| | gene | name | fitness | t score | description | |
|---|
| b3816 | corA | -5.8 | -15.0 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b0049 | apaH | -4.2 | -5.8 | diadenosinetetraphosphatase (NCBI) | compare |
| b3088 | alx | -3.8 | -11.3 | predicted inner membrane protein, part of terminus (NCBI) | compare |
| b0222 | lpcA | -3.6 | -5.6 | phosphoheptose isomerase (NCBI) | compare |
| b3619 | rfaD | -3.5 | -7.0 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b1493 | gadB | -3.3 | -1.5 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b0737 | tolQ | -3.1 | -5.1 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1860 | ruvB | -3.1 | -2.1 | Holliday junction DNA helicase B (NCBI) | compare |
| b3621 | rfaC | -3.0 | -10.7 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b0738 | tolR | -2.9 | -5.2 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b3052 | rfaE | -2.8 | -8.8 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3979 | thrT | -2.8 | -0.9 | tRNA-Thr (NCBI) | compare |
| b3613 | yibP | -2.7 | -7.1 | putative membrane protein (VIMSS) | compare |
| b0232 | yafN | -2.7 | -1.2 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b0739 | tolA | -2.6 | -6.1 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b1361 | ydaW | -2.5 | -0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1863 | ruvC | -2.4 | -3.6 | Holliday junction resolvase (NCBI) | compare |
| b1861 | ruvA | -2.3 | -3.0 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b3443 | yrhA | -2.3 | -2.9 | orf, hypothetical protein (VIMSS) | compare |
| b4146 | yjeK | -2.2 | -3.3 | predicted lysine aminomutase (NCBI) | compare |
| b3290 | trkA | -2.2 | -3.3 | potassium transporter peripheral membrane component (NCBI) | compare |
| b4042 | dgkA | -2.2 | -3.5 | diacylglycerol kinase (NCBI) | compare |
| b1882 | cheY | -2.2 | -0.9 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b3912 | cpxR | -2.1 | -9.5 | DNA-binding response regulator in two-component regulatory system with CpxA (NCBI) | compare |
| b0740 | tolB | -2.1 | -7.3 | translocation protein TolB precursor (NCBI) | compare |
| b2567 | rnc | -2.1 | -1.4 | ribonuclease III (NCBI) | compare |
| b1936 | intG | -2.1 | -1.7 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b0990 | cspG | -2.0 | -1.3 | DNA-binding transcriptional regulator (NCBI) | compare |
| b3620 | rfaF | -2.0 | -7.4 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b2894 | xerD | -1.9 | -1.3 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b4647 | mokA | -1.9 | -1.2 | no description | compare |
| b1192 | ldcA | -1.8 | -6.3 | L,D-carboxypeptidase A (NCBI) | compare |
| b1290 | sapF | -1.8 | -2.2 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b2620 | smpB | -1.8 | -1.8 | SsrA-binding protein (NCBI) | compare |
| b4701 | sokX | -1.8 | -1.5 | sok-related sRNA, function unknown (RefSeq) | compare |
| b1506 | yneL | -1.8 | -2.4 | predicted transcriptional regulator (NCBI) | compare |
| b1358 | ydaT | -1.7 | -2.0 | Rac prophage; predicted protein (NCBI) | compare |
| b1951 | rcsA | -1.7 | -1.6 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b3341 | rpsG | -1.7 | -1.5 | 30S ribosomal protein S7 (NCBI) | compare |
| b1292 | sapC | -1.7 | -3.2 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0114 | aceE | -1.7 | -1.9 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b4174 | hflK | -1.7 | -10.0 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b4175 | hflC | -1.7 | -9.2 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b1236 | galU | -1.6 | -6.1 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b1258 | yciF | -1.6 | -1.1 | hypothetical protein (NCBI) | compare |
| b3791 | rffA | -1.6 | -9.2 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b3792 | wzxE | -1.6 | -8.5 | O-antigen translocase (NCBI) | compare |
