Experiment set45IT009 for Escherichia coli BW25113
48 hr rep2_HD100_no_dilution
Group: predationMedia: HEPES_buffer_3mMCaCl2_2mMMgSo4 + HD100_bdellovibrio (1 x lysate)
Culturing: Keio_ML9a, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
Growth: about 0.0 generations
By: Alejandro on 8-Nov-20
Specific Phenotypes
For 4 genes in this experiment
For predation HD100_bdellovibrio in Escherichia coli BW25113
For predation HD100_bdellovibrio across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Biogenesis of cytochrome c oxidases | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| photosynthesis light reactions | 4 | 1 | 1 |
| NADPH to cytochrome c oxidase via plastocyanin (thylakoid membrane) | 4 | 1 | 1 |
| superpathway of photosynthetic hydrogen production | 6 | 3 | 1 |
| oxygenic photosynthesis | 17 | 11 | 1 |
| ethene biosynthesis V (engineered) | 25 | 18 | 1 |
| photosynthetic 3-hydroxybutanoate biosynthesis (engineered) | 26 | 19 | 1 |
| 1-butanol autotrophic biosynthesis (engineered) | 27 | 19 | 1 |