| | gene | name | fitness | t score | description | |
|---|
| b1361 | ydaW | +0.9 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b1279 | yciS | +0.9 | 1.2 | conserved inner membrane protein (NCBI) | compare |
| b1514 | lsrC | +0.8 | 1.9 | AI2 transporter (NCBI) | compare |
| b1362 | rzpR | +0.8 | 2.5 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b0564 | appY | +0.8 | 1.1 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b1150 | ymfR | +0.8 | 0.9 | e14 prophage; predicted protein (NCBI) | compare |
| b2096 | gatY | +0.8 | 3.3 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b1765 | ydjA | +0.7 | 0.7 | predicted oxidoreductase (NCBI) | compare |
| b0850 | ybjC | +0.7 | 2.1 | predicted inner membrane protein (NCBI) | compare |
| b1358 | ydaT | +0.7 | 1.1 | Rac prophage; predicted protein (NCBI) | compare |
| b2058 | wcaB | +0.7 | 1.0 | predicted acyl transferase (NCBI) | compare |
| b1607 | ydgC | +0.7 | 1.0 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b3863 | polA | +0.7 | 1.0 | DNA polymerase I (NCBI) | compare |
| b1307 | pspD | +0.7 | 1.4 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b1865 | nudB | +0.7 | 1.5 | dATP pyrophosphohydrolase (NCBI) | compare |
| b1792 | yeaO | +0.6 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b2236 | yfaE | +0.6 | 2.6 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b2939 | yqgB | +0.6 | 1.3 | predicted protein (RefSeq) | compare |
| b1992 | cobS | +0.6 | 1.9 | cobalamin synthase (NCBI) | compare |
| b1793 | yoaF | +0.6 | 1.4 | conserved outer membrane protein (NCBI) | compare |
| b0142 | folK | +0.6 | 0.5 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b4294 | insA-7 | +0.6 | 1.8 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b2005 | yeeV | +0.6 | 2.1 | CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b0249 | ykfF | +0.6 | 2.3 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b4598 | yncL | +0.6 | 1.5 | hypothetical protein (RefSeq) | compare |
| b1465 | narV | +0.6 | 1.3 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b3676 | yidH | +0.6 | 3.4 | conserved inner membrane protein (NCBI) | compare |
| b3107 | yhaL | +0.6 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2953 | yggU | +0.6 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2447 | yffP | +0.6 | 2.3 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b3027 | ygiZ | +0.6 | 0.3 | conserved inner membrane protein (NCBI) | compare |
| b2377 | yfdY | +0.6 | 1.5 | predicted inner membrane protein (NCBI) | compare |
| b1153 | ymfQ | +0.6 | 3.0 | e14 prophage; conserved protein (NCBI) | compare |
| b3512 | GadE | +0.6 | 2.4 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1261 | trpB | +0.6 | 1.9 | tryptophan synthase subunit beta (NCBI) | compare |
| b4546 | ypeB | +0.5 | 0.9 | hypothetical protein (NCBI) | compare |
| b3029 | ygiN | +0.5 | 2.0 | quinol monooxygenase (NCBI) | compare |
| b1479 | sfcA | +0.5 | 3.5 | NAD-linked malate dehydrogenase (malic enzyme) (VIMSS) | compare |
| b1685 | ydiH | +0.5 | 0.9 | predicted protein (RefSeq) | compare |
| b1038 | csgF | +0.5 | 1.6 | predicted transport protein (NCBI) | compare |
| b4515 | ybgT | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b1562 | hokD | +0.5 | 1.5 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b2726 | hypA | +0.5 | 2.5 | protein involved in nickel insertion into hydrogenases 3 (NCBI) | compare |
| b2446 | yffO | +0.5 | 1.5 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1390 | paaC | +0.5 | 2.8 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b1650 | nemA | +0.5 | 2.7 | N-ethylmaleimide reductase, FMN-linked (NCBI) | compare |
| b2209 | eco | +0.5 | 1.3 | ecotin precursor (NCBI) | compare |
| b2006 | yeeW | +0.5 | 2.4 | CP4-44 prophage; predicted protein (RefSeq) | compare |
| b0848 | ybjM | +0.5 | 3.2 | predicted inner membrane protein (NCBI) | compare |
| b0247 | ykfG | +0.5 | 0.9 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b1612 | fumA | +0.5 | 2.4 | fumarate hydratase (fumarase A), aerobic Class I (NCBI) | compare |
| b2390 | ypeC | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b1129 | phoQ | +0.5 | 1.3 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b2457 | cchA | +0.5 | 1.5 | detox protein (VIMSS) | compare |
| b1656 | sodB | +0.5 | 1.2 | superoxide dismutase, Fe (NCBI) | compare |
| b1567 | intK | +0.5 | 0.9 | Qin prophage; predicted protein (RefSeq) | compare |
| b1337 | abgB | +0.5 | 1.7 | predicted peptidase, aminobenzoyl-glutamate utilization protein (NCBI) | compare |
| b1755 | ynjC | +0.5 | 2.3 | fused transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b4582 | yoeA | +0.5 | 2.8 | no description | compare |
| b4369 | leuP | +0.5 | 1.4 | tRNA-Leu (NCBI) | compare |
| b3134 | agaW | +0.5 | 2.5 | N-acetylgalactosamine-specific enzyme IIC component of PTS, fragment (pseudogene) (RefSeq) | compare |
| b1838 | pphA | +0.5 | 2.1 | protein phosphatase 1 modulates phosphoproteins, signals protein misfolding (VIMSS) | compare |
| b3068 | ygjF | +0.5 | 1.8 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b1190 | dadX | +0.5 | 2.9 | alanine racemase (NCBI) | compare |
| b4592 | yccB | +0.5 | 1.0 | hypothetical protein (RefSeq) | compare |
| b0856 | potH | +0.5 | 1.7 | putrescine transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1317 | ycjU | +0.5 | 2.1 | predicted beta-phosphoglucomutase (NCBI) | compare |
| b0713 | ybgL | +0.5 | 2.4 | hypothetical protein (NCBI) | compare |
| b0219 | yafV | +0.5 | 1.7 | predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) | compare |
| b4041 | plsB | +0.5 | 1.0 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b1628 | rsxB | +0.5 | 1.2 | electron transport complex protein RnfB (NCBI) | compare |
| b2204 | napH | +0.5 | 2.5 | quinol dehydrogenase membrane component (NCBI) | compare |
| b4529 | ydbJ | +0.5 | 0.6 | hypothetical protein (NCBI) | compare |
| b1647 | ydhF | +0.4 | 1.4 | predicted oxidoreductase (NCBI) | compare |
| b1648 | b1648 | +0.4 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1890 | motA | +0.4 | 2.1 | flagellar motor protein MotA (NCBI) | compare |
| b1415 | aldA | +0.4 | 2.4 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b1132 | hflD | +0.4 | 2.8 | hypothetical protein (NCBI) | compare |
| b1572 | ydfB | +0.4 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1548 | nohA | +0.4 | 0.8 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b0248 | yafX | +0.4 | 2.9 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b2246 | b2246 | +0.4 | 2.5 | putative transport protein (VIMSS) | compare |
| b0352 | mhpE | +0.4 | 2.5 | 4-hydroxy-2-ketovalerate aldolase (NCBI) | compare |
| b1013 | ycdC | +0.4 | 1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0895 | dmsB | +0.4 | 2.4 | dimethyl sulfoxide reductase, anaerobic, subunit B (NCBI) | compare |
| b1989 | asnV | +0.4 | 1.2 | tRNA-Asn (NCBI) | compare |
| b4301 | sgcE | +0.4 | 2.8 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b4533 | ynfO | +0.4 | 1.2 | Qin prophage; predicted protein (NCBI) | compare |
| b2698 | recX | +0.4 | 1.6 | RecA regulator RecX (NCBI) | compare |
| b2093 | gatB | +0.4 | 1.5 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b2700 | ygaD | +0.4 | 1.9 | competence damage-inducible protein A (NCBI) | compare |
| b3710 | mdtL | +0.4 | 2.7 | multidrug efflux system protein (NCBI) | compare |
| b4577 | sgrS | +0.4 | 1.0 | small antisense RNA (NCBI) | compare |
| b4073 | nrfD | +0.4 | 3.0 | formate-dependent nitrite reductase, membrane subunit (NCBI) | compare |
| b1709 | btuD | +0.4 | 0.5 | vitamin B12-transporter ATPase (NCBI) | compare |
| b1583 | ynfB | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b2419 | yfeK | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b2012 | yeeD | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b2439 | eutL | +0.4 | 2.2 | predicted carboxysome structural protein with predicted role in ethanolamine utilization (NCBI) | compare |
| b4195 | ulaC | +0.4 | 1.7 | L-ascorbate-specific enzyme IIA component of PTS (NCBI) | compare |
| b2421 | cysM | +0.4 | 1.8 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b1671 | ydhX | +0.4 | 1.1 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b1768 | ydjB | +0.4 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b0782 | moaB | +0.4 | 0.8 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b2911 | ssrS | +0.4 | 0.8 | 6S regulatory RNA (NCBI) | compare |
| b4699 | fnrS | +0.4 | 0.4 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b2825 | ppdB | +0.4 | 2.5 | hypothetical protein (NCBI) | compare |
| b0864 | artP | +0.4 | 1.8 | arginine transporter subunit (NCBI) | compare |
| b2567 | rnc | +0.4 | 0.5 | ribonuclease III (NCBI) | compare |
| b1686 | ydiI | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b3672 | ivbL | +0.4 | 1.6 | ilvB operon leader peptide (NCBI) | compare |
| b2066 | udk | +0.4 | 2.7 | uridine/cytidine kinase (VIMSS) | compare |
| b0643 | ybeL | +0.4 | 2.9 | hypothetical protein (NCBI) | compare |
| b2381 | ypdB | +0.4 | 2.4 | predicted response regulator in two-component system withYpdA (NCBI) | compare |
| b1366 | ydaY | +0.4 | 1.9 | Rac prophage; predicted protein (RefSeq) | compare |
| b1868 | yecE | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b4050 | yjbO | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1848 | yebG | +0.4 | 0.7 | conserved protein regulated by LexA (NCBI) | compare |
| b0780 | ybhK | +0.4 | 1.6 | predicted transferase with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b1681 | sufD | +0.4 | 2.0 | component of SufBCD complex (NCBI) | compare |
| b4269 | yjgB | +0.4 | 2.5 | putative oxidoreductase (VIMSS) | compare |
| b1008 | ycdI | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b4064 | yjcD | +0.4 | 3.0 | predicted permease (NCBI) | compare |
| b0828 | iaaA | +0.4 | 1.3 | L-asparaginase (NCBI) | compare |
| b4567 | yjjZ | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b1384 | feaR | +0.4 | 2.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0766 | ybhA | +0.4 | 2.4 | predicted hydrolase (NCBI) | compare |
| b2080 | b2080 | +0.4 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1394 | paaG | +0.4 | 1.4 | enoyl-CoA hydratase (NCBI) | compare |
| b2438 | b2438 | +0.4 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2445 | yffN | +0.4 | 1.7 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1782 | mipA | +0.4 | 1.5 | scaffolding protein for murein synthesizing machinery (NCBI) | compare |
| b2309 | hisJ | +0.4 | 1.8 | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | compare |
| b0809 | glnQ | +0.4 | 2.3 | glutamine ABC transporter ATP-binding protein (NCBI) | compare |
| b3898 | frvX | +0.4 | 2.4 | predicted endo-1,4-beta-glucanase (NCBI) | compare |
| b1289 | ycjD | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b2444 | yffM | +0.4 | 1.0 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b2048 | cpsG | +0.4 | 2.4 | phosphomannomutase (NCBI) | compare |
| b0706 | ybfD | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b1387 | maoC | +0.4 | 1.7 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b1566 | flxA | +0.4 | 0.9 | Qin prophage; predicted protein (NCBI) | compare |
| b4095 | phnM | +0.4 | 2.6 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b1585 | ynfC | +0.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1749 | xthA | +0.4 | 1.5 | exonuclease III (NCBI) | compare |
| b0453 | ybaY | +0.4 | 2.6 | glycoprotein/polysaccharide metabolism (VIMSS) | compare |
| b0925 | ycbB | +0.4 | 2.3 | predicted carboxypeptidase (NCBI) | compare |
| b1110 | ycfJ | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b1609 | rstB | +0.4 | 1.7 | sensory histidine kinase in two-component regulatory system with RstA (NCBI) | compare |
| b0858 | ybjO | +0.4 | 1.0 | predicted inner membrane protein (NCBI) | compare |
| b2342 | yfcY | +0.4 | 2.2 | acetyl-CoA acetyltransferase (NCBI) | compare |
| b1853 | yebK | +0.4 | 1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0549 | ybcO | +0.4 | 1.2 | DLP12 prophage; predicted protein (NCBI) | compare |
| b3125 | garR | +0.4 | 2.5 | tartronate semialdehyde reductase (RefSeq) | compare |
| b1105 | ycfM | +0.4 | 1.0 | predicted outer membrane lipoprotein (NCBI) | compare |
| b3012 | yqhE | +0.4 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b1614 | ydgA | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b4406 | yaeP | +0.4 | 0.8 | hypothetical protein (NCBI) | compare |
| b3918 | cdh | +0.3 | 2.2 | CDP-diacylglycerol pyrophosphatase (NCBI) | compare |
| b3153 | yhbO | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1727 | yniC | +0.3 | 1.2 | predicted hydrolase (NCBI) | compare |
| b0686 | ybfF | +0.3 | 2.3 | hypothetical protein (NCBI) | compare |
| b1673 | ydhV | +0.3 | 1.8 | predicted oxidoreductase (NCBI) | compare |
| b1617 | uidA | +0.3 | 2.2 | beta-D-glucuronidase (NCBI) | compare |
| b0946 | ycbW | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1221 | narL | +0.3 | 1.3 | DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) (NCBI) | compare |
| b0225 | yafQ | +0.3 | 1.4 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b4093 | phnO | +0.3 | 1.4 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2443 | yffL | +0.3 | 1.6 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b4457 | csrC | +0.3 | 1.4 | regulatory RNA (NCBI) | compare |
| b1226 | narJ | +0.3 | 1.5 | molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1 (NCBI) | compare |
| b2829 | ptsP | +0.3 | 2.7 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2983 | yghQ | +0.3 | 2.3 | predicted inner membrane protein (NCBI) | compare |
| b1314 | b1314 | +0.3 | 1.8 | putative transient receptor potential locus (VIMSS) | compare |
| b4418 | sraB | +0.3 | 0.5 | unknown RNA (NCBI) | compare |
| b0539 | ybcC | +0.3 | 2.0 | DLP12 prophage; predicted exonuclease (RefSeq) | compare |
| b3504 | yhiS | +0.3 | 0.2 | hypothetical protein (RefSeq) | compare |
| b2015 | yeeY | +0.3 | 1.9 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b4505 | insX | +0.3 | 0.7 | predicted IS protein (RefSeq) | compare |
| b1513 | lsrA | +0.3 | 1.4 | fused AI2 transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b0804 | ybiX | +0.3 | 1.6 | putative enzyme (VIMSS) | compare |
| b1075 | flgD | +0.3 | 1.2 | flagellar basal body rod modification protein D (NCBI) | compare |
| b2258 | b2258 | +0.3 | 0.5 | putative transport/receptor protein (VIMSS) | compare |
| b1414 | ydcF | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b2959 | yggL | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4566 | yjhX | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b4413 | sokC | +0.3 | 0.6 | regulatory antisense RNA (NCBI) | compare |
| b4163 | glyV | +0.3 | 0.7 | tRNA-Gly (NCBI) | compare |
| b4493 | gapC | +0.3 | 1.2 | no description | compare |
| b1148 | ymfM | +0.3 | 1.3 | e14 prophage; predicted protein (NCBI) | compare |
| b1698 | ydiR | +0.3 | 1.6 | predicted electron transfer flavoprotein, FAD-binding (NCBI) | compare |
| b3135 | agaA | +0.3 | 1.7 | predicted truncated N-acetylgalactosamine-6-phosphate deacetylase (RefSeq) | compare |
| b1711 | btuC | +0.3 | 2.0 | vtamin B12-transporter permease (NCBI) | compare |
| b0916 | ycaQ | +0.3 | 2.3 | hypothetical protein (NCBI) | compare |
| b1315 | ycjS | +0.3 | 2.0 | predicted oxidoreductase, NADH-binding (NCBI) | compare |
| b1185 | dsbB | +0.3 | 1.1 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1253 | yciA | +0.3 | 0.9 | predicted hydrolase (NCBI) | compare |
| b0269 | yagF | +0.3 | 2.5 | CP4-6 prophage; predicted dehydratase (NCBI) | compare |
| b4618 | tisB | +0.3 | 1.5 | lexA-regulated toxic peptide (RefSeq) | compare |
| b1171 | b1171 | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2543 | yphA | +0.3 | 2.3 | predicted inner membrane protein (RefSeq) | compare |