Experiment set44S665 for Pseudomonas putida KT2440

Compare to:

Putida_ML5X alone

200 most important genes:

  gene name fitness t score description  
PP_3105 -4.9 -3.1 conserved membrane protein of unknown function compare
PP_0753 -4.5 -9.2 putative Lipoprotein compare
PP_1224 -3.9 -7.9 periplasmic subunit of the TolQRA transport system compare
PP_4874 -3.1 -3.0 50S ribosomal protein L9 compare
PP_5309 -3.0 -10.1 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0435 -2.8 -3.3 Peptidase, M23/M37 family compare
PP_4902 -2.4 -2.8 Oligoribonuclease compare
PP_0856 -2.2 -1.5 conserved lipoprotein of unknown function compare
PP_5338 -2.1 -5.2 aspartate ammonia-lyase compare
PP_0393 -2.1 -3.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4895 -2.1 -3.4 tRNA dimethylallyltransferase compare
PP_4213 -1.9 -3.7 putative dipeptidase compare
PP_4700 -1.9 -1.3 pantothenate synthetase compare
PP_1783 -1.9 -3.3 dTDP-glucose pyrophosphorylase compare
PP_5328 -1.8 -1.8 putative phosphate transport system permease protein compare
PP_0833 -1.8 -1.2 queuine tRNA-ribosyltransferase compare
PP_4620 -1.8 -8.3 Fumarylacetoacetase compare
PP_4994 -1.8 -3.3 conserved protein of unknown function compare
PP_1898 -1.7 -2.3 MotA/TolQ/ExbB proton channel family protein compare
PP_4561 -1.7 -1.5 stress response protein compare
PP_1994 -1.6 -3.5 tRNA pseudouridine (38-40)synthase compare
PP_2336 -1.6 -4.7 aconitate hydratase 1 compare
PP_4379 -1.6 -5.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4785 -1.6 -5.1 conserved exported protein of unknown function compare
PP_4008 -1.5 -3.8 ATP-dependent serine protease compare
PP_4699 -1.5 -4.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0339 -1.5 -3.0 Pyruvate dehydrogenase E1 component compare
PP_5185 -1.5 -6.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5289 -1.5 -4.2 Acetylglutamate kinase compare
PP_5337 -1.5 -4.8 LysR family transcriptional regulator compare
PP_4941 -1.4 -4.7 conserved exported protein of unknown function compare
PP_1733 -1.4 -2.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_0566 -1.4 -1.5 translation-related factor compare
PP_4482 -1.4 -4.3 Transcriptional regulator, AraC family compare
PP_2378 -1.3 -3.0 Fe/S biogenesis protein NfuA compare
PP_4004 -1.3 -3.7 DNA translocase FtsK compare
PP_1734 -1.3 -3.2 Probable septum site-determining protein MinC compare
PP_4723 -1.3 -1.7 Carbamoyl-phosphate synthase large chain compare
PP_5109 -1.2 -4.9 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_3312 -1.2 -2.0 putative Heat shock protein compare
PP_4724 -1.2 -1.2 Carbamoyl-phosphate synthase small chain compare
PP_4546 -1.2 -4.2 ATP-dependent helicase HrpA compare
PP_1664 -1.2 -3.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_0888 -1.2 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_3902 -1.2 -3.1 conserved protein of unknown function compare
PP_4804 -1.2 -1.4 RlpA-like lipoprotein compare
PP_4910 -1.2 -3.2 conserved protein of unknown function compare
PP_1232 -1.1 -3.6 conserved exported protein of unknown function compare
PP_2088 -1.1 -1.9 RNA polymerase sigma factor SigX compare
PP_5508 -1.1 -1.4 conserved protein of unknown function compare
PP_1629 -1.1 -5.3 Protein RecA compare
PP_1088 -1.1 -7.2 Argininosuccinate synthase compare
PP_t12 -1.1 -1.2 tRNA-Thr compare
PP_4988 -1.1 -4.3 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0846 -1.1 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_0547 -1.1 -3.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1217 -1.1 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3649 -1.1 -3.3 Transcriptional regulator, GntR family compare
PP_4208 -1.1 -4.5 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4937 -1.1 -3.4 toluene tolerance protein compare
PP_4805 -1.0 -3.8 membrane-bound lytic murein transglycosylase B compare
PP_0809 -1.0 -4.9 disulfide bond formation protein B compare
PP_0293 -1.0 -1.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5110 -1.0 -1.5 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4989 -1.0 -2.2 Protein PilJ compare
PP_1439 -1.0 -1.8 conserved exported protein of unknown function compare
PP_2402 -1.0 -2.0 putative Sensor histidine kinase compare
PP_0184 -1.0 -5.4 Argininosuccinate lyase compare
PP_5057 -1.0 -4.3 Peptidase, M23/M37 family compare
PP_4860 -1.0 -6.7 putative Mannose-6-phosphate isomerase compare
PP_4993 -1.0 -2.4 Glutathione synthetase compare
PP_1322 -0.9 -1.6 putative Lipoprotein compare
PP_3539 -0.9 -2.9 putative Transcriptional regulator compare
PP_0290 -0.9 -3.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1096 -0.9 -1.5 putative electron transport complex protein compare
PP_0852 -0.9 -4.0 Transcriptional regulator, Cro/CI family compare
PP_4836 -0.9 -2.3 conserved exported protein of unknown function compare
PP_2302 -0.9 -3.5 DNA-binding, ATP-dependent protease compare
PP_3924 -0.8 -2.1 conserved protein of unknown function compare
PP_1293 -0.8 -1.5 molybdopterin synthase small subunit compare
PP_0832 -0.8 -2.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_3926 -0.8 -1.0 short-chain dehydrogenase compare
PP_1468 -0.8 -1.5 Tyrosine recombinase XerD compare
PP_5310 -0.8 -3.7 junction-specific ATP-dependent DNA helicase compare
PP_2747 -0.8 -1.6 conserved protein of unknown function compare
PP_2379 -0.8 -3.0 putative cytochrome oxidase biogenesis protein compare
PP_4215 -0.8 -2.2 pyoverdine biosynthesis related protein compare
PP_4964 -0.8 -1.8 D-erythrose 4-phosphate dehydrogenase compare
PP_0484 -0.7 -3.6 transporter of an unknown substrate compare
PP_5SB -0.7 -1.2 5S ribosomal RNA compare
PP_4214 -0.7 -2.4 pyoverdine biosynthesis related protein compare
PP_5600 -0.7 -1.8 conserved protein of unknown function compare
PP_0214 -0.7 -4.0 4-aminobutyrate aminotransferase compare
PP_0127 -0.7 -1.9 Thiol:disulfide interchange protein compare
PP_0001 -0.7 -1.3 probable chromosome-partitioning protein compare
PP_1716 -0.7 -1.2 Transcriptional regulator, Cro/CI family compare
PP_2144 -0.7 -2.3 Transcriptional regulator, TetR family compare
PP_0789 -0.7 -2.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0241 -0.7 -2.6 Transporter compare
PP_4814 -0.7 -1.8 ATP-dependent protease La domain protein compare
PP_5569 -0.7 -2.7 protein of unknown function of phage origin compare
PP_5621 -0.7 -1.9 protein of unknown function compare
PP_4268 -0.7 -1.0 nucleoid-associated broad specificity regulator compare
PP_3198 -0.7 -1.4 Ferredoxin, 2Fe-2S compare
PP_2581 -0.7 -1.3 conserved protein of unknown function compare
PP_0959 -0.7 -1.8 phospholipid ABC transporter compare
PP_1384 -0.7 -4.7 Probable efflux pump outer membrane protein TtgC compare
PP_4824 -0.7 -3.4 Sensor histidine kinase/response regulator compare
PP_4184 -0.7 -4.9 branched chain amino acid transporter compare
PP_2186 -0.7 -2.0 putative Formate dehydrogenase, delta subunit compare
PP_5139 -0.6 -2.6 cadmium translocating P-type ATPase compare
PP_5236 -0.6 -3.9 conserved protein of unknown function compare
PP_3765 -0.6 -2.7 H-NS family protein MvaT compare
PP_0630 -0.6 -0.8 DNA gyrase inhibitor YacG compare
PP_2077 -0.6 -2.4 diaminopimelate decarboxylase compare
PP_1826 -0.6 -2.2 Hydrolase, isochorismatase family compare
PP_4286 -0.6 -3.2 allantoinase compare
PP_5329 -0.6 -0.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4260 -0.6 -2.7 conserved protein of unknown function compare
PP_3333 -0.6 -2.3 conserved protein of unknown function compare
PP_2499 -0.6 -0.9 conserved protein of unknown function compare
PP_1679 -0.6 -1.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2334 -0.6 -2.7 2-methylisocitrate lyase compare
PP_0292 -0.6 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0429 -0.6 -3.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4217 -0.6 -5.1 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4722 -0.6 -2.5 Transcription elongation factor GreA compare
PP_2005 -0.6 -3.0 conserved exported protein of unknown function compare
PP_2203 -0.6 -0.9 conserved protein of unknown function compare
PP_1872 -0.6 -3.7 glutamate-pyruvate aminotransferase compare
PP_1045 -0.6 -1.1 Type II secretion pathway protein XcpP compare
PP_0119 -0.6 -2.3 putative zinc uptake regulation protein ZUR compare
PP_0850 -0.6 -3.0 Dual-specificity RNA methyltransferase RlmN compare
PP_0516 -0.6 -1.7 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_5346 -0.6 -3.6 pyruvate carboxylase subunit B compare
