare
PP_0420 -2.4 -12.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0291 -2.2 -2.9 conserved protein of unknown function compare
PP_4679 -2.2 -8.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2378 -2.1 -2.8 Fe/S biogenesis protein NfuA compare
PP_0421 -2.1 -7.6 Anthranilate phosphoribosyltransferase compare
PP_1995 -2.0 -9.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1985 -2.0 -4.1 3-isopropylmalate dehydratase large subunit compare
PP_5216 -1.9 -1.8 exopolyphosphatase compare
PP_0363 -1.9 -11.0 8-amino-7-oxononanoate synthase compare
PP_5350 -1.9 -4.1 Transcriptional regulator, RpiR family compare
PP_5706 -1.9 -2.8 Sec translocation complex - SecG subunit compare
PP_0846 -1.9 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_1198 -1.8 -2.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0417 -1.8 -13.9 Anthranilate synthase component 1 compare
PP_0365 -1.8 -7.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0364 -1.8 -8.6 pimeloyl-[acp] methyl ester esterase compare
PP_1986 -1.8 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_4517 -1.7 -3.3 conserved protein of unknown function compare
PP_0366 -1.6 -7.4 dethiobiotin synthetase compare
PP_4379 -1.6 -4.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4942 -1.6 -3.3 conserved protein of unknown function compare
PP_0261 -1.6 -4.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4993 -1.6 -5.0 Glutathione synthetase compare
PP_4984 -1.6 -8.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0833 -1.6 -1.8 queuine tRNA-ribosyltransferase compare
PP_5097 -1.5 -11.0 homoserine O-acetyltransferase compare
PP_t29 -1.5 -2.9 tRNA-Ala compare
PP_0422 -1.5 -4.5 Indole-3-glycerol phosphate synthase compare
PP_2371 -1.4 -2.3 Sulphite reductase hemoprotein, beta subunit compare
PP_4917 -1.4 -4.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4941 -1.4 -6.3 conserved exported protein of unknown function compare
PP_2379 -1.3 -4.4 putative cytochrome oxidase biogenesis protein compare
PP_4700 -1.3 -0.9 pantothenate synthetase compare
PP_5328 -1.3 -1.6 putative phosphate transport system permease protein compare
PP_2088 -1.3 -2.7 RNA polymerase sigma factor SigX compare
PP_5098 -1.2 -6.9 methionine biosynthesis protein MetW compare
PP_5303 -1.2 -5.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2001 -1.2 -7.8 O-succinylhomoserine sulfhydrylase compare
PP_1362 -1.2 -3.8 pyruvate kinase II compare
PP_1025 -1.2 -7.6 2-isopropylmalate synthase compare
PP_3245 -1.2 -1.8 conserved protein of unknown function compare
PP_5317 -1.2 -1.8 Probable chorismate pyruvate-lyase compare
PP_4122 -1.2 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4338 -1.1 -6.0 Chemotaxis histidine kinase CheA compare
PP_2972 -1.1 -2.8 conserved protein of unknown function compare
PP_1111 -1.1 -6.1 putative Synthetase compare
PP_4121 -1.1 -3.7 NADH-quinone oxidoreductase subunit C/D compare
PP_1367 -1.1 -5.3 formyltetrahydrofolate hydrolase compare
PP_1917 -1.1 -6.0 4-amino-4-deoxychorismate lyase compare
PP_5571 -1.1 -1.9 conserved protein of unknown function compare
PP_2328 -1.1 -2.6 Phosphoadenosine phosphosulfate reductase compare
PP_1878 -1.0 -6.5 conserved protein of unknown function compare
PP_4944 -1.0 -2.6 Carbamoyltransferase compare
PP_5028 -1.0 -3.2 proline iminopeptidase compare
PP_5453 -1.0 -2.1 conserved protein of unknown function compare
PP_2414 -1.0 -3.1 conserved exported protein of unknown function compare
PP_4004 -1.0 -3.3 DNA translocase FtsK compare
PP_4069 -1.0 -3.2 conserved protein of unknown function compare
PP_2329 -1.0 -6.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0339 -1.0 -0.9 Pyruvate dehydrogenase E1 component compare
PP_4129 -1.0 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3899 -1.0 -1.9 conserved protein of unknown function, hicB family compare
PP_3726 -1.0 -1.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_1783 -1.0 -1.4 dTDP-glucose pyrophosphorylase compare
PP_1410 -1.0 -1.6 conserved protein of unknown function compare
PP_0719 -1.0 -0.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4213 -1.0 -2.0 putative dipeptidase compare
PP_4273 -0.9 -2.0 Transcriptional regulator, MerR family compare
PP_4131 -0.9 -3.7 NADH-quinone oxidoreductase subunit N compare
PP_4546 -0.9 -3.0 ATP-dependent helicase HrpA compare
PP_0412 -0.9 -2.9 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_t13 -0.9 -2.2 tRNA-Lys compare
PP_0411 -0.9 -2.7 Polyamine ABC transporter, ATP-binding protein compare
PP_4124 -0.9 -3.0 NADH-quinone oxidoreductase subunit G compare
PP_t10 -0.9 -1.9 tRNA-Pro compare
PP_4892 -0.9 -4.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4058 -0.9 -5.7 1,4-alpha-glucan branching enzyme compare
PP_2031 -0.9 -2.6 conserved protein of unknown function compare
PP_2402 -0.8 -1.5 putative Sensor histidine kinase compare
PP_5331 -0.8 -1.9 Long-chain acyl-CoA thioester hydrolase compare
PP_1733 -0.8 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_0345 -0.8 -2.8 putative Heptose kinase WapP compare
PP_0111 -0.8 -5.2 Electron transport protein SCO1/SenC compare
PP_4642 -0.8 -1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_1176 -0.8 -2.0 conserved protein of unknown function compare
PP_1764 -0.8 -2.2 Phosphoglycolate phosphatase 2 compare
PP_5456 -0.8 -1.8 conserved protein of unknown function compare
PP_4208 -0.8 -4.1 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_3551 -0.8 -2.0 DNA-binding response regulator, LuxR family compare
PP_5329 -0.8 -1.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0065 -0.8 -1.9 NAD-binding component of TrK potassium transporter compare
PP_3649 -0.8 -2.9 Transcriptional regulator, GntR family compare
PP_5327 -0.8 -2.0 putative phosphate ABC transporter, permease subunit compare
PP_0393 -0.8 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1225 -0.8 -3.4 7-carboxy-7-deazaguanine synthase compare
PP_1468 -0.8 -1.7 Tyrosine recombinase XerD compare
PP_2028 -0.7 -3.1 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4214 -0.7 -2.0 pyoverdine biosynthesis related protein compare
PP_4891 -0.7 -2.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1552 -0.7 -1.9 putative Phage replication protein compare
PP_4392 -0.7 -4.9 chemotaxis protein methyltransferase compare
PP_1110 -0.7 -2.3 serine acetyltransferase compare
PP_4268 -0.7 -1.4 nucleoid-associated broad specificity regulator compare
PP_3052 -0.7 -1.3 conserved protein of unknown function compare
PP_4952 -0.7 -1.3 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1415 -0.7 -2.2 putative membrane associated enzyme subunit compare
PP_5528 -0.7 -1.1 conserved protein of unknown function compare
PP_0978 -0.7 -2.1 conserved protein of unknown function compare
PP_2327 -0.7 -2.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4251 -0.7 -2.5 cytochrome c oxidase subunit, cbb3-type compare
PP_4120 -0.7 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_2306 -0.7 -1.8 conserved exported protein of unknown function compare
PP_2302 -0.6 -2.8 DNA-binding, ATP-dependent protease compare
PP_0497 -0.6 -3.3 Transcriptional regulator, Cro/CI family compare
PP_1207 -0.6 -2.7 conserved protein of unknown function compare
PP_4532 -0.6 -1.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1906 -0.6 -1.5 ribosomal large subunit pseudouridine synthase C compare
PP_3190 -0.6 -2.4 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_1963 -0.6 -3.2 conserved protein of unknown function compare
PP_3460 -0.6 -2.0 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_5712 -0.6 -2.0 conserved protein of unknown function compare
PP_5035 -0.6 -3.8 Histidine utilization repressor compare
PP_4874 -0.6 -1.0 50S ribosomal protein L9 compare
PP_3063 -0.6 -2.8 Pyocin R2_PP, tail formation protein compare
PP_0135 -0.6 -2.8 conserved exported protein of unknown function compare
PP_1034 -0.6 -4.6 multicopper oxidase compare
PP_0832 -0.6 -1.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4340 -0.6 -2.0 response regulator for chemotactic signal transduction compare
PP_3999 -0.6 -1.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4481 -0.6 -3.8 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_0260 -0.6 -3.1 ADP-sugar pyrophosphorylase compare
PP_3315 -0.6 -2.4 conserved membrane protein of unknown function compare
PP_0151 -0.6 -2.3 conserved exported protein of unknown function compare
PP_0063 -0.6 -2.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4215 -0.6 -1.4 pyoverdine biosynthesis related protein compare
PP_0001 -0.6 -1.1 probable chromosome-partitioning protein compare
PP_5045 -0.6 -2.1 tRNA sulfurtransferase compare
PP_2646 -0.6 -1.9 conserved protein of unknown function compare
PP_4008 -0.6 -2.9 ATP-dependent serine protease compare
PP_4988 -0.6 -2.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1994 -0.6 -1.1 tRNA pseudouridine (38-40)synthase compare
PP_2999 -0.6 -1.1 Glyoxalase family protein compare
PP_2029 -0.6 -2.2 von Willebrand factor type A domain protein compare
PP_4204 -0.6 -2.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1217 -0.6 -2.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2900 -0.6 -1.8 conserved protein of unknown function compare
PP_1734 -0.6 -2.0 Probable septum site-determining protein MinC compare
PP_0630 -0.6 -0.9 DNA gyrase inhibitor YacG compare
PP_4824 -0.6 -2.9 Sensor histidine kinase/response regulator compare
PP_4914 -0.5 -2.8 putative phytase-like protein compare
PP_4332 -0.5 -2.4 Chemotaxis protein CheW compare
PP_0963 -0.5 -1.8 putative BolA family protein compare
PP_1142 -0.5 -0.9 conserved protein of unknown function compare
PP_1346 -0.5 -2.6 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_5248 -0.5 -0.9 putative hydrolase compare
PP_2718 -0.5 -1.1 arsenic resistance transcriptional regulator compare
PP_3539 -0.5 -1.2 putative Transcriptional regulator compare
PP_3312 -0.5 -0.8 putative Heat shock protein compare
PP_0122 -0.5 -1.9 conserved exported protein of unknown function compare
PP_4098 -0.5 -1.3 UvrABC system protein C compare
PP_3194 -0.5 -2.0 conserved protein of unknown function compare
PP_5198 -0.5 -1.5 conserved protein of unknown function compare
PP_3328 -0.5 -1.7 putative Ring-cleaving dioxygenase compare
PP_4345 -0.5 -3.2 Transcriptional regulator, GntR family compare
PP_4836 -0.5 -1.8 conserved exported protein of unknown function compare
PP_1451 -0.5 -2.5 conserved exported protein of unknown function compare
PP_0401 -0.5 -1.5 Ribosomal RNA small subunit methyltransferase A compare
PP_0181 -0.5 -2.4 conserved protein of unknown function compare
PP_5247 -0.5 -2.4 conserved protein of unknown function compare
PP_4393 -0.5 -2.8 putative chemotaxis protein compare


Specific Phenotypes

For 1 genes in this experiment