| b2820 | recB | -1.6 | -2.5 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b4481 | rffT | -1.6 | -9.3 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b3261 | fis | -1.6 | -3.0 | DNA-binding protein Fis (NCBI) | compare |
| b0200 | gmhB | -1.5 | -2.3 | hypothetical protein (NCBI) | compare |
| b3466 | yhhL | -1.5 | -5.6 | conserved inner membrane protein (NCBI) | compare |
| b3790 | rffC | -1.5 | -6.5 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b2935 | tktA | -1.4 | -2.9 | transketolase 1, thiamin-binding (NCBI) | compare |
| b4025 | pgi | -1.4 | -7.8 | glucose-6-phosphate isomerase (NCBI) | compare |
| b3863 | polA | -1.4 | -1.6 | DNA polymerase I (NCBI) | compare |
| b0688 | pgm | -1.4 | -4.8 | phosphoglucomutase (NCBI) | compare |
| b2189 | proL | -1.4 | -2.2 | tRNA-Pro (NCBI) | compare |
| b2501 | ppk | -1.4 | -8.8 | polyphosphate kinase (NCBI) | compare |
| b2808 | gcvA | -1.4 | -4.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1677 | lpp | -1.4 | -2.0 | murein lipoprotein (NCBI) | compare |
| b3741 | gidA | -1.4 | -6.0 | glucose-inhibited division protein A (NCBI) | compare |
| b1830 | prc | -1.4 | -5.3 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3794 | rffM | -1.3 | -7.0 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b2518 | ndk | -1.3 | -3.1 | nucleoside diphosphate kinase (NCBI) | compare |
| b3842 | rfaH | -1.3 | -6.4 | transcriptional activator RfaH (NCBI) | compare |
| b3630 | rfaP | -1.3 | -9.7 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1575 | dicB | -1.3 | -1.6 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b4416 | rybA | -1.3 | -1.8 | unknown RNA (NCBI) | compare |
| b0890 | ftsK | -1.3 | -5.4 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b1950 | fliR | -1.3 | -3.9 | flagellar biosynthesis protein R (NCBI) | compare |
| b2110 | yehC | -1.3 | -1.2 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b3387 | dam | -1.3 | -8.8 | DNA adenine methylase (NCBI) | compare |
| b1164 | ycgZ | -1.3 | -2.1 | hypothetical protein (NCBI) | compare |
| b1176 | minC | -1.2 | -3.9 | septum formation inhibitor (NCBI) | compare |
| b2318 | truA | -1.2 | -3.7 | tRNA pseudouridine synthase A (NCBI) | compare |
| b3787 | rffD | -1.2 | -8.0 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b4203 | rplI | -1.2 | -4.9 | 50S ribosomal protein L9 (NCBI) | compare |
| b1175 | minD | -1.2 | -4.3 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b0300 | ykgA | -1.2 | -4.2 | putative ARAC-type regulatory protein (VIMSS) | compare |
| b0730 | mngR | -1.2 | -1.8 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b1712 | ihfA | -1.2 | -2.3 | integration host factor subunit alpha (NCBI) | compare |
| b0437 | clpP | -1.2 | -6.0 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b3021 | ygiT | -1.2 | -2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3977 | tyrU | -1.1 | -1.0 | tRNA-Tyr (NCBI) | compare |
| b3786 | rffE | -1.1 | -8.5 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b3642 | pyrE | -1.1 | -4.4 | orotate phosphoribosyltransferase (NCBI) | compare |
| b0407 | yajC | -1.1 | -2.2 | preprotein translocase subunit YajC (NCBI) | compare |
| b0218 | yafU | -1.1 | -3.4 | predicted inner membrane protein (RefSeq) | compare |
| b1348 | lar | -1.1 | -2.9 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b1709 | btuD | -1.1 | -0.9 | vitamin B12-transporter ATPase (NCBI) | compare |
| b0051 | ksgA | -1.1 | -4.7 | dimethyladenosine transferase (NCBI) | compare |
| b3784 | rfe | -1.1 | -8.6 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b1334 | fnr | -1.1 | -2.2 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b4172 | hfq | -1.1 | -1.2 | RNA-binding protein Hfq (NCBI) | compare |
| b1025 | ycdT | -1.1 | -2.0 | predicted diguanylate cyclase (NCBI) | compare |
| b2830 | nudH | -1.1 | -1.0 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b1161 | ycgX | -1.1 | -1.1 | hypothetical protein (NCBI) | compare |
| b1523 | yneG | -1.1 | -2.0 | hypothetical protein (NCBI) | compare |
| b0303 | ykgI | -1.1 | -0.7 | orf, hypothetical protein (VIMSS) | compare |
| b4402 | yjjY | -1.1 | -1.3 | hypothetical protein (NCBI) | compare |
| b1291 | sapD | -1.1 | -2.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b2699 | recA | -1.1 | -1.7 | recombinase A (NCBI) | compare |
| b3811 | xerC | -1.1 | -2.4 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b4155 | yjeA | -1.0 | -0.7 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b2017 | yefM | -1.0 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b3631 | rfaG | -1.0 | -7.6 | glucosyltransferase I (NCBI) | compare |
| b3839 | tatC | -1.0 | -5.7 | TatABCE protein translocation system subunit (NCBI) | compare |
| b3389 | aroB | -1.0 | -6.9 | 3-dehydroquinate synthase (NCBI) | compare |
| b3390 | aroK | -1.0 | -2.4 | shikimate kinase I (NCBI) | compare |
| b1286 | rnb | -1.0 | -2.8 | exoribonuclease II (NCBI) | compare |
| b4685 | yrbN | -1.0 | -3.1 | expressed protein (RefSeq) | compare |
| b1693 | aroD | -1.0 | -6.2 | 3-dehydroquinate dehydratase (NCBI) | compare |
| b4375 | prfC | -1.0 | -4.5 | peptide chain release factor 3 (NCBI) | compare |
| b2363 | yfdT | -1.0 | -2.3 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b2168 | fruK | -1.0 | -1.4 | 1-phosphofructokinase (NCBI) | compare |
| b2330 | yfcB | -1.0 | -1.6 | putative adenine-specific methylase (VIMSS) | compare |
| b3706 | trmE | -1.0 | -4.4 | tRNA modification GTPase (NCBI) | compare |
| b3162 | deaD | -1.0 | -4.0 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b0912 | ihfB | -1.0 | -2.9 | integration host factor subunit beta (NCBI) | compare |
| b1108 | ycfP | -0.9 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4239 | treC | -0.9 | -1.8 | trehalose-6-P hydrolase (NCBI) | compare |
| b2528 | iscA | -0.9 | -1.9 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b3916 | pfkA | -0.9 | -3.0 | 6-phosphofructokinase (NCBI) | compare |
| b0406 | tgt | -0.9 | -3.7 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b1968 | yedV | -0.9 | -2.9 | predicted sensory kinase in two-component regulatory system with YedW (NCBI) | compare |
| b1480 | sra | -0.9 | -1.3 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b3629 | rfaS | -0.9 | -3.7 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1257 | yciE | -0.9 | -0.5 | hypothetical protein (NCBI) | compare |
| b2188 | yejM | -0.9 | -5.0 | predicted hydrolase, inner membrane (NCBI) | compare |
| b0889 | lrp | -0.9 | -2.9 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b4640 | yoeG | -0.9 | -2.9 | no description | compare |
| b0683 | fur | -0.9 | -1.3 | ferric uptake regulator (NCBI) | compare |
| b4655 | ythA | -0.9 | -1.6 | expressed protein (RefSeq) | compare |
| b1351 | racC | -0.9 | -0.6 | Rac prophage; predicted protein (NCBI) | compare |
| b0706 | ybfD | -0.9 | -2.0 | hypothetical protein (NCBI) | compare |
| b3933 | ftsN | -0.9 | -5.5 | essential cell division protein (NCBI) | compare |
| b1503 | ydeR | -0.9 | -3.1 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1346 | ydaQ | -0.9 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1850 | eda | -0.9 | -1.9 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b3465 | yhhF | -0.9 | -3.7 | predicted methyltransferase (NCBI) | compare |
| b3626 | rfaJ | -0.9 | -4.2 | UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) | compare |
| b3438 | gntR | -0.9 | -4.8 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3375 | yhfR | -0.8 | -5.5 | putative transcriptional regulator (VIMSS) | compare |
| b0015 | dnaJ | -0.8 | -5.0 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b0741 | pal | -0.8 | -3.0 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b3205 | yhbJ | -0.8 | -3.4 | hypothetical protein (NCBI) | compare |
| b2743 | pcm | -0.8 | -3.3 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b1217 | chaB | -0.8 | -1.5 | cation transport regulator (NCBI) | compare |
| b4245 | pyrB | -0.8 | -5.3 | aspartate carbamoyltransferase catalytic subunit (NCBI) | compare |
| b3281 | aroE | -0.8 | -6.5 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b1502 | ydeQ | -0.8 | -2.1 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b3405 | ompR | -0.8 | -3.9 | osmolarity response regulator (NCBI) | compare |
| b1382 | ynbE | -0.8 | -1.3 | predicted lipoprotein (NCBI) | compare |
| b1409 | ynbB | -0.8 | -0.7 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b3163 | nlpI | -0.8 | -2.9 | hypothetical protein (NCBI) | compare |
| b2614 | grpE | -0.8 | -1.8 | heat shock protein (NCBI) | compare |
| b0310 | ykgH | -0.8 | -1.2 | predicted inner membrane protein (NCBI) | compare |
| b1765 | ydjA | -0.8 | -0.6 | predicted oxidoreductase (NCBI) | compare |
| b4497 | yeeL | -0.8 | -0.9 | no description | compare |
| b1168 | b1168 | -0.8 | -3.3 | putative proteases (VIMSS) | compare |
| b0998 | torD | -0.8 | -1.0 | chaperone protein TorD (NCBI) | compare |
| b1074 | flgC | -0.8 | -1.8 | flagellar basal-body rod protein C (NCBI) | compare |
| b1293 | sapB | -0.8 | -1.4 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1429 | tehA | -0.8 | -1.2 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b1579 | intQ | -0.8 | -2.8 | Qin prophage; predicted defective integrase (RefSeq) | compare |
| b0014 | dnaK | -0.8 | -1.6 | molecular chaperone DnaK (NCBI) | compare |
| b2569 | lepA | -0.8 | -3.0 | GTP-binding protein LepA (NCBI) | compare |
| b1696 | ydiP | -0.8 | -2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3623 | rfaK | -0.8 | -1.8 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b1368 | ynaA | -0.8 | -2.6 | Rac prophage; predicted tail protein (RefSeq) | compare |
| b0053 | surA | -0.8 | -4.1 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b4414 | tff | -0.8 | -2.1 | unknown RNA (NCBI) | compare |
| b2165 | yeiN | -0.7 | -4.0 | hypothetical protein (NCBI) | compare |
| b1160 | elbA | -0.7 | -1.1 | hypothetical protein (NCBI) | compare |
| b0888 | trxB | -0.7 | -2.7 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b3870 | glnA | -0.7 | -2.6 | glutamine synthetase (NCBI) | compare |
| b1877 | yecT | -0.7 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2642 | yfjW | -0.7 | -0.7 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b2024 | hisA | -0.7 | -1.2 | N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase (VIMSS) | compare |
| b1205 | ychH | -0.7 | -1.3 | predicted inner membrane protein (NCBI) | compare |
| b1727 | yniC | -0.7 | -1.7 | predicted hydrolase (NCBI) | compare |
| b2111 | yehD | -0.7 | -2.1 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b3199 | yrbK | -0.7 | -1.5 | hypothetical protein (NCBI) | compare |
| b0705 | ybfL | -0.7 | -0.5 | putative receptor protein (VIMSS) | compare |
| b4171 | miaA | -0.7 | -2.4 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b0004 | thrC | -0.7 | -5.2 | threonine synthase (NCBI) | compare |
| b0499 | ylbH | -0.7 | -3.5 | conserved protein, rhs-like (RefSeq) | compare |
| b1730 | ydjO | -0.7 | -1.2 | predicted protein (RefSeq) | compare |
| b3210 | arcB | -0.7 | -3.6 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b4312 | fimB | -0.7 | -5.5 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b1399 | paaX | -0.7 | -2.8 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b3625 | rfaY | -0.7 | -3.6 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2586 | yfiM | -0.7 | -2.8 | predicted protein (RefSeq) | compare |
| b3935 | priA | -0.7 | -1.3 | primosome assembly protein PriA (NCBI) | compare |
| b1139 | lit | -0.7 | -3.5 | e14 prophage; cell death peptidase, inhibitor of T4 late gene expression (NCBI) | compare |
| b0508 | hyi | -0.7 | -2.5 | hydroxypyruvate isomerase (NCBI) | compare |
| b1691 | ydiN | -0.7 | -2.7 | predicted transporter (RefSeq) | compare |
| b2272 | yfbM | -0.7 | -2.6 | hypothetical protein (NCBI) | compare |
| b4699 | fnrS | -0.7 | -0.6 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |