Experiment set45S697 for Pseudomonas putida KT2440

Compare to:

Time6-FRS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.3 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -5.6 -10.0 Branched-chain-amino-acid aminotransferase compare
PP_0290 -5.3 -8.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4099 -5.1 -30.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0289 -5.0 -8.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0967 -4.8 -11.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4678 -4.6 -16.8 Ketol-acid reductoisomerase compare
PP_0292 -4.6 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5014 -4.6 -4.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_1198 -4.4 -3.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1650 -4.3 -15.1 Sensor protein GacS compare
PP_0966 -4.3 -12.4 Histidinol dehydrogenase compare
PP_5128 -4.3 -7.9 Dihydroxy-acid dehydratase compare
PP_1428 -4.3 -2.9 Sigma factor AlgU negative regulatory protein compare
PP_5015 -4.3 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0082 -4.1 -9.0 tryptophan synthase alpha chain compare
PP_5337 -3.9 -4.6 LysR family transcriptional regulator compare
PP_4890 -3.8 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_5289 -3.6 -5.3 Acetylglutamate kinase compare
PP_5185 -3.6 -8.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4909 -3.5 -3.4 phosphoserine phosphatase compare
PP_1079 -3.5 -7.6 Ornithine carbamoyltransferase compare
PP_4680 -3.4 -15.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -3.4 -14.0 Argininosuccinate synthase compare
PP_0965 -3.3 -9.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0184 -3.1 -7.6 Argininosuccinate lyase compare
PP_4917 -3.1 -6.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1988 -3.0 -9.5 3-isopropylmalate dehydrogenase compare
PP_5155 -3.0 -4.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4699 -2.9 -6.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0083 -2.9 -9.1 tryptophan synthase beta chain compare
PP_4944 -2.8 -5.9 Carbamoyltransferase compare
PP_0495 -2.7 -7.7 type 1 L-asparaginase compare
PP_4679 -2.6 -6.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0420 -2.5 -11.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5338 -2.5 -4.6 aspartate ammonia-lyase compare
PP_0291 -2.5 -3.2 conserved protein of unknown function compare
PP_1986 -2.5 -4.9 3-isopropylmalate dehydratase small subunit compare
PP_2402 -2.4 -3.2 putative Sensor histidine kinase compare
PP_4941 -2.4 -8.6 conserved exported protein of unknown function compare
PP_1985 -2.3 -6.2 3-isopropylmalate dehydratase large subunit compare
PP_2378 -2.3 -3.1 Fe/S biogenesis protein NfuA compare
PP_0421 -2.3 -8.2 Anthranilate phosphoribosyltransferase compare
PP_2379 -2.2 -6.7 putative cytochrome oxidase biogenesis protein compare
PP_0362 -2.2 -13.2 Biotin synthase compare
PP_0540 -2.2 -9.7 conserved inner membrane protein compare
PP_1995 -2.1 -9.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0364 -2.1 -9.5 pimeloyl-[acp] methyl ester esterase compare
PP_0365 -2.1 -10.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0417 -2.0 -13.9 Anthranilate synthase component 1 compare
PP_0366 -1.9 -7.6 dethiobiotin synthetase compare
PP_4942 -1.9 -3.2 conserved protein of unknown function compare
PP_4379 -1.8 -4.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0422 -1.8 -6.4 Indole-3-glycerol phosphate synthase compare
PP_5303 -1.7 -6.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2371 -1.7 -2.7 Sulphite reductase hemoprotein, beta subunit compare
PP_0363 -1.6 -9.8 8-amino-7-oxononanoate synthase compare
PP_5097 -1.6 -11.0 homoserine O-acetyltransferase compare
PP_5098 -1.6 -7.4 methionine biosynthesis protein MetW compare
PP_4215 -1.6 -4.8 pyoverdine biosynthesis related protein compare
PP_5328 -1.6 -2.0 putative phosphate transport system permease protein compare
PP_4122 -1.6 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2328 -1.5 -3.4 Phosphoadenosine phosphosulfate reductase compare
PP_4700 -1.5 -1.0 pantothenate synthetase compare
PP_1468 -1.4 -2.6 Tyrosine recombinase XerD compare
PP_2001 -1.4 -8.4 O-succinylhomoserine sulfhydrylase compare
PP_0393 -1.4 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4984 -1.4 -8.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2137 -1.4 -4.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_1025 -1.4 -8.6 2-isopropylmalate synthase compare
PP_0261 -1.4 -4.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4129 -1.4 -3.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4804 -1.4 -2.5 RlpA-like lipoprotein compare
PP_4874 -1.4 -1.9 50S ribosomal protein L9 compare
PP_0833 -1.3 -1.7 queuine tRNA-ribosyltransferase compare
PP_1344 -1.3 -2.4 conserved protein of unknown function compare
PP_1783 -1.3 -1.7 dTDP-glucose pyrophosphorylase compare
PP_4120 -1.3 -3.0 NADH-quinone oxidoreductase subunit B compare
PP_2388 -1.2 -4.1 Transporter, LysE family compare
PP_0339 -1.2 -0.8 Pyruvate dehydrogenase E1 component compare
PP_1367 -1.2 -5.4 formyltetrahydrofolate hydrolase compare
PP_4517 -1.2 -2.6 conserved protein of unknown function compare
PP_0406 -1.2 -2.8 Nucleotidyltransferase family protein compare
PP_2903 -1.2 -2.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2088 -1.1 -2.7 RNA polymerase sigma factor SigX compare
PP_0888 -1.1 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_5028 -1.1 -3.6 proline iminopeptidase compare
PP_5329 -1.1 -1.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4546 -1.1 -3.7 ATP-dependent helicase HrpA compare
PP_1355 -1.1 -6.8 Muropeptide permease AmpG compare
PP_2341 -1.1 -2.4 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_5582 -1.1 -1.7 conserved protein of unknown function compare
PP_4058 -1.1 -7.3 1,4-alpha-glucan branching enzyme compare
PP_0065 -1.1 -3.0 NAD-binding component of TrK potassium transporter compare
PP_1215 -1.1 -2.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_2847 -1.1 -2.0 Urease accessory protein UreJ compare
PP_0435 -1.0 -5.3 Peptidase, M23/M37 family compare
PP_0905 -1.0 -1.8 conserved exported protein of unknown function compare
PP_3946 -1.0 -1.6 HTH-type transcriptional repressor NicR compare
PP_1111 -1.0 -5.1 putative Synthetase compare
PP_4993 -1.0 -3.1 Glutathione synthetase compare
PP_1099 -1.0 -1.7 Cold shock protein CapB compare
PP_3999 -1.0 -2.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2329 -1.0 -6.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4126 -1.0 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_3241 -0.9 -1.6 conserved exported protein of unknown function compare
PP_1654 -0.9 -0.6 cysteine synthase B compare
PP_5216 -0.9 -1.4 exopolyphosphatase compare
PP_3902 -0.9 -2.6 conserved protein of unknown function compare
PP_5350 -0.9 -2.6 Transcriptional regulator, RpiR family compare
PP_5317 -0.9 -2.3 Probable chorismate pyruvate-lyase compare
PP_4131 -0.9 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_4937 -0.9 -3.1 toluene tolerance protein compare
PP_1917 -0.8 -4.9 4-amino-4-deoxychorismate lyase compare
PP_4696 -0.8 -3.2 Nitrogen regulation protein NR(I) compare
PP_2611 -0.8 -2.9 membrane protein of unknown function compare
PP_1733 -0.8 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_4004 -0.8 -2.6 DNA translocase FtsK compare
PP_0411 -0.8 -2.1 Polyamine ABC transporter, ATP-binding protein compare
PP_2414 -0.8 -1.7 conserved exported protein of unknown function compare
PP_4121 -0.8 -3.0 NADH-quinone oxidoreductase subunit C/D compare
PP_4787 -0.8 -2.3 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1002 -0.8 -2.7 arginine/ornithine antiporter compare
PP_1775 -0.8 -3.6 Metallo-beta-lactamase family protein compare
PP_4214 -0.8 -1.9 pyoverdine biosynthesis related protein compare
PP_1034 -0.8 -5.7 multicopper oxidase compare
PP_5546 -0.8 -1.7 conserved protein of unknown function compare
PP_1110 -0.8 -2.8 serine acetyltransferase compare
PP_4392 -0.8 -4.6 chemotaxis protein methyltransferase compare
PP_4504 -0.8 -1.6 conserved exported protein of unknown function compare
PP_4338 -0.8 -4.5 Chemotaxis histidine kinase CheA compare
PP_4213 -0.8 -1.5 putative dipeptidase compare
PP_5310 -0.8 -3.5 junction-specific ATP-dependent DNA helicase compare
PP_4066 -0.8 -2.1 methylglutaconyl-CoA hydratase compare
PP_0025 -0.7 -1.3 hypothetical protein compare
PP_2144 -0.7 -1.7 Transcriptional regulator, TetR family compare
PP_0035 -0.7 -1.1 putative bactoprenol-linked glycose transferase compare
PP_5549 -0.7 -1.8 conserved protein of unknown function compare
PP_1734 -0.7 -2.0 Probable septum site-determining protein MinC compare
PP_5706 -0.7 -1.6 Sec translocation complex - SecG subunit compare
PP_4136 -0.7 -1.4 Transcriptional regulator, LuxR family compare
PP_3392 -0.7 -1.4 conserved protein of unknown function compare
PP_4817 -0.7 -2.8 MaoC domain protein compare
PP_5569 -0.7 -1.7 protein of unknown function of phage origin compare
PP_4895 -0.7 -1.1 tRNA dimethylallyltransferase compare
PP_2475 -0.7 -2.7 Transcriptional regulator, TetR family compare
PP_0414 -0.7 -2.1 Polyamine ABC transporter, permease protein compare
PP_1764 -0.7 -2.1 Phosphoglycolate phosphatase 2 compare
PP_1390 -0.7 -2.8 conserved exported protein of unknown function compare
PP_4340 -0.7 -2.9 response regulator for chemotactic signal transduction compare
PP_4208 -0.7 -3.8 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1226 -0.7 -2.9 pre-queuosine 0 synthase compare
PP_1346 -0.7 -2.8 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_5229 -0.7 -2.0 conserved protein of unknown function compare
PP_1362 -0.7 -2.6 pyruvate kinase II compare
PP_0963 -0.7 -2.2 putative BolA family protein compare
PP_0001 -0.7 -0.8 probable chromosome-partitioning protein compare
PP_4130 -0.7 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4271 -0.7 -0.9 conserved protein of unknown function compare
PP_5331 -0.7 -1.7 Long-chain acyl-CoA thioester hydrolase compare
PP_0007 -0.7 -1.7 conserved hypothetical protein compare
PP_5580 -0.6 -1.9 protein of unknown function compare
PP_1217 -0.6 -2.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1878 -0.6 -4.2 conserved protein of unknown function compare
PP_1963 -0.6 -3.5 conserved protein of unknown function compare
PP_2253 -0.6 -1.7 Transcriptional regulator, GntR family compare
PP_1803 -0.6 -4.0 UDP-sugar epimerase compare
PP_5095 -0.6 -0.4 pyrroline-5-carboxylate reductase compare
PP_1788 -0.6 -1.9 conserved protein of unknown function compare
PP_5232 -0.6 -1.1 conserved protein of unknown function compare
PP_0434 -0.6 -2.6 Anhydro-N-acetylmuramic acid kinase compare
PP_0412 -0.6 -2.0 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_4875 -0.6 -2.6 conserved membrane protein of unknown function compare
PP_0002 -0.6 -3.7 probable chromosome partition protein compare
PP_0405 -0.6 -3.9 conserved protein of unknown function compare
PP_5230 -0.6 -1.8 Tyrosine recombinase XerC compare
PP_1310 -0.6 -2.1 conserved hypothetical protein compare
PP_0003 -0.6 -1.7 16S RNA methyltransferase compare
PP_4684 -0.6 -3.5 conserved protein of unknown function with kinase-like domain compare
PP_4532 -0.6 -1.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2136 -0.6 -2.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0345 -0.6 -2.6 putative Heptose kinase WapP compare
PP_5583 -0.6 -0.7 conserved protein of unknown function compare
PP_1562 -0.6 -1.8 putative Phage terminase, small subunit compare
PP_3649 -0.6 -2.2 Transcriptional regulator, GntR family compare
PP_1522 -0.6 -2.3 major cold shock protein compare
PP_0307 -0.6 -1.9 conserved exported protein of unknown function compare
PP_4879 -0.6 -2.2 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_5267 -0.6 -1.1 putative cytochrome c5 compare
PP_1269 -0.6 -1.0 Universal stress protein family compare
PP_2976 -0.6 -1.0 putative transposase compare
PP_4957 -0.6 -1.8 conserved protein of unknown function compare
PP_5482 -0.6 -3.1 protein of unknown function compare
PP_1322 -0.6 -1.4 putative Lipoprotein compare
PP_0512 -0.6 -2.1 hypothetical protein compare
PP_1109 -0.5 -4.4 Transcriptional regulator, GntR family compare
PP_1216 -0.5 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5047 -0.5 -3.0 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_3773 -0.5 -2.0 conserved protein of unknown function compare
PP_t29 -0.5 -1.2 tRNA-Ala compare


Specific Phenotypes

For 2 genes in this experiment