Experiment set44S619 for Pseudomonas putida KT2440

Compare to:

Putida_ML5X with Paraburkholderia sabiae T6SS mutant

200 most important genes:

  gene name fitness t score description  
PP_1045 -4.0 -2.2 Type II secretion pathway protein XcpP compare
PP_0753 -4.0 -6.7 putative Lipoprotein compare
PP_0022 -3.7 -1.4 hypothetical protein compare
PP_5338 -3.5 -6.0 aspartate ammonia-lyase compare
PP_1783 -3.5 -3.3 dTDP-glucose pyrophosphorylase compare
PP_1224 -3.3 -7.7 periplasmic subunit of the TolQRA transport system compare
PP_0435 -2.9 -4.0 Peptidase, M23/M37 family compare
PP_2378 -2.9 -4.0 Fe/S biogenesis protein NfuA compare
PP_4941 -2.7 -5.4 conserved exported protein of unknown function compare
PP_5337 -2.6 -7.7 LysR family transcriptional regulator compare
PP_1872 -2.6 -9.4 glutamate-pyruvate aminotransferase compare
PP_0856 -2.4 -1.6 conserved lipoprotein of unknown function compare
PP_0035 -2.3 -3.2 putative bactoprenol-linked glycose transferase compare
PP_4942 -2.2 -2.5 conserved protein of unknown function compare
PP_2336 -2.2 -5.5 aconitate hydratase 1 compare
PP_1468 -2.1 -2.5 Tyrosine recombinase XerD compare
PP_3637 -2.0 -1.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4700 -2.0 -1.4 pantothenate synthetase compare
PP_2379 -1.9 -4.3 putative cytochrome oxidase biogenesis protein compare
PP_4620 -1.9 -7.1 Fumarylacetoacetase compare
PP_5328 -1.9 -1.8 putative phosphate transport system permease protein compare
PP_5621 -1.9 -2.6 protein of unknown function compare
PP_2402 -1.9 -3.1 putative Sensor histidine kinase compare
PP_0630 -1.9 -1.2 DNA gyrase inhibitor YacG compare
PP_4804 -1.8 -1.8 RlpA-like lipoprotein compare
PP_0719 -1.7 -1.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0393 -1.7 -2.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0001 -1.7 -1.7 probable chromosome-partitioning protein compare
PP_5008 -1.6 -1.2 Poly granule-associated protein compare
PP_4902 -1.6 -2.2 Oligoribonuclease compare
PP_3892 -1.6 -1.4 conserved protein of unknown function compare
PP_5216 -1.6 -2.0 exopolyphosphatase compare
PP_1099 -1.6 -1.6 Cold shock protein CapB compare
PP_5705 -1.5 -2.0 protein of unknown function compare
PP_4828 -1.5 -1.2 Precorrin-8X methylmutase compare
PP_2903 -1.5 -1.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4944 -1.5 -3.3 Carbamoyltransferase compare
PP_0339 -1.5 -3.2 Pyruvate dehydrogenase E1 component compare
PP_1237 -1.4 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4724 -1.4 -1.0 Carbamoyl-phosphate synthase small chain compare
PP_3105 -1.4 -1.2 conserved membrane protein of unknown function compare
PP_4723 -1.4 -1.6 Carbamoyl-phosphate synthase large chain compare
PP_2433 -1.4 -2.3 conserved protein of unknown function compare
PP_5445 -1.3 -2.3 conserved protein of unknown function compare
PP_1055 -1.3 -1.4 Type II secretion pathway protein GspN compare
PP_5SB -1.3 -2.0 5S ribosomal RNA compare
PP_4379 -1.3 -3.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2214 -1.3 -3.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1513 -1.3 -2.1 Ribosomal RNA small subunit methyltransferase J compare
PP_5109 -1.3 -4.3 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_4805 -1.3 -5.2 membrane-bound lytic murein transglycosylase B compare
PP_3898 -1.3 -2.6 conserved protein of unknown function compare
PP_1268 -1.3 -2.2 putative HtrA suppressor protein sohA compare
PP_1128 -1.3 -3.0 OmpA family protein compare
PP_5548 -1.3 -1.9 protein of unknown function compare
PP_4208 -1.2 -4.5 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1903 -1.2 -2.5 putative phosphotyrosine-protein phosphatase compare
PP_3840 -1.2 -1.2 conserved protein of unknown function compare
PP_4213 -1.2 -2.4 putative dipeptidase compare
PP_4808 -1.2 -2.1 23S rRNA m3psi1915 methyltransferase compare
PP_4575 -1.2 -2.9 Urea amidolyase-related protein compare
PP_5640 -1.2 -1.6 conserved protein of unknown function compare
PP_3098 -1.2 -0.9 conserved protein of unknown function compare
PP_1906 -1.2 -4.1 ribosomal large subunit pseudouridine synthase C compare
PP_5007 -1.2 -1.7 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2217 -1.1 -2.1 enoyl-CoA hydratase compare
PP_1041 -1.1 -1.1 twin arginine protein export complex subunit compare
PP_2088 -1.1 -2.8 RNA polymerase sigma factor SigX compare
PP_1575 -1.1 -1.4 conserved protein of unknown function compare
PP_5350 -1.1 -2.7 Transcriptional regulator, RpiR family compare
PP_4271 -1.1 -0.9 conserved protein of unknown function compare
PP_0855 -1.1 -2.1 conserved protein of unknown function compare
PP_2142 -1.1 -1.7 Cell division inhibitor SulA compare
PP_0214 -1.1 -4.5 4-aminobutyrate aminotransferase compare
PP_4699 -1.1 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4917 -1.1 -2.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2681 -1.1 -1.4 coenzyme PQQ synthesis protein D compare
PP_5110 -1.1 -1.3 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3239 -1.1 -1.7 putative cointegrate resolution protein T Tn4652 compare
PP_4895 -1.1 -2.3 tRNA dimethylallyltransferase compare
PP_1898 -1.1 -1.1 MotA/TolQ/ExbB proton channel family protein compare
PP_0429 -1.1 -4.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4217 -1.1 -8.7 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4830 -1.1 -3.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_5456 -1.1 -1.2 conserved protein of unknown function compare
PP_3903 -1.1 -1.6 conserved protein of unknown function compare
PP_5028 -1.0 -2.4 proline iminopeptidase compare
PP_1232 -1.0 -2.8 conserved exported protein of unknown function compare
PP_3190 -1.0 -1.5 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_4138 -1.0 -3.0 Chromate reductase compare
PP_4223 -1.0 -1.3 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1930 -1.0 -2.5 arsenic resistance transcriptional regulator compare
PP_1390 -1.0 -3.0 conserved exported protein of unknown function compare
PP_2744 -1.0 -3.9 Ribose-phosphate pyrophosphokinase family protein compare
PP_5279 -1.0 -2.0 conserved protein of unknown function compare
PP_1362 -1.0 -3.5 pyruvate kinase II compare
PP_4943 -1.0 -1.5 putative Glycosyl transferase compare
PP_3332 -1.0 -1.7 putative cytochrome c-type protein compare
PP_1131 -1.0 -2.3 outer membrane lipoprotein compare
PP_4008 -1.0 -3.1 ATP-dependent serine protease compare
PP_2302 -1.0 -3.7 DNA-binding, ATP-dependent protease compare
PP_5423 -1.0 -1.5 conserved membrane protein of unknown function compare
PP_0184 -0.9 -3.3 Argininosuccinate lyase compare
PP_1489 -0.9 -2.0 CheW domain protein compare
PP_5652 -0.9 -1.4 conserved protein of unknown function, phage origin compare
PP_4836 -0.9 -2.2 conserved exported protein of unknown function compare
PP_0832 -0.9 -2.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1207 -0.9 -2.6 conserved protein of unknown function compare
PP_0880 -0.9 -2.3 dipeptide ABC transporter - putative membrane subunit compare
PP_4936 -0.9 -2.5 O-antigen polymerase compare
PP_1935 -0.9 -1.0 Transcriptional regulator, Cro/CI family compare
PP_4803 -0.9 -3.1 D-alanyl-D-alanine carboxypeptidase compare
PP_0063 -0.9 -2.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4824 -0.9 -3.1 Sensor histidine kinase/response regulator compare
PP_1994 -0.9 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_0789 -0.9 -2.1 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_3055 -0.9 -2.3 Pyocin R2_PP, tail formation protein compare
PP_4988 -0.9 -3.2 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0319 -0.9 -1.2 conserved protein of unknown function compare
PP_1512 -0.9 -1.8 conserved protein of unknown function compare
PP_4227 -0.9 -1.4 conserved protein of unknown function compare
PP_0138 -0.9 -4.2 conserved membrane protein of unknown function compare
PP_2107 -0.9 -1.0 conserved protein of unknown function compare
PP_4204 -0.9 -2.7 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2319 -0.9 -2.2 conserved protein of unknown function compare
PP_3473 -0.9 -2.2 curli secretion and assembly outer membrane associated component compare
PP_4069 -0.8 -1.7 conserved protein of unknown function compare
PP_5229 -0.8 -1.5 conserved protein of unknown function compare
PP_0293 -0.8 -1.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4317 -0.8 -1.3 conserved protein of unknown function compare
PP_t13 -0.8 -1.9 tRNA-Lys compare
PP_4288 -0.8 -2.5 ureidoglycolate lyase compare
PP_4690 -0.8 -2.0 Rieske 2Fe-2S family protein compare
PP_1389 -0.8 -3.3 Oxaloacetate decarboxylase compare
PP_2307 -0.8 -2.0 conserved protein of unknown function compare
PP_4964 -0.8 -1.6 D-erythrose 4-phosphate dehydrogenase compare
PP_0290 -0.8 -3.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2592 -0.8 -2.1 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_2793 -0.8 -1.2 Acyl-CoA dehydrogenase family protein compare
PP_0809 -0.8 -2.7 disulfide bond formation protein B compare
PP_1584 -0.8 -2.6 conserved protein of unknown function compare
PP_5310 -0.8 -2.8 junction-specific ATP-dependent DNA helicase compare
PP_2313 -0.8 -1.1 conserved membrane protein of unknown function compare
PP_2145 -0.8 -1.5 beta-N-acetylglucosaminidase compare
PP_5610 -0.8 -1.3 protein of unknown function compare
PP_5053 -0.8 -3.0 Protein-export protein SecB compare
PP_3002 -0.8 -1.5 shikimate dehydrogenase-related enzyme compare
PP_4057 -0.8 -2.6 conserved membrane protein of unknown function with autotransporter beta-domain compare
PP_0345 -0.8 -2.4 putative Heptose kinase WapP compare
PP_4848 -0.8 -1.2 Curved DNA-binding protein compare
PP_1217 -0.8 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2773 -0.8 -1.1 conserved protein of unknown function compare
PP_5248 -0.8 -0.9 putative hydrolase compare
PP_0640 -0.8 -1.8 conserved protein of unknown function compare
PP_2254 -0.8 -2.5 Transcriptional regulator, GntR family compare
PP_4860 -0.8 -3.8 putative Mannose-6-phosphate isomerase compare
PP_5636 -0.8 -2.3 protein of unknown function compare
PP_1138 -0.8 -1.7 branched chain amino acid transporter - ATP binding subunit compare
PP_5367 -0.7 -2.0 Transketolase domain protein compare
PP_2000 -0.7 -0.7 amidophosphoribosyl transferase compare
PP_4475 -0.7 -3.1 succinylglutamate desuccinylase compare
PP_3916 -0.7 -1.4 conserved protein of unknown function compare
PP_4722 -0.7 -2.4 Transcription elongation factor GreA compare
PP_4994 -0.7 -1.2 conserved protein of unknown function compare
PP_1764 -0.7 -1.5 Phosphoglycolate phosphatase 2 compare
PP_0292 -0.7 -1.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0738 -0.7 -1.4 conserved protein of unknown function compare
PP_2499 -0.7 -0.8 conserved protein of unknown function compare
PP_4693 -0.7 -2.2 RNA polymerase-binding transcription factor DksA compare
PP_1020 -0.7 -1.4 putative glucose-6-phosphate 1-epimerase compare
PP_1895 -0.7 -2.4 putative ABC transporter - ATP binding subunit compare
PP_0547 -0.7 -2.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4247 -0.7 -0.8 Exonuclease compare
PP_4546 -0.7 -1.8 ATP-dependent helicase HrpA compare
PP_1770 -0.7 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0291 -0.7 -1.9 conserved protein of unknown function compare
PP_3073 -0.7 -1.7 3-hydroxybutyrate dehydrogenase compare
PP_0125 -0.7 -2.3 putative cytochrome c-type protein compare
PP_4471 -0.7 -1.9 Magnesium transporter compare
PP_0684 -0.7 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_1985 -0.7 -1.8 3-isopropylmalate dehydratase large subunit compare
PP_5241 -0.7 -0.9 DNA-binding response regulator, LuxR family compare
PP_5202 -0.7 -0.7 putative cell division protein compare
PP_t57 -0.7 -1.6 tRNA-Arg compare
PP_0921 -0.7 -1.9 Transcriptional regulator, ArsR family compare
PP_0276 -0.7 -0.7 Transcriptional regulator, Cro/CI family compare
PP_0400 -0.7 -2.5 CO2+/MG2+ efflux protein compare
PP_0770 -0.7 -2.3 PemI-like protein compare
PP_4576 -0.7 -2.6 allophanate hydrolase subunit compare
PP_5491 -0.7 -1.4 conserved protein of unknown function with SEC-C motif domain compare
PP_2087 -0.7 -1.1 CmpX protein compare
PP_4004 -0.7 -1.6 DNA translocase FtsK compare
PP_4419 -0.7 -1.1 transposase compare
PP_t12 -0.7 -0.6 tRNA-Thr compare
PP_3128 -0.7 -2.8 putative Exopolysaccharide biosynthesis/transport protein compare
PP_5508 -0.7 -0.7 conserved protein of unknown function compare
PP_0250 -0.7 -1.2 heat shock protein Hsp15 involved in ribosome recycling compare
PP_0261 -0.7 -3.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5617 -0.7 -1.7 conserved protein of unknown function compare
PP_3813 -0.7 -2.3 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare


Specific Phenotypes

For 3 genes in this experiment

For mixed community Paraburkholderia sabiae T6SS mutant in Pseudomonas putida KT2440

For mixed community Paraburkholderia sabiae T6SS mutant across organisms