PP_5027 -0.6 -1.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0345 -0.6 -2.5 putative Heptose kinase WapP compare
PP_0035 -0.6 -0.9 putative bactoprenol-linked glycose transferase compare
PP_1670 -0.6 -4.4 putative Lipoprotein compare
PP_3511 -0.6 -3.4 Branched-chain-amino-acid aminotransferase compare
PP_2357 -0.6 -2.1 putative Type 1 pili protein CsuB compare
PP_0087 -0.6 -2.0 conserved exported protein of unknown function compare
PP_1503 -0.6 -1.5 conserved protein of unknown function compare
PP_3073 -0.6 -2.3 3-hydroxybutyrate dehydrogenase compare
PP_2750 -0.6 -1.9 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4944 -0.6 -1.3 Carbamoyltransferase compare
PP_0725 -0.6 -2.8 conserved hypothetical TPR repeat protein compare
PP_5230 -0.6 -2.2 Tyrosine recombinase XerC compare
PP_1909 -0.6 -2.7 putative septum formation protein compare
PP_1381 -0.5 -0.8 4-carboxymuconolactone decarboxylase compare
PP_4803 -0.5 -3.1 D-alanyl-D-alanine carboxypeptidase compare
PP_4575 -0.5 -2.1 Urea amidolyase-related protein compare
PP_2525 -0.5 -1.7 conserved protein of unknown function compare
PP_0189 -0.5 -3.2 putative heme biosynthesis protein compare
PP_0825 -0.5 -2.1 phosphonates import ATP-binding protein compare
PP_3730 -0.5 -1.5 Transcriptional regulatory protein AruR compare
PP_0945 -0.5 -2.2 conserved protein of unknown function compare
PP_3898 -0.5 -2.7 conserved protein of unknown function compare
PP_3522 -0.5 -1.9 conserved protein of unknown function compare
PP_2903 -0.5 -1.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0022 -0.5 -0.7 hypothetical protein compare
PP_0872 -0.5 -2.5 Peptide chain release factor 3 compare
PP_5583 -0.5 -1.3 conserved protein of unknown function compare
PP_4066 -0.5 -1.4 methylglutaconyl-CoA hydratase compare
PP_2217 -0.5 -1.3 enoyl-CoA hydratase compare
PP_3782 -0.5 -2.7 conserved protein of unknown function compare
PP_4560 -0.5 -1.9 putative Ribonuclease BN compare
PP_3755 -0.5 -2.2 3-hydroxybutyryl-CoA dehydrogenase compare
PP_5303 -0.5 -2.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4204 -0.5 -1.9 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4696 -0.5 -2.5 Nitrogen regulation protein NR(I) compare
PP_2309 -0.5 -0.8 conserved protein of unknown function compare
PP_0152 -0.5 -1.0 conserved exported protein of unknown function compare
PP_1447 -0.5 -2.1 conserved protein of unknown function compare
PP_3027 -0.5 -2.1 conserved protein of unknown function compare
PP_4475 -0.5 -2.7 succinylglutamate desuccinylase compare
PP_4952 -0.5 -0.9 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0862 -0.5 -1.9 PKHD-type hydroxylase PP_0862 compare
PP_3398 -0.5 -1.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4045 -0.5 -1.6 conserved protein of unknown function compare
PP_0002 -0.5 -3.0 probable chromosome partition protein compare
PP_1575 -0.5 -1.0 conserved protein of unknown function compare
PP_2214 -0.5 -1.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0683 -0.5 -1.6 conserved protein of unknown function compare
PP_2433 -0.5 -1.4 conserved protein of unknown function compare
PP_2060 -0.5 -1.2 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4070 -0.5 -1.8 conserved protein of unknown function compare
PP_4251 -0.5 -1.9 cytochrome c oxidase subunit, cbb3-type compare
PP_4997 -0.5 -0.6 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1401 -0.5 -1.9 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_5101 -0.5 -2.8 coproporphyrinogen/heterocyclic compound oxidase (aerobic) compare
PP_5095 -0.5 -0.6 pyrroline-5-carboxylate reductase compare
PP_5347 -0.5 -3.3 pyruvate carboxylase subunit A compare
PP_0262 -0.5 -1.9 conserved protein of unknown function compare
PP_1374 -0.5 -2.3 conserved protein of unknown function compare
PP_3190 -0.5 -1.6 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_1456 -0.5 -2.0 conserved membrane protein of unknown function compare
PP_0978 -0.5 -1.6 conserved protein of unknown function compare
PP_0770 -0.5 -2.0 PemI-like protein compare
PP_3451 -0.5 -2.5 conserved exported protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment