Experiment set43S569 for Pseudomonas putida KT2440

Compare to:

NaCl stress 85 mM

200 most important genes:

  gene name fitness t score description  
PP_4994 -3.1 -2.1 conserved protein of unknown function compare
PP_0164 -2.8 -6.1 conserved protein of unknown function compare
PP_1232 -2.8 -3.8 conserved exported protein of unknown function compare
PP_4262 -1.9 -2.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0719 -1.9 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4902 -1.8 -1.7 Oligoribonuclease compare
PP_0833 -1.7 -1.1 queuine tRNA-ribosyltransferase compare
PP_4993 -1.7 -3.7 Glutathione synthetase compare
PP_4265 -1.6 -1.8 DNA-binding transcriptional dual regulator compare
PP_4129 -1.6 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2414 -1.5 -2.3 conserved exported protein of unknown function compare
PP_0856 -1.5 -1.0 conserved lipoprotein of unknown function compare
PP_4121 -1.5 -4.7 NADH-quinone oxidoreductase subunit C/D compare
PP_1783 -1.5 -2.5 dTDP-glucose pyrophosphorylase compare
PP_4131 -1.5 -5.1 NADH-quinone oxidoreductase subunit N compare
PP_1898 -1.4 -1.6 MotA/TolQ/ExbB proton channel family protein compare
PP_4008 -1.4 -3.8 ATP-dependent serine protease compare
PP_4263 -1.4 -3.0 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0339 -1.3 -2.6 Pyruvate dehydrogenase E1 component compare
PP_0593 -1.3 -1.8 putative ribosome-binding factor compare
PP_1318 -1.3 -5.0 Cytochrome b compare
PP_4120 -1.3 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_1764 -1.3 -2.6 Phosphoglycolate phosphatase 2 compare
PP_4098 -1.2 -2.3 UvrABC system protein C compare
PP_4342 -1.2 -2.2 flagellar synthesis regulator, putative ATPase compare
PP_1319 -1.2 -4.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_5327 -1.2 -2.7 putative phosphate ABC transporter, permease subunit compare
PP_3105 -1.2 -3.2 conserved membrane protein of unknown function compare
PP_1317 -1.2 -3.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1215 -1.2 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_0630 -1.2 -2.0 DNA gyrase inhibitor YacG compare
PP_4261 -1.2 -3.8 cation-transporting P-type ATPase compare
PP_1237 -1.1 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0127 -1.1 -2.0 Thiol:disulfide interchange protein compare
PP_2322 -1.1 -3.3 Major outer membrane lipoprotein compare
PP_0504 -1.1 -4.0 Outer membrane protein OprG compare
PP_4124 -1.0 -3.5 NADH-quinone oxidoreductase subunit G compare
PP_4837 -1.0 -2.8 conserved protein of unknown function compare
PP_4943 -1.0 -1.8 putative Glycosyl transferase compare
PP_4364 -1.0 -4.4 putative Anti-sigma F factor antagonist compare
PP_4895 -1.0 -2.0 tRNA dimethylallyltransferase compare
PP_4379 -1.0 -3.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4058 -1.0 -6.0 1,4-alpha-glucan branching enzyme compare
PP_1493 -1.0 -3.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5329 -1.0 -1.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1268 -1.0 -2.3 putative HtrA suppressor protein sohA compare
PP_5717 -0.9 -2.3 conserved protein of unknown function compare
PP_0888 -0.9 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_4700 -0.9 -1.2 pantothenate synthetase compare
PP_2378 -0.9 -2.1 Fe/S biogenesis protein NfuA compare
PP_1598 -0.9 -3.7 regulatory intramembrane protein RIP zinc protease compare
PP_4785 -0.9 -3.2 conserved exported protein of unknown function compare
PP_2031 -0.9 -3.0 conserved protein of unknown function compare
PP_1994 -0.9 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_2336 -0.9 -2.9 aconitate hydratase 1 compare
PP_1041 -0.9 -2.1 twin arginine protein export complex subunit compare
PP_0691 -0.9 -1.3 Glutamate 5-kinase compare
PP_4122 -0.9 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1999 -0.9 -2.1 membrane protein required for colicin V production compare
PP_4004 -0.9 -2.9 DNA translocase FtsK compare
PP_2302 -0.8 -4.0 DNA-binding, ATP-dependent protease compare
PP_3649 -0.8 -2.6 Transcriptional regulator, GntR family compare
PP_3726 -0.8 -2.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_4532 -0.8 -2.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0789 -0.8 -2.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_3110 -0.8 -2.1 protein of unknown function compare
PP_5706 -0.8 -1.5 Sec translocation complex - SecG subunit compare
PP_1733 -0.8 -1.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_4204 -0.8 -2.4 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4227 -0.8 -1.8 conserved protein of unknown function compare
PP_4696 -0.8 -3.4 Nitrogen regulation protein NR(I) compare
PP_2475 -0.8 -3.0 Transcriptional regulator, TetR family compare
PP_4482 -0.8 -2.1 Transcriptional regulator, AraC family compare
PP_4828 -0.8 -1.3 Precorrin-8X methylmutase compare
PP_5162 -0.8 -2.5 conserved exported protein of unknown function compare
PP_4880 -0.8 -4.6 exoribonuclease R compare
PP_4253 -0.8 -1.9 cytochrome c oxidase subunit, cbb3-type compare
PP_0846 -0.8 -0.7 DnaK-like molecular chaperone specific for IscU compare
PP_0401 -0.8 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PP_4726 -0.8 -1.8 Chaperone protein DnaJ compare
PP_4286 -0.8 -3.9 allantoinase compare
PP_4941 -0.8 -2.7 conserved exported protein of unknown function compare
PP_4787 -0.8 -2.2 putative protein with nucleoside triphosphate hydrolase domain compare
PP_3821 -0.7 -5.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5008 -0.7 -1.2 Poly granule-associated protein compare
PP_0292 -0.7 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3541 -0.7 -1.4 Transporter, MgtC family compare
PP_0082 -0.7 -3.2 tryptophan synthase alpha chain compare
PP_2330 -0.7 -2.2 conserved protein of unknown function compare
PP_4285 -0.7 -2.9 5-hydroxyisourate hydrolase compare
PP_0809 -0.7 -2.9 disulfide bond formation protein B compare
PP_1026 -0.7 -2.3 Peptidase, M23/M37 family compare
PP_4693 -0.7 -2.0 RNA polymerase-binding transcription factor DksA compare
PP_1812 -0.7 -1.7 conserved protein of unknown function compare
PP_4130 -0.7 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1734 -0.7 -1.7 Probable septum site-determining protein MinC compare
PP_4320 -0.7 -2.7 cytochrome c-type biogenesis protein compare
PP_4546 -0.7 -2.3 ATP-dependent helicase HrpA compare
PP_5028 -0.7 -2.4 proline iminopeptidase compare
PP_3892 -0.7 -1.5 conserved protein of unknown function compare
PP_3819 -0.7 -3.7 glutathione reductase (NADPH) compare
PP_4937 -0.7 -3.7 toluene tolerance protein compare
PP_5221 -0.7 -1.9 conserved protein of unknown function, UPF0178 family compare
PP_0063 -0.7 -2.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4642 -0.7 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_0111 -0.7 -3.4 Electron transport protein SCO1/SenC compare
PP_1322 -0.6 -1.3 putative Lipoprotein compare
PP_4009 -0.6 -2.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_4989 -0.6 -2.0 Protein PilJ compare
PP_2474 -0.6 -2.4 Glutathione S-transferase family protein compare
PP_5230 -0.6 -2.1 Tyrosine recombinase XerC compare
PP_0435 -0.6 -2.2 Peptidase, M23/M37 family compare
PP_1390 -0.6 -2.6 conserved exported protein of unknown function compare
PP_0126 -0.6 -1.7 Cytochrome c4 compare
PP_3102 -0.6 -2.5 conserved protein of unknown function compare
PP_2668 -0.6 -2.0 ABC efflux transporter, ATP-binding protein compare
PP_2153 -0.6 -2.5 conserved protein of unknown function compare
PP_0218 -0.6 -3.8 Sensory box protein compare
PP_1752 -0.6 -3.3 conserved protein of unknown function compare
PP_4250 -0.6 -3.9 cytochrome c oxidase subunit I, cbb3-type compare
PP_0967 -0.6 -4.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5328 -0.6 -0.8 putative phosphate transport system permease protein compare
PP_5295 -0.6 -1.7 conserved protein of unknown function compare
PP_3999 -0.6 -2.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4251 -0.6 -1.7 cytochrome c oxidase subunit, cbb3-type compare
PP_1271 -0.6 -2.5 putative Multidrug efflux MFS transporter compare
PP_5557 -0.6 -1.5 protein of unknown function compare
PP_4838 -0.6 -4.2 Outer membrane copper receptor OprC compare
PP_2765 -0.6 -1.6 putative Sulfonate monooxygenase MsuD compare
PP_4555 -0.6 -1.6 conserved protein of unknown function compare
PP_1381 -0.6 -1.1 4-carboxymuconolactone decarboxylase compare
PP_1716 -0.6 -1.2 Transcriptional regulator, Cro/CI family compare
PP_5580 -0.6 -1.7 protein of unknown function compare
PP_2337 -0.6 -1.5 aconitate isomerase compare
PP_2903 -0.6 -1.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2442 -0.6 -1.2 conserved protein of unknown function, DUF480 family compare
PP_1739 -0.6 -2.2 conserved membrane protein of unknown function compare
PP_5491 -0.6 -1.8 conserved protein of unknown function with SEC-C motif domain compare
PP_5279 -0.5 -1.9 conserved protein of unknown function compare
PP_0065 -0.5 -1.8 NAD-binding component of TrK potassium transporter compare
PP_3411 -0.5 -1.1 conserved protein of unknown function compare
PP_3380 -0.5 -2.2 2-ketogluconate utilization repressor compare
PP_4560 -0.5 -1.9 putative Ribonuclease BN compare
PP_5313 -0.5 -1.3 DNA-binding protein HU-alpha compare
PP_2370 -0.5 -1.4 conserved protein of unknown function compare
PP_4355 -0.5 -1.4 flagellar export apparatus subunit compare
PP_4684 -0.5 -2.7 conserved protein of unknown function with kinase-like domain compare
PP_2299 -0.5 -1.7 Trigger factor compare
PP_2144 -0.5 -2.0 Transcriptional regulator, TetR family compare
PP_4722 -0.5 -1.8 Transcription elongation factor GreA compare
PP_5346 -0.5 -2.7 pyruvate carboxylase subunit B compare
PP_5039 -0.5 -1.6 conserved protein of unknown function compare
PP_2215 -0.5 -2.2 acetyl-CoA acetyltransferase compare
PP_2355 -0.5 -2.4 Response regulator receiver protein compare
PP_0735 -0.5 -1.0 molybdopterin-synthase adenylyltransferase compare
PP_0887 -0.5 -2.8 Sensor histidine kinase compare
PP_5051 -0.5 -1.2 conserved protein of unknown function compare
PP_1876 -0.5 -2.0 putative ATP/GTP-binding protein of the AAA+ family compare
PP_0781 -0.5 -1.0 conserved protein of unknown function compare
PP_1352 -0.5 -1.6 UPF0234 protein PP_1352 compare
PP_4824 -0.5 -2.5 Sensor histidine kinase/response regulator compare
PP_4233 -0.5 -2.1 putative Oxidoreductase, small subunit compare
PP_5139 -0.5 -2.1 cadmium translocating P-type ATPase compare
PP_0627 -0.5 -1.4 conserved protein of unknown function compare
PP_0949 -0.5 -2.4 putative ATP-binding protein UPF0042 compare
PP_1513 -0.5 -1.3 Ribosomal RNA small subunit methyltransferase J compare
PP_4260 -0.5 -1.9 conserved protein of unknown function compare
PP_1629 -0.5 -2.6 Protein RecA compare
PP_1233 -0.5 -1.4 sulfurtransferase compare
PP_4475 -0.5 -2.4 succinylglutamate desuccinylase compare
PP_1692 -0.5 -1.4 conserved protein of unknown function compare
PP_2721 -0.5 -2.4 conserved membrane protein of unknown function compare
PP_3473 -0.5 -2.2 curli secretion and assembly outer membrane associated component compare
PP_t29 -0.5 -0.9 tRNA-Ala compare
PP_0872 -0.5 -2.7 Peptide chain release factor 3 compare
PP_2857 -0.5 -1.4 conserved exported protein of unknown function compare
PP_2800 -0.5 -2.0 putative Diaminobutyrate-2-oxoglutarate transaminase compare
PP_3946 -0.5 -0.9 HTH-type transcriptional repressor NicR compare
PP_2864 -0.5 -1.5 conserved protein of unknown function compare
PP_5621 -0.5 -1.4 protein of unknown function compare
PP_4156 -0.5 -1.3 Transcriptional regulator, LysR family compare
PP_5338 -0.5 -1.6 aspartate ammonia-lyase compare
PP_5610 -0.4 -1.2 protein of unknown function compare
PP_0758 -0.4 -2.2 conserved protein of unknown function compare
PP_5558 -0.4 -1.7 putative transcriptional xre family of phage origin compare
PP_1553 -0.4 -1.1 conserved protein of unknown function compare
PP_2820 -0.4 -1.6 HTH-type transcriptional regulator nfxB compare
PP_3384 -0.4 -1.2 gluconate 2-dehydrogenase gamma subunit compare
PP_3903 -0.4 -1.0 conserved protein of unknown function compare
PP_3258 -0.4 -1.3 conserved protein of unknown function compare
PP_3770 -0.4 -1.7 conserved protein of unknown function compare
PP_1679 -0.4 -1.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0914 -0.4 -3.0 GGDEF domain protein compare
PP_3505 -0.4 -0.9 conserved protein of unknown function compare
PP_2256 -0.4 -1.7 Transcriptional regulator, Cro/CI family compare
PP_1562 -0.4 -0.9 putative Phage terminase, small subunit compare
PP_4836 -0.4 -1.3 conserved exported protein of unknown function compare
PP_4513 -0.4 -2.3 conserved protein of unknown function compare
PP_2274 -0.4 -1.8 conserved protein of unknown function compare
PP_1635 -0.4 -1.6 DNA-binding response regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Sodium Chloride across organisms