| | gene | name | fitness | t score | description | |
|---|
| b4313 | fimE | +4.2 | 24.8 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b2289 | lrhA | +1.5 | 8.2 | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | compare |
| b2531 | iscR | +1.4 | 2.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0564 | appY | +1.1 | 1.6 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b4406 | yaeP | +0.9 | 2.9 | hypothetical protein (NCBI) | compare |
| b4480 | hdfR | +0.9 | 4.5 | transcriptional regulator HdfR (NCBI) | compare |
| b1361 | ydaW | +0.9 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b1183 | umuD | +0.8 | 2.2 | DNA polymerase V, subunit D (NCBI) | compare |
| b1514 | lsrC | +0.8 | 1.4 | AI2 transporter (NCBI) | compare |
| b1144 | ymfJ | +0.8 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1266 | yciV | +0.7 | 2.2 | hypothetical protein (NCBI) | compare |
| b2937 | speB | +0.7 | 3.3 | agmatinase (NCBI) | compare |
| b1837 | yebW | +0.7 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b3781 | trxA | +0.7 | 2.3 | thioredoxin 1 (VIMSS) | compare |
| b0850 | ybjC | +0.7 | 2.6 | predicted inner membrane protein (NCBI) | compare |
| b1684 | sufA | +0.7 | 3.0 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b0082 | mraW | +0.6 | 2.5 | S-adenosyl-methyltransferase (NCBI) | compare |
| b4596 | yciZ | +0.6 | 1.0 | hypothetical protein (RefSeq) | compare |
| b1390 | paaC | +0.6 | 3.1 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b1727 | yniC | +0.6 | 1.9 | predicted hydrolase (NCBI) | compare |
| b1984 | asnW | +0.6 | 1.1 | tRNA-Asn (NCBI) | compare |
| b1644 | b1644 | +0.6 | 2.0 | putative membrane protein (VIMSS) | compare |
| b2236 | yfaE | +0.6 | 2.3 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b4568 | ytjA | +0.6 | 1.6 | predicted protein (RefSeq) | compare |
| b0145 | dksA | +0.6 | 1.9 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b1248 | b1248 | +0.6 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b3493 | pitA | +0.6 | 3.3 | phosphate transporter, low-affinity (NCBI) | compare |
| b2939 | yqgB | +0.6 | 1.1 | predicted protein (RefSeq) | compare |
| b0101 | yacG | +0.6 | 3.1 | zinc-binding protein (NCBI) | compare |
| b4454 | rdlD | +0.6 | 2.6 | sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR-D repeat, with toxic peptide LdrD (RefSeq) | compare |
| b4066 | yjcF | +0.6 | 0.5 | hypothetical protein (NCBI) | compare |
| b2262 | menB | +0.6 | 1.9 | naphthoate synthase (NCBI) | compare |
| b3764 | yifE | +0.5 | 2.6 | hypothetical protein (NCBI) | compare |
| b1643 | ydhI | +0.5 | 1.6 | predicted inner membrane protein (NCBI) | compare |
| b4592 | yccB | +0.5 | 1.1 | hypothetical protein (RefSeq) | compare |
| b1559 | b1559 | +0.5 | 3.3 | orf, hypothetical protein (VIMSS) | compare |
| b4513 | kdpF | +0.5 | 0.8 | potassium ion accessory transporter subunit (NCBI) | compare |
| b3863 | polA | +0.5 | 1.0 | DNA polymerase I (NCBI) | compare |
| b3761 | trpT | +0.5 | 1.2 | tRNA-Trp (NCBI) | compare |
| b1370 | insH-5 | +0.5 | 1.2 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b4397 | creA | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b2684 | mprA | +0.5 | 1.5 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b4506 | ykgO | +0.5 | 2.0 | rpmJ (L36) paralog (NCBI) | compare |
| b0821 | ybiU | +0.5 | 2.3 | hypothetical protein (NCBI) | compare |
| b2510 | b2510 | +0.5 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1782 | mipA | +0.5 | 2.8 | scaffolding protein for murein synthesizing machinery (NCBI) | compare |
| b2105 | yohL | +0.5 | 1.4 | hypothetical protein (NCBI) | compare |
| b1548 | nohA | +0.5 | 1.0 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b4224 | chpS | +0.5 | 2.1 | suppressor of inhibitory function of ChpB, PemI-like, autoregulated (VIMSS) | compare |
| b3238 | yhcN | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b4561 | insM | +0.5 | 2.5 | transposase (RefSeq) | compare |
| b1478 | adhP | +0.5 | 2.4 | alcohol dehydrogenase (VIMSS) | compare |
| b0492 | ybbN | +0.5 | 1.6 | putative thioredoxin-like protein (VIMSS) | compare |
| b0502 | ylbG | +0.5 | 1.7 | no description | compare |
| b1890 | motA | +0.5 | 0.9 | flagellar motor protein MotA (NCBI) | compare |
| b0503 | ybbB | +0.5 | 2.1 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b0550 | rusA | +0.5 | 1.1 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b4630 | ykgP | +0.5 | 1.5 | no description | compare |
| b1337 | abgB | +0.5 | 1.7 | predicted peptidase, aminobenzoyl-glutamate utilization protein (NCBI) | compare |
| b0829 | gsiA | +0.5 | 2.8 | fused predicted peptide transport subunits of ABC superfamily: ATP-binding components (RefSeq) | compare |
| b1733 | chbG | +0.5 | 1.4 | hypothetical protein (NCBI) | compare |
| b0439 | lon | +0.5 | 2.4 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b2704 | srlB | +0.5 | 1.3 | glucitol/sorbitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b2205 | napG | +0.5 | 2.0 | quinol dehydrogenase periplasmic component (NCBI) | compare |
| b2490 | b2490 | +0.4 | 1.3 | putative protein processing element (VIMSS) | compare |
| b4403 | yjtD | +0.4 | 2.1 | predicted rRNA methyltransferase (NCBI) | compare |
| b0652 | gltL | +0.4 | 2.2 | glutamate and aspartate transporter subunit (NCBI) | compare |
| b3268 | yhdW | +0.4 | 2.6 | predicted amino-acid transporter subunit (NCBI) | compare |
| b1307 | pspD | +0.4 | 0.9 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b1287 | yciW | +0.4 | 0.9 | putative oxidoreductase (VIMSS) | compare |
| b1387 | maoC | +0.4 | 2.2 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b1678 | ynhG | +0.4 | 2.7 | hypothetical protein (NCBI) | compare |
| b1148 | ymfM | +0.4 | 1.0 | e14 prophage; predicted protein (NCBI) | compare |
| b1306 | pspC | +0.4 | 1.6 | DNA-binding transcriptional activator (NCBI) | compare |
| b1661 | cfa | +0.4 | 1.9 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b0780 | ybhK | +0.4 | 2.4 | predicted transferase with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b3643 | rph | +0.4 | 2.4 | ribonuclease PH (NCBI) | compare |
| b0966 | hspQ | +0.4 | 1.8 | DNA-binding protein, hemimethylated (RefSeq) | compare |
| b0995 | torR | +0.4 | 2.1 | DNA-binding response regulator in two-component regulatory system with TorS (NCBI) | compare |
| b4409 | blr | +0.4 | 2.2 | beta-lactam resistance membrane protein (NCBI) | compare |
| b1803 | yeaX | +0.4 | 1.6 | predicted oxidoreductase (NCBI) | compare |
| b1855 | lpxM | +0.4 | 1.9 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b1007 | b1007 | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b3666 | uhpT | +0.4 | 2.6 | sugar phosphate antiporter (NCBI) | compare |
| b2424 | cysU | +0.4 | 1.5 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b1868 | yecE | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1262 | trpC | +0.4 | 1.8 | N-(5-phosphoribosyl)anthranilate isomerase and indole-3-glycerolphosphate synthetase (VIMSS) | compare |
| b0190 | yaeQ | +0.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b3150 | yraP | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b1289 | ycjD | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b1282 | yciH | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1761 | gdhA | +0.4 | 2.0 | glutamate dehydrogenase (NCBI) | compare |
| b2642 | yfjW | +0.4 | 0.6 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b1233 | ychJ | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b2673 | nrdH | +0.4 | 1.8 | glutaredoxin-like protein (NCBI) | compare |
| b0976 | hyaE | +0.4 | 1.9 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |
| b2150 | mglB | +0.4 | 1.4 | methyl-galactoside transporter subunit (NCBI) | compare |
| b2489 | hyfI | +0.4 | 1.9 | hydrogenase 4, Fe-S subunit (NCBI) | compare |
| b0583 | entD | +0.4 | 1.7 | phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex (NCBI) | compare |
| b2600 | tyrA | +0.4 | 2.8 | fused chorismate mutase T/prephenate dehydrogenase (NCBI) | compare |
| b0323 | yahI | +0.4 | 1.8 | predicted carbamate kinase-like protein (NCBI) | compare |
| b1325 | ycjG | +0.4 | 1.8 | putative muconate cycloisomerase I (EC 5.5.-.-) (VIMSS) | compare |
| b0486 | ybaT | +0.4 | 2.2 | predicted transporter (NCBI) | compare |
| b0831 | yliC | +0.4 | 1.9 | predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1412 | azoR | +0.4 | 1.6 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b2911 | ssrS | +0.4 | 0.8 | 6S regulatory RNA (NCBI) | compare |
| b2136 | yohD | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4418 | sraB | +0.4 | 0.9 | unknown RNA (NCBI) | compare |
| b2171 | yeiP | +0.4 | 2.3 | putative elongation factor (VIMSS) | compare |
| b1507 | hipA | +0.4 | 2.2 | regulator with hipB (NCBI) | compare |
| b2927 | epd | +0.4 | 1.7 | D-erythrose 4-phosphate dehydrogenase (NCBI) | compare |
| b1567 | intK | +0.4 | 0.9 | Qin prophage; predicted protein (RefSeq) | compare |
| b1151 | ymfO | +0.4 | 1.2 | e14 prophage; conserved protein (RefSeq) | compare |
| b1461 | ydcE | +0.4 | 1.1 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b1465 | narV | +0.4 | 1.0 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b3993 | thiE | +0.4 | 2.1 | thiamine-phosphate pyrophosphorylase (NCBI) | compare |
| b2005 | yeeV | +0.4 | 1.8 | CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b4378 | yjjV | +0.4 | 2.5 | predicted DNase (NCBI) | compare |
| b3129 | sohA | +0.4 | 1.3 | predicted regulator (NCBI) | compare |
| b3451 | ugpE | +0.4 | 2.2 | glycerol-3-phosphate transporter subunit (NCBI) | compare |
| b1594 | dgsA | +0.4 | 1.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4697 | yrdF | +0.4 | 1.6 | no description | compare |
| b4012 | yjaB | +0.4 | 1.4 | predicted acetyltransferase (NCBI) | compare |
| b3098 | yqjD | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b2222 | atoA | +0.4 | 2.4 | acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (NCBI) | compare |
| b0643 | ybeL | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1833 | yebS | +0.4 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b1622 | malY | +0.4 | 1.7 | bifunctional beta-cystathionase, PLP-dependent/ regulator of maltose regulon (NCBI) | compare |
| b1231 | tyrT | +0.4 | 0.5 | tRNA-Tyr (NCBI) | compare |
| b1804 | rnd | +0.4 | 1.6 | ribonuclease D (NCBI) | compare |
| b1085 | b1085 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2736 | ygbJ | +0.4 | 1.8 | predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b0936 | ycbO | +0.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2229 | b2229 | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2327 | yfcA | +0.4 | 2.0 | conserved inner membrane protein (NCBI) | compare |
| b0661 | miaB | +0.4 | 2.7 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b3134 | agaW | +0.4 | 1.7 | N-acetylgalactosamine-specific enzyme IIC component of PTS, fragment (pseudogene) (RefSeq) | compare |
| b2452 | eutH | +0.4 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b1832 | yebR | +0.4 | 2.0 | free methionine-(R)-sulfoxide reductase (RefSeq) | compare |
| b1066 | rimJ | +0.4 | 2.1 | ribosomal-protein-S5-alanine N-acetyltransferase (NCBI) | compare |
| b1154 | ycfK | +0.4 | 2.3 | e14 prophage; predicted protein (NCBI) | compare |
| b0099 | mutT | +0.4 | 1.6 | nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP (NCBI) | compare |
| b3207 | yrbL | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b1301 | puuB | +0.4 | 2.0 | gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) | compare |
| b4522 | yciX_1 | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b0838 | yliJ | +0.3 | 2.3 | putative transferase (VIMSS) | compare |
| b4001 | yjaH | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b0837 | yliI | +0.3 | 1.5 | predicted dehydrogenase (NCBI) | compare |
| b1224 | narG | +0.3 | 2.4 | nitrate reductase 1, alpha subunit (NCBI) | compare |
| b0454 | ybaZ | +0.3 | 1.1 | predicted methyltransferase (NCBI) | compare |
| b2700 | ygaD | +0.3 | 1.7 | competence damage-inducible protein A (NCBI) | compare |
| b2202 | napC | +0.3 | 1.8 | nitrate reductase, cytochrome c-type, periplasmic (NCBI) | compare |
| b2006 | yeeW | +0.3 | 1.1 | CP4-44 prophage; predicted protein (RefSeq) | compare |
| b0610 | rnk | +0.3 | 1.0 | nucleoside diphosphate kinase regulator (NCBI) | compare |
| b3487 | yhiI | +0.3 | 2.3 | predicted HlyD family secretion protein (NCBI) | compare |
| b0435 | bolA | +0.3 | 1.5 | possible regulator of murein genes (VIMSS) | compare |
| b1218 | chaC | +0.3 | 1.1 | regulatory protein for cation transport (RefSeq) | compare |
| b3582 | sgbU | +0.3 | 1.5 | probable 3-hexulose-6-phosphate isomerase (VIMSS) | compare |
| b4098 | phnJ | +0.3 | 2.2 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b1225 | narH | +0.3 | 1.5 | nitrate reductase 1, beta (Fe-S) subunit (NCBI) | compare |
| b3780 | rhlB | +0.3 | 2.3 | ATP-dependent RNA helicase (NCBI) | compare |
| b1177 | ycgJ | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b3958 | argC | +0.3 | 2.6 | N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) | compare |
| b2667 | ygaV | +0.3 | 2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4538 | yoeF | +0.3 | 0.8 | hypothetical protein (RefSeq) | compare |
| b4527 | b1354 | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0876 | ybjD | +0.3 | 1.8 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | compare |
| b2481 | hyfA | +0.3 | 1.6 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |
| b0856 | potH | +0.3 | 1.0 | putrescine transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2829 | ptsP | +0.3 | 2.7 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b3953 | frwD | +0.3 | 1.8 | predicted enzyme IIB component of PTS (NCBI) | compare |
| b4567 | yjjZ | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1602 | pntB | +0.3 | 1.6 | pyridine nucleotide transhydrogenase (NCBI) | compare |
| b2812 | ygdL | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b1806 | yeaY | +0.3 | 1.4 | predicted lipoprotein (NCBI) | compare |
| b1433 | b1433 | +0.3 | 1.4 | putative membrane transport protein (VIMSS) | compare |
| b2301 | yfcF | +0.3 | 1.2 | predicted enzyme (NCBI) | compare |
| b2557 | purL | +0.3 | 2.3 | phosphoribosylformylglycinamidine synthase (NCBI) | compare |
| b0692 | potE | +0.3 | 2.0 | putrescine/proton symporter: putrescine/ornithine antiporter (NCBI) | compare |
| b0312 | betB | +0.3 | 2.0 | betaine aldehyde dehydrogenase, NAD-dependent (NCBI) | compare |
| b0131 | panD | +0.3 | 1.4 | aspartate 1-decarboxylase precursor (NCBI) | compare |
| b3119 | tdcR | +0.3 | 0.7 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b0806 | ybiM | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b4648 | ysaC | +0.3 | 1.5 | no description | compare |
| b1685 | ydiH | +0.3 | 0.5 | predicted protein (RefSeq) | compare |
| b1626 | b1626 | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2488 | hyfH | +0.3 | 1.4 | hydrogenase 4, Fe-S subunit (NCBI) | compare |
| b1774 | ydjJ | +0.3 | 2.0 | predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI) | compare |
| b0713 | ybgL | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b0391 | yaiE | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b3024 | ygiW | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b1977 | asnT | +0.3 | 1.2 | tRNA-Asn (NCBI) | compare |
| b0571 | cusR | +0.3 | 2.1 | DNA-binding response regulator in two-component regulatory system with CusS (NCBI) | compare |
| b2432 | yfeY | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b3467 | yhhM | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b2953 | yggU | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b0994 | torT | +0.3 | 1.5 | periplasmic sensory protein associated with the TorRS two-component regulatory system (NCBI) | compare |
| b4371 | rsmC | +0.3 | 2.1 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | compare |
| b2916 | argP | +0.3 | 1.8 | chromosome replication initiation inhibitor protein (NCBI) | compare |
| b1442 | ydcU | +0.3 | 1.4 